Guide to the Human Genome
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Name: LOC100291283 Sequence: fasta or formatted (344aa) NCBI GI: 239752459
Description:

PREDICTED: hypothetical protein XP_002348282

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         28           2
 C cysteine            3.2         11           1
 D aspartate           3.8         13           2
 E glutamate           7.3         25           2
 F phenylalanine       2.0          7           2
 G glycine             7.8         27           2
 H histidine           3.2         11           1
 I isoleucine          1.5          5           2
 K lysine              2.3          8           1
 L leucine             9.3         32           2
 M methionine          2.3          8           1
 N asparagine          2.3          8           2
 P proline             8.7         30           2
 Q glutamine           8.4         29           2
 R arginine            4.7         16           1
 S serine              7.0         24           2
 T threonine           6.1         21           3
 V valine              8.4         29           2
 W tryptophan          1.2          4           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348282 
LOC100288465          0.140   PREDICTED: hypothetical protein XP_002343910 
LOC100130208          0.134   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.134   PREDICTED: hypothetical protein 
LOC100289265          0.127   PREDICTED: hypothetical protein 
LOC100289265          0.127   PREDICTED: hypothetical protein XP_002344242 
TSPY1                 0.085   testis specific protein, Y-linked 1 
LOC100289087          0.085   PREDICTED: hypothetical protein XP_002344239 
LOC728403             0.085   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPY3                 0.085   testis specific protein, Y-linked 3 
TSPY2                 0.085   testis specific protein, Y-linked 2 
LOC728132             0.074   PREDICTED: similar to testis specific protein, Y-li...
LOC728395             0.074   PREDICTED: similar to testis specific protein, Y-li...
LOC727969             0.045   PREDICTED: similar to hCG1807781 
LOC727969             0.045   PREDICTED: similar to TSPY-like 2 
LOC727969             0.045   PREDICTED: similar to hCG1807781 
LOC100132506          0.029   PREDICTED: similar to CYorf16 protein 
LOC100289188          0.029   PREDICTED: hypothetical protein XP_002344241 
LOC100289150          0.029   PREDICTED: hypothetical protein XP_002344240 
LOC100287859          0.029   PREDICTED: hypothetical protein XP_002344483 
LOC100287826          0.029   PREDICTED: hypothetical protein XP_002344482 
LOC100287798          0.029   PREDICTED: hypothetical protein XP_002344481 
LOC100132932          0.029   PREDICTED: similar to CYorf16 protein 
LOC100292670          0.025   PREDICTED: similar to CYorf16 protein 
LOC100292671          0.019   PREDICTED: similar to CYorf16 protein 
LOC100290384          0.019   PREDICTED: hypothetical protein XP_002348288 
KIAA1598              0.016   shootin1 isoform a 
LOC100288881          0.013   PREDICTED: hypothetical protein XP_002343185 
LOC100134209          0.013   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC731035             0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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