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Search of human proteins with 239752315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752315 PREDICTED: hypothetical protein XP_002348197 [Homo
sapiens]
(367 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757803 PREDICTED: hypothetical protein [Homo sapiens] 751 0.0
gi|239752315 PREDICTED: hypothetical protein XP_002348197 [Homo ... 751 0.0
gi|239746822 PREDICTED: hypothetical protein XP_002343851 [Homo ... 664 0.0
gi|116268103 zinc finger, FYVE domain containing 19 [Homo sapiens] 37 0.021
gi|65288071 tensin 3 [Homo sapiens] 33 0.31
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 33 0.53
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 33 0.53
gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens] 33 0.53
gi|8923040 CDKN2A interacting protein [Homo sapiens] 32 0.69
gi|134031945 SCO-spondin [Homo sapiens] 32 0.69
gi|38569471 MUF1 protein [Homo sapiens] 32 1.2
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 30 2.6
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 2.6
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 30 3.4
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi... 30 3.4
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi... 30 3.4
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 30 4.5
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 30 4.5
gi|57546899 myeloid/lymphoid or mixed-lineage leukemia transloca... 30 4.5
gi|4557853 transcription factor SOX9 [Homo sapiens] 29 5.8
gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo sap... 29 5.8
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 29 5.8
gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo sap... 29 5.8
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 29 5.8
gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo sap... 29 5.8
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 29 5.8
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 29 5.8
gi|116256471 SNF1-like kinase [Homo sapiens] 29 7.6
gi|40068065 hypothetical protein LOC54058 [Homo sapiens] 29 7.6
gi|150170732 hypothetical protein LOC374470 [Homo sapiens] 29 7.6
>gi|239757803 PREDICTED: hypothetical protein [Homo sapiens]
Length = 367
Score = 751 bits (1938), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS
Sbjct: 1 MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
Query: 61 TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH
Sbjct: 61 TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
Query: 121 DMHVVLGVPHLWGECTDHHPASSQALLESDHSGAAVDATGWSLLESIHNRAVAGWKVQQS 180
DMHVVLGVPHLWGECTDHHPASSQALLESDHSGAAVDATGWSLLESIHNRAVAGWKVQQS
Sbjct: 121 DMHVVLGVPHLWGECTDHHPASSQALLESDHSGAAVDATGWSLLESIHNRAVAGWKVQQS 180
Query: 181 SSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAG 240
SSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAG
Sbjct: 181 SSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAG 240
Query: 241 TSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQV 300
TSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQV
Sbjct: 241 TSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQV 300
Query: 301 LPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGINQLG 360
LPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGINQLG
Sbjct: 301 LPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGINQLG 360
Query: 361 GGGTAGE 367
GGGTAGE
Sbjct: 361 GGGTAGE 367
>gi|239752315 PREDICTED: hypothetical protein XP_002348197 [Homo
sapiens]
Length = 367
Score = 751 bits (1938), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS
Sbjct: 1 MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
Query: 61 TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH
Sbjct: 61 TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
Query: 121 DMHVVLGVPHLWGECTDHHPASSQALLESDHSGAAVDATGWSLLESIHNRAVAGWKVQQS 180
