Guide to the Human Genome
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Name: LOC100130208 Sequence: fasta or formatted (217aa) NCBI GI: 169217327
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {217aa} PREDICTED: similar to CYorf16 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         16           1
 C cysteine            3.2          7           1
 D aspartate           3.2          7           1
 E glutamate           6.9         15           2
 F phenylalanine       3.2          7           2
 G glycine            11.5         25           2
 H histidine           3.7          8           2
 I isoleucine          3.2          7           1
 K lysine              3.2          7           1
 L leucine             4.6         10           1
 M methionine          1.8          4           1
 N asparagine          2.3          5           1
 P proline             8.8         19           3
 Q glutamine           6.9         15           2
 R arginine            5.5         12           1
 S serine             11.5         25           2
 T threonine           3.7          8           1
 V valine              4.6         10           2
 W tryptophan          1.8          4           1
 Y tyrosine            2.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130208          1.000   PREDICTED: similar to CYorf16 protein 
LOC100288465          0.486   PREDICTED: hypothetical protein XP_002343910 
LOC100289265          0.459   PREDICTED: hypothetical protein 
LOC100289265          0.459   PREDICTED: hypothetical protein XP_002344242 
LOC100292670          0.303   PREDICTED: similar to CYorf16 protein 
LOC100289188          0.303   PREDICTED: hypothetical protein XP_002344241 
LOC100289150          0.303   PREDICTED: hypothetical protein XP_002344240 
LOC100287859          0.303   PREDICTED: hypothetical protein XP_002344483 
LOC100287826          0.303   PREDICTED: hypothetical protein XP_002344482 
LOC100287798          0.303   PREDICTED: hypothetical protein XP_002344481 
LOC100132506          0.300   PREDICTED: similar to CYorf16 protein 
LOC100132932          0.300   PREDICTED: similar to CYorf16 protein 
LOC100292671          0.291   PREDICTED: similar to CYorf16 protein 
LOC100290384          0.291   PREDICTED: hypothetical protein XP_002348288 
LOC100291283          0.211   PREDICTED: hypothetical protein XP_002348282 
TSPY3                 0.133   testis specific protein, Y-linked 3 
LOC728132             0.131   PREDICTED: similar to testis specific protein, Y-li...
TSPY2                 0.126   testis specific protein, Y-linked 2 
LOC728403             0.110   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPY1                 0.108   testis specific protein, Y-linked 1 
LOC100289087          0.108   PREDICTED: hypothetical protein XP_002344239 
LOC728395             0.103   PREDICTED: similar to testis specific protein, Y-li...
TSPYL1                0.057   TSPY-like 1 
LOC727969             0.055   PREDICTED: similar to hCG1807781 
LOC727969             0.055   PREDICTED: similar to TSPY-like 2 
LOC727969             0.055   PREDICTED: similar to hCG1807781 
TSPYL5                0.053   TSPY-like 5 
TSPYL6                0.050   TSPY-like 6 
TSPYL2                0.037   TSPY-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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