Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239752184

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo
sapiens]
         (270 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757699 PREDICTED: hypothetical protein [Homo sapiens]           561   e-160
gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo ...   561   e-160
gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo ...   561   e-160
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre...    45   5e-05
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    45   5e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     44   1e-04
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    44   1e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      43   3e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      41   0.001
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                40   0.002
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    40   0.002
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    40   0.002
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    40   0.002
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    40   0.002
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      39   0.005
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       39   0.006
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          39   0.006
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi...    38   0.008
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    38   0.011
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    38   0.011
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    38   0.011
gi|153792074 proline rich 12 [Homo sapiens]                            38   0.011
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa...    37   0.014
gi|39812378 RAN binding protein 9 [Homo sapiens]                       37   0.014
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            37   0.014
gi|91208420 bassoon protein [Homo sapiens]                             37   0.014
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]      37   0.014
gi|94818738 C1q and tumor necrosis factor related protein 2 [Hom...    37   0.014

>gi|239757699 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 270

 Score =  561 bits (1447), Expect = e-160
 Identities = 270/270 (100%), Positives = 270/270 (100%)

Query: 1   MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
           MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA
Sbjct: 1   MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60

Query: 61  GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
           GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP
Sbjct: 61  GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120

Query: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
           PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG
Sbjct: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180

Query: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
           LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL
Sbjct: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240

Query: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
           SVLLLANSEEGSEIWGKCWSLGRPAPQPSH
Sbjct: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270


>gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo
           sapiens]
          Length = 270

 Score =  561 bits (1447), Expect = e-160
 Identities = 270/270 (100%), Positives = 270/270 (100%)

Query: 1   MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
           MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA
Sbjct: 1   MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60

Query: 61  GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
           GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP
Sbjct: 61  GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120

Query: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
           PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG
Sbjct: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180

Query: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
           LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL
Sbjct: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240

Query: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
           SVLLLANSEEGSEIWGKCWSLGRPAPQPSH
Sbjct: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270


>gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo
           sapiens]
          Length = 270

 Score =  561 bits (1447), Expect = e-160
 Identities = 270/270 (100%), Positives = 270/270 (100%)

Query: 1   MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
           MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA
Sbjct: 1   MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60

Query: 61  GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
           GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP
Sbjct: 61  GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120

Query: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
           PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG
Sbjct: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180

Query: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
           LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL
Sbjct: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240

Query: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
           SVLLLANSEEGSEIWGKCWSLGRPAPQPSH
Sbjct: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270


>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
           preproprotein [Homo sapiens]
          Length = 178

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP PP   P+ P   G          + PQ PPPPG        G++ R   +  GK 
Sbjct: 47  PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 97

Query: 145 QGP----GNPEGP 153
           QGP    G P+GP
Sbjct: 98  QGPPPQGGKPQGP 110



 Score = 36.2 bits (82), Expect = 0.031
 Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 25/132 (18%)

Query: 31  EVPGLSFGGPQLSTP--GQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGP 88
           E P L  G PQ  +P  G   +      G   G    G  K +     P P     PQGP
Sbjct: 27  ESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGP---PPP---GKPQGP 80

Query: 89  RPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKA--GNRPRLRGTAGGKAQG 146
            P           GD+    R+    PQ PPP G       A  G++ +   +  GK QG
Sbjct: 81  PPQ----------GDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQG 130

Query: 147 P-----GNPEGP 153
           P      NP+GP
Sbjct: 131 PPQQEGNNPQGP 142


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP PP   P+ P   G          + PQ PPPPG        G++ R   +  GK 
Sbjct: 47  PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 97

Query: 145 QGP----GNPEGP 153
           QGP    G P+GP
Sbjct: 98  QGPPPQGGKPQGP 110



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 38/142 (26%), Positives = 49/142 (34%), Gaps = 25/142 (17%)

Query: 31  EVPGLSFGGPQLSTP--GQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGP 88
           E P L  G PQ  +P  G   +      G   G    G  K +     P P     PQGP
Sbjct: 27  ESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGP---PPP---GKPQGP 80

Query: 89  RPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSR------------RKAGNRPRL 136
            P     R P     +  G       PQ PPP G    +             + G++ + 
Sbjct: 81  PPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQS 140

Query: 137 RGTAGGKAQGP-----GNPEGP 153
             +  GK QGP      NP+GP
Sbjct: 141 ARSPPGKPQGPPQQEGNNPQGP 162



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR-LRGTAGGK 143
           PQGP PP      P   G +   AR+    PQ PP        ++ GN P+     AGG 
Sbjct: 118 PQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPP--------QQEGNNPQGPPPPAGGN 169