DMHVVLGVPHLWGECTDHHPASSQALLESDHSGAAVDATGWSLLESIHNRAVAGWKVQQS
Sbjct: 121 DMHVVLGVPHLWGECTDHHPASSQALLESDHSGAAVDATGWSLLESIHNRAVAGWKVQQS 180
Query: 181 SSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAG 240
SSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAG
Sbjct: 181 SSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAG 240
Query: 241 TSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQV 300
TSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQV
Sbjct: 241 TSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQV 300
Query: 301 LPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGINQLG 360
LPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGINQLG
Sbjct: 301 LPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGINQLG 360
Query: 361 GGGTAGE 367
GGGTAGE
Sbjct: 361 GGGTAGE 367
>gi|239746822 PREDICTED: hypothetical protein XP_002343851 [Homo
sapiens]
Length = 371
Score = 664 bits (1713), Expect = 0.0
Identities = 337/375 (89%), Positives = 341/375 (90%), Gaps = 12/375 (3%)
Query: 1 MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS
Sbjct: 1 MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
Query: 61 TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
TQMQACCLPTCGHIKEEREDTA VITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH
Sbjct: 61 TQMQACCLPTCGHIKEEREDTAMVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
Query: 121 DMHVVLGVPHLWGECTDHHPA--------SSQALLESDHSGAAVDATGWSLLESIHNRAV 172
DMHVVLGVPHL T H S Q+ LESD G D T SL+ + +
Sbjct: 121 DMHVVLGVPHLSPHYTPGHTRLSNVLPLLSDQSTLESDTVGPLTDQTRLSLIILL----L 176
Query: 173 AGWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST 232
GWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST
Sbjct: 177 RGWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST 236
Query: 233 RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ 292
RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ
Sbjct: 237 RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ 296
Query: 293 QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR 352
QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR
Sbjct: 297 QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR 356
Query: 353 TEGINQLGGGGTAGE 367
TEGINQLGGGGTAGE
Sbjct: 357 TEGINQLGGGGTAGE 371
>gi|116268103 zinc finger, FYVE domain containing 19 [Homo sapiens]
Length = 471
Score = 37.4 bits (85), Expect = 0.021
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 20/153 (13%)
Query: 153 GAAVDATGWSLLESIHNRAVAGWKVQQSSSALSGSGISRMQRPSSEAQMRM--------- 203
G++ +A+ WS ++ R VA + +Q S G++R + +E R+
Sbjct: 135 GSSANASKWSPPQNYKKR-VAALEAKQKPSTSQSQGLTRQDQMIAERLARLRQENKPKLV 193
Query: 204 VASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWHREMLPSR---PEDH-PQTH 259
+ +E++ R++ +D+ + P R + +LPS+ P H P T
Sbjct: 194 PSQAEIEARLAALKDERQGSIPSTQEMEARLA------ALQGRVLPSQTPQPAHHTPDTR 247
Query: 260 LHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ 292
A ++ A + +W G GP A Q
Sbjct: 248 TQAQQTQDLLTQLAAEVAIDESWKGGGPAASLQ 280
>gi|65288071 tensin 3 [Homo sapiens]
Length = 1445
Score = 33.5 bits (75), Expect = 0.31
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 180 SSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGA 239
SS +S +G + + SS A+ + V SS L + P + + +
Sbjct: 926 SSCTISSNGPGQRRESSSSAERQWVESSPKPMVSLLGSGR---------PTGSPLSAEFS 976
Query: 240 GTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPK 297
GT +L P Q H+ + S A D++A +S A+LG G + LPP+
Sbjct: 977 GTRKDSPVLSCFPPSELQAPFHSHELSLAEPPDSLAPPSSQAFLGFGTAPVGSGLPPE 1034
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 32.7 bits (73), Expect = 0.53
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 178 QQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKS--------ETPRVWP 229
+ SSS LS G + + +P++ + + D +R++ KS E +W
Sbjct: 1762 RHSSSPLSPGGPTHLTKPTTTSSSER--ERDRDRERDRDREREKSILTSTTTVEHAPIWR 1819
Query: 230 RSTRSTVGGAGTSWHREMLPSRPEDHPQTHLHA 262
T + G +G+S SRP H H H+
Sbjct: 1820 PGTEQSSGSSGSSGGGGGSSSRPASHSHAHQHS 1852
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.7 bits (73), Expect = 0.53
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 178 QQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKS--------ETPRVWP 229
+ SSS LS G + + +P++ + + D +R++ KS E +W
Sbjct: 1778 RHSSSPLSPGGPTHLTKPTTTSSSER--ERDRDRERDRDREREKSILTSTTTVEHAPIWR 1835
Query: 230 RSTRSTVGGAGTSWHREMLPSRPEDHPQTHLHA 262
T + G +G+S SRP H H H+
Sbjct: 1836 PGTEQSSGSSGSSGGGGGSSSRPASHSHAHQHS 1868
>gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens]
Length = 1494
Score = 32.7 bits (73), Expect = 0.53
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 184 LSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSW 243
+ G+GI R++ ++ +S + M QA S +V PRS RST+G
Sbjct: 445 MMGTGIGRIEASPQRSRSSSTSSDHGNFMMPPVGPQATSSGIKVPPRSPRSTIGSP---- 500
Query: 244 HREMLPSRPEDHPQTH 259
R +PS P H
Sbjct: 501 -RPSMPSSPSTKSDGH 515
>gi|8923040 CDKN2A interacting protein [Homo sapiens]
Length = 580
Score = 32.3 bits (72), Expect = 0.69
Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 138 HHPASSQALLESD---HSGAAVDATGWSLLESIHNRAVAGWKVQQSSSA-------LSGS 187
H AS +LL+S H + D+ S S A+ G S S+ L S
Sbjct: 239 HGSASFVSLLKSSVNSHMTQSTDSRQQS--GSPKKSALEGSSASASQSSSEIEVPLLGSS 296
Query: 188 GISRMQ------RPSSEAQ---MRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGG 238
G S ++ +PSSE + SSE S+ ++ + S T + P+S+ ST
Sbjct: 297 GSSEVELPLLSSKPSSETASSGLTSKTSSEASVSSSVAKNSSSSGTSLLTPKSSSST--- 353
Query: 239 AGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTA 281
+ +L S+ L A KSS+ T+ V+ TS A
Sbjct: 354 -----NTSLLTSKSTSQVAASLLASKSSSQTSGSLVSKSTSLA 391
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 32.3 bits (72), Expect = 0.69
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 53 PWEGWRASTQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLH 112
PW W C +CG + V+T P +G +G +D C P
Sbjct: 3816 PWSPWGP-------CSRSCGGLGTRTRSRQCVLTMPTLSGQGCRGPRQDLECPSPDCP-- 3866
Query: 113 FLACGDVHDMHVVLGVPHLWGECTDHHPAS 142
+ + V G+P WG + P S
Sbjct: 3867 ---GAEGSTVEPVTGLPGGWGPWSSWSPCS 3893
>gi|38569471 MUF1 protein [Homo sapiens]
Length = 812
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 186 GSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSE-TPRVWPRSTRSTVGGAGTSWH 244
GS + +RP +A R A+ R S + ++ RV RST+ ++ GT
Sbjct: 280 GSLLLGSRRPRRDAAERCAAALMASRRKSEAKQMPRAAPATRVTRRSTQESLTAGGTDLK 339
Query: 245 REMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKP 298
RE+ P + + AAT+ + +ST+ P + A Q PKP
Sbjct: 340 RELHPPATSHEAPGTKRSPSAPAATS----SASSSTSSYKRAPASSAPQ--PKP 387
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 66 CCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLH 112
CC P + + A R ++PA I GQ TA LA APLH
Sbjct: 496 CCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTASMLAAAPLH 542
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 30.4 bits (67), Expect = 2.6
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 239 AGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKP 298
A + H + P PE A+ + + A A G A EG A + PP
Sbjct: 35 ASAAHHHHLAPRTPEVRAAA-AGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAG 93
Query: 299 QVLP----TQRWGVPS--LGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAG 348
+ P QR G PS ++P A PA LRP + VPA + AG
Sbjct: 94 RARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG 149
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 30.0 bits (66), Expect = 3.4
Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 284 GEGPVALAQQLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWK----RWCAVRVV 339
G G VA A P LP RW + LP AAP W+ R
Sbjct: 146 GPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPTC 205
Query: 340 PAGSGCRAGSRHRTEGINQLGGGGTAG 366
P S CR S + GGG AG
Sbjct: 206 PCCSRCRELSPPMGPDLGGGGGGAGAG 232
>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
sapiens]
Length = 830
Score = 30.0 bits (66), Expect = 3.4
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 266 SAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQVLPTQRWG-------VPSLGILPQQL 318
S+ + D+ I T LG G L++Q+ KP+ + G PS GILP +
Sbjct: 230 SSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLET 289
Query: 319 AAPAD 323
+P D
Sbjct: 290 PSPGD 294
>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
sapiens]
Length = 824
Score = 30.0 bits (66), Expect = 3.4
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 266 SAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQVLPTQRWG-------VPSLGILPQQL 318
S+ + D+ I T LG G L++Q+ KP+ + G PS GILP +
Sbjct: 230 SSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLET 289
Query: 319 AAPAD 323
+P D
Sbjct: 290 PSPGD 294
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 29.6 bits (65), Expect = 4.5
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 178 QQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVG 237
+QS S R + PS E + R SS S ERD ++S +P +R
Sbjct: 558 RQSRSPSKERDRRRWRSPSKERERRQSRSS------SEERDHSRSRSPNKQSGYSRPRAS 611
Query: 238 GAGTSWHREMLPSRPEDHPQTHLHAVKS 265
+ R PS+ +H Q+ + +S
Sbjct: 612 SKEKAHSRSRTPSKEGNHSQSRTSSKES 639
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 29.6 bits (65), Expect = 4.5
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 208 EVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSA 267
++D ++ ++ S P+ P + + TV S HRE++ S PED Q +
Sbjct: 485 KIDRSRAIRGEKELSSEPQT-PPAQKGTVPLPTISGHRELVLSSPEDLTQDFEEMKREER 543
Query: 268 ATADDAVAIGTSTAWLGEGPVAL--AQQLPPKPQVLPTQRWGVPSLG 312
A + G LG+ P L A++ PP + T VP LG
Sbjct: 544 ALLAEQRDTG-----LGDKPFPLDTAEEGPPSTAIQGTPP-SVPGLG 584
>gi|57546899 myeloid/lymphoid or mixed-lineage leukemia translocated
to, 10 isoform b [Homo sapiens]
Length = 1011
Score = 29.6 bits (65), Expect = 4.5
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 140 PASSQALLESDHSGAAVDATGWSLLESIHNRAVAGWKVQQS-SSALSGSGISRMQRPSSE 198
P S+ ++ H GA T LL +IHN V S + +SGSG S P S
Sbjct: 537 PVGSEISMQYRHDGACPTTTFSELLNAIHNGIYNSNDVAVSFPNVVSGSGSS---TPVSS 593
Query: 199 AQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTS 242
+ + +S + +L S P V + +T+ G+ S
Sbjct: 594 SHLPQQSSGHLQQVGALSPSAVSSAAPAV-ATTQANTLSGSSLS 636
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 29.3 bits (64), Expect = 5.8
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 249 PSRPEDHPQ---THLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQVLPTQR 305
P P H Q T + + S+AAT A + S P Q PP PQ P Q
Sbjct: 304 PGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQA-PPQP 362
Query: 306 WGVPSLGILPQQLAAP 321
P PQQ AAP
Sbjct: 363 QAAP-----PQQPAAP 373
>gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 5.8
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 286 GPVALAQQLPPKPQVLPTQRWGVPSLGILPQQLAAPADI-LRPKLWKRWCAVRVVPAGSG 344
GP A +Q PQ W P+L P D LRP+ R A R V
Sbjct: 55 GPHARPRQAARPPQAFAPTAWA-PALASPAPDTPRPRDAQLRPEKAGRDLA-RDVENPPP 112
Query: 345 CRAGSRHRTEGINQLGGGGTAG 366
R G+R R Q GGG AG
Sbjct: 113 LRGGARSRCGESRQAGGGARAG 134
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 29.3 bits (64), Expect = 5.8
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 185 SGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWH 244
+G+ S +R S +++ + + DTR+ A+ PR P S+R G AG
Sbjct: 165 AGAASSLSERSSERVELQS-DTDDSDTRV------AEGARPRPGPTSSRRPWGRAGGLRP 217
Query: 245 REMLPSRPEDHPQTHLHAVKSSAATA 270
R P+R + P + SAA A
Sbjct: 218 RGKRPARGKKRPSSQRRCSSPSAARA 243
>gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 5.8
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 286 GPVALAQQLPPKPQVLPTQRWGVPSLGILPQQLAAPADI-LRPKLWKRWCAVRVVPAGSG 344
GP A +Q PQ W P+L P D LRP+ R A R V
Sbjct: 55 GPHARPRQAARPPQAFAPTAWA-PALASPAPDTPRPRDAQLRPEKAGRDLA-RDVENPPP 112
Query: 345 CRAGSRHRTEGINQLGGGGTAG 366
R G+R R Q GGG AG
Sbjct: 113 LRGGARSRCGESRQAGGGARAG 134
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 29.3 bits (64), Expect = 5.8
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 185 SGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWH 244
+G+ S +R S +++ + + DTR+ A+ PR P S+R G AG
Sbjct: 165 AGAASSLSERSSERVELQS-DTDDSDTRV------AEGARPRPGPTSSRRPWGRAGGLRP 217
Query: 245 REMLPSRPEDHPQTHLHAVKSSAATA 270
R P+R + P + SAA A
Sbjct: 218 RGKRPARGKKRPSSQRRCSSPSAARA 243
>gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 5.8
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 286 GPVALAQQLPPKPQVLPTQRWGVPSLGILPQQLAAPADI-LRPKLWKRWCAVRVVPAGSG 344
GP A +Q PQ W P+L P D LRP+ R A R V
Sbjct: 55 GPHARPRQAARPPQAFAPTAWA-PALASPAPDTPRPRDAQLRPEKAGRDLA-RDVENPPP 112
Query: 345 CRAGSRHRTEGINQLGGGGTAG 366
R G+R R Q GGG AG
Sbjct: 113 LRGGARSRCGESRQAGGGARAG 134
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 29.3 bits (64), Expect = 5.8
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 252 PEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQ-LPPKPQVLPTQRWGVPS 310
P D P + H V++ AT T L PV Q LPP+P VLP Q P
Sbjct: 921 PTDVPPSPHHTVQNMRATPPQPALPPQPT--LPPQPVLPPQPTLPPQP-VLPPQPTRPPQ 977
Query: 311 LGILPQQLAAPADILRPK 328
+ PQ + P +L P+
Sbjct: 978 PVLPPQPMLPPQPVLPPQ 995
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 29.3 bits (64), Expect = 5.8
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 180 SSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVW-PRSTRSTVGG 238
SS ++SGS ++P + S + ++ +AKS TP PR++ GG
Sbjct: 749 SSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGG 808
Query: 239 AGTSWHREMLPSRPEDHPQTHLH----AVKSSAATADDAVAIGTSTAWLG-EGPVA 289
++ + + H + H AV ++AA A AI +T L E PVA
Sbjct: 809 KKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAAAAAVTPAAIAAATTTLAQEEPVA 864
>gi|116256471 SNF1-like kinase [Homo sapiens]
Length = 783
Score = 28.9 bits (63), Expect = 7.6
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 138 HHPASSQALLESDHSGAAVDATGWSLLESI 167
H PA S L H GAA GWSLLE +
Sbjct: 629 HAPAQSPGL----HGGAAGSREGWSLLEEV 654
>gi|40068065 hypothetical protein LOC54058 [Homo sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 7.6
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 21/122 (17%)
Query: 194 RPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWHREMLPSRPE 253
RP Q + ++ R+ + + + W +R +G A P
Sbjct: 128 RPDDALQTALKRRRDLLQRLREQHLLDELSRAQAWSGPSRGALGSA-----------LPP 176
Query: 254 DHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLP--------PKPQVLPTQR 305
+ P T + S + A D I T + + P + QQLP P PQ PTQR
Sbjct: 177 ELPPTGILPTASPSPLAPDPPRIILPT--VPQPPATIIQQLPQQPLIAQIPPPQAFPTQR 234
Query: 306 WG 307
G
Sbjct: 235 SG 236
>gi|150170732 hypothetical protein LOC374470 [Homo sapiens]
Length = 360
Score = 28.9 bits (63), Expect = 7.6
Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 27/178 (15%)
Query: 136 TDHHPASSQALLESDHSGAAVDATGW--SLLESIHNRAVAGWKVQQSSSALSGSGISRMQ 193
TD P A E++ W S LE + + V G ISR
Sbjct: 137 TDEAPLIFTARGETEERARGAPKQAWNSSFLEQLVKKPNWAHSVNPVHLEAQGIHISRHT 196
Query: 194 RPS----SEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWHREMLP 249
RP S + +++ T + L R +S+TP + +ST P
Sbjct: 197 RPKGQPLSSPKKNSGSAARPSTAIGLCR---RSQTPG----ALQSTG------------P 237
Query: 250 SRPEDHPQTHLHAVKSSAATADDAVA--IGTSTAWLGEGPVALAQQLPPKPQVLPTQR 305
S E P+ + + A DD + +G S +G+G VA+A ++ PK P R
Sbjct: 238 SNTELEPEERMAVPAGAQAHPDDIQSRLLGASGNPVGKGAVAMAPEMLPKHPHTPRDR 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,138,834
Number of Sequences: 37866
Number of extensions: 730135
Number of successful extensions: 2363
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2337
Number of HSP's gapped (non-prelim): 63
length of query: 367
length of database: 18,247,518
effective HSP length: 104
effective length of query: 263
effective length of database: 14,309,454
effective search space: 3763386402
effective search space used: 3763386402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.