Guide to the Human Genome
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Name: LOC100288465 Sequence: fasta or formatted (228aa) NCBI GI: 239747029
Description:

PREDICTED: hypothetical protein XP_002343910

Referenced in:

Y-linked Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         16           1
 C cysteine            2.2          5           1
 D aspartate           3.5          8           1
 E glutamate           8.3         19           3
 F phenylalanine       3.9          9           1
 G glycine             7.9         18           2
 H histidine           4.4         10           2
 I isoleucine          3.1          7           2
 K lysine              3.5          8           2
 L leucine             7.5         17           2
 M methionine          3.1          7           1
 N asparagine          2.6          6           1
 P proline             5.7         13           2
 Q glutamine           5.3         12           1
 R arginine            5.7         13           2
 S serine              8.8         20           2
 T threonine           4.4         10           1
 V valine              7.9         18           3
 W tryptophan          2.2          5           1
 Y tyrosine            3.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343910 
LOC100289265          0.567   PREDICTED: hypothetical protein 
LOC100289265          0.567   PREDICTED: hypothetical protein XP_002344242 
LOC100292671          0.540   PREDICTED: similar to CYorf16 protein 
LOC100290384          0.540   PREDICTED: hypothetical protein XP_002348288 
LOC100130208          0.471   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.471   PREDICTED: hypothetical protein 
LOC100292670          0.340   PREDICTED: similar to CYorf16 protein 
LOC100289188          0.324   PREDICTED: hypothetical protein XP_002344241 
LOC100289150          0.324   PREDICTED: hypothetical protein XP_002344240 
LOC100287859          0.324   PREDICTED: hypothetical protein XP_002344483 
LOC100287826          0.324   PREDICTED: hypothetical protein XP_002344482 
LOC100287798          0.324   PREDICTED: hypothetical protein XP_002344481 
LOC100132932          0.316   PREDICTED: similar to CYorf16 protein 
LOC100132506          0.313   PREDICTED: similar to CYorf16 protein 
LOC100291283          0.213   PREDICTED: hypothetical protein XP_002348282 
TSPY2                 0.193   testis specific protein, Y-linked 2 
LOC728403             0.191   PREDICTED: similar to Testis-specific Y-encoded pro...
LOC100289087          0.189   PREDICTED: hypothetical protein XP_002344239 
TSPY3                 0.189   testis specific protein, Y-linked 3 
TSPY1                 0.184   testis specific protein, Y-linked 1 
LOC728132             0.176   PREDICTED: similar to testis specific protein, Y-li...
LOC728395             0.176   PREDICTED: similar to testis specific protein, Y-li...
LOC727969             0.100   PREDICTED: similar to hCG1807781 
LOC727969             0.100   PREDICTED: similar to TSPY-like 2 
LOC727969             0.100   PREDICTED: similar to hCG1807781 
RUNDC2B               0.049   RUN domain containing 2B 
TSPYL2                0.047   TSPY-like 2 
PPIL3                 0.042   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
TSPYL4                0.042   TSPY-like 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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