Query: 144 AQGP-----GNPEGP 153
            Q P     G P+GP
Sbjct: 170 PQQPQAPPAGQPQGP 184


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 39/128 (30%), Positives = 48/128 (37%), Gaps = 27/128 (21%)

Query: 31  EVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRP 90
           E P L  G PQ + P               G +  G      +   P P     PQGP P
Sbjct: 27  ESPSLIAGNPQGAPP-------------QGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPP 73

Query: 91  PSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGP--- 147
           P   P+ P   G          + PQ PPPPG        G++ R   +  GK QGP   
Sbjct: 74  PPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ 124

Query: 148 -GN-PEGP 153
            GN P+GP
Sbjct: 125 GGNQPQGP 132



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAG-NRPRLRGTAGGK 143
           PQGP PP   P+ P   G          + PQ PPPPG        G N+ R   +  GK
Sbjct: 129 PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGK 179

Query: 144 AQGP----GN-PEGP 153
            QGP    GN P+GP
Sbjct: 180 PQGPPPQGGNQPQGP 194



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 15/75 (20%)

Query: 85  PQGPRPPSSSPRWPWGLGD-RLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK 143
           PQGP PP   P+ P   GD +   AR+    PQ PPP G        GN+P+      GK
Sbjct: 212 PQGPPPP-GKPQGPPPQGDNKSQSARSPPGKPQGPPPQG--------GNQPQGPPPPPGK 262

Query: 144 AQGP----GN-PEGP 153
            QGP    GN P+GP
Sbjct: 263 PQGPPPQGGNKPQGP 277



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP PP   P+ P   G            PQ PPP G        G++ R   +  GK 
Sbjct: 315 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG--------GSKSRSARSPPGKP 366

Query: 145 QGP-----GNPEGP 153
           QGP      NP+GP
Sbjct: 367 QGPPQQEGNNPQGP 380



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 17/76 (22%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEP--PPPGSTVSRRKAGNRPRLRGTAGG 142
           PQGP PP   P+ P   GD    +R+SRS P +P  PPP       + GN+P+      G
Sbjct: 150 PQGPPPP-GKPQGPPPQGDN--KSRSSRSPPGKPQGPPP-------QGGNQPQGPPPPPG 199

Query: 143 KAQGP----GN-PEGP 153
           K QGP    GN P+GP
Sbjct: 200 KPQGPPPQGGNKPQGP 215



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP PP      P   G +   +R+    PQ PPP G        GN+P+      GK 
Sbjct: 274 PQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQG--------GNQPQGPPPPPGKP 325

Query: 145 QGP----GN-PEGP 153
           QGP    GN P+GP
Sbjct: 326 QGPPPQGGNKPQGP 339



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 23/74 (31%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP P           GD+    R+    PQ PPP G        GN+P+      GK 
Sbjct: 98  PQGPPPQ----------GDKSRSPRSPPGKPQGPPPQG--------GNQPQGPPPPPGKP 139

Query: 145 QGP----GN-PEGP 153
           QGP    GN P+GP
Sbjct: 140 QGPPPQGGNKPQGP 153



 Score = 34.7 bits (78), Expect = 0.090
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR-LRGTAGGK 143
           PQGP PP      P   G +   AR+    PQ PP        ++ GN P+     AGG 
Sbjct: 336 PQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPP--------QQEGNNPQGPPPPAGGN 387

Query: 144 AQGP-----GNPEGP 153
            Q P     G P+GP
Sbjct: 388 PQQPQAPPAGQPQGP 402


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP PP   P+ P   G +          PQ PPPPG        G++ R   +  GK 
Sbjct: 169 PQGPPPPPGKPQGPPPQGGKK---------PQGPPPPGKPQGPPPQGDKSRSSQSPPGKP 219

Query: 145 QGP----GN-PEGP 153
           QGP    GN P+GP
Sbjct: 220 QGPPPQGGNQPQGP 233



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP PP   P+ P   G          + PQ PPPPG        G++ R   +  GK 
Sbjct: 47  PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 97

Query: 145 QGP----GN-PEGP 153
           QGP    GN P+GP
Sbjct: 98  QGPPPQGGNQPQGP 111



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP PP   P+ P   G          + PQ PPPPG        G++ R   +  GK 
Sbjