Guide to the Human Genome
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Name: CDC27 Sequence: fasta or formatted (824aa) NCBI GI: 167466175
Description:

cell division cycle protein 27 isoform 2

Referenced in:

Anaphase-promoting Complex
Additional Cell Cycle Functions
Tetratricopeptide Domains

Other entries for this name:
alt prot [830aa] cell division cycle protein 27 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         57           3
 C cysteine            2.3         19           2
 D aspartate           4.5         37           2
 E glutamate           6.4         53           2
 F phenylalanine       3.5         29           2
 G glycine             4.9         40           2
 H histidine           2.4         20           2
 I isoleucine          5.2         43           2
 K lysine              7.2         59           2
 L leucine            10.7         88           2
 M methionine          1.6         13           1
 N asparagine          4.7         39           2
 P proline             5.6         46           2
 Q glutamine           5.2         43           1
 R arginine            3.3         27           2
 S serine              9.8         81           2
 T threonine           6.7         55           2
 V valine              4.4         36           2
 W tryptophan          0.8          7           1
 Y tyrosine            3.9         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell division cycle protein 27 isoform 2 
CDC27                 0.996   cell division cycle protein 27 isoform 1 
LOC730535             0.064   PREDICTED: similar to Cell division cycle 27 homolo...
LOC730535             0.064   PREDICTED: similar to Cell division cycle 27 homolo...
CDC23                 0.060   cell division cycle protein 23 
TTC6                  0.035   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.035   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.035   PREDICTED: chromosome 14 open reading frame 25 [Hom...
CDC16                 0.034   anaphase-promoting complex, subunit 6 
CDC16                 0.034   anaphase-promoting complex, subunit 6 
OGT                   0.032   O-linked GlcNAc transferase isoform 2 
OGT                   0.032   O-linked GlcNAc transferase isoform 1 
ANAPC7                0.026   anaphase-promoting complex subunit 7 isoform a [Hom...
TMTC1                 0.023   transmembrane and tetratricopeptide repeat containin...
BBS4                  0.020   Bardet-Biedl syndrome 4 
TMTC4                 0.020   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.020   transmembrane and tetratricopeptide repeat containi...
PEX5                  0.018   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.018   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.018   peroxisomal biogenesis factor 5 isoform c 
PEX5                  0.018   peroxisomal biogenesis factor 5 isoform a 
PEX5                  0.018   peroxisomal biogenesis factor 5 isoform b 
TMTC3                 0.018   transmembrane and tetratricopeptide repeat containi...
ANAPC7                0.018   anaphase-promoting complex subunit 7 isoform b [Hom...
TTC13                 0.018   tetratricopeptide repeat domain 13 isoform a 
TTC13                 0.018   tetratricopeptide repeat domain 13 isoform b 
TTC8                  0.017   tetratricopeptide repeat domain 8 isoform A 
TTC8                  0.017   tetratricopeptide repeat domain 8 isoform C 
TTC8                  0.017   tetratricopeptide repeat domain 8 isoform B 
TOMM70A               0.017   translocase of outer mitochondrial membrane 70 homol...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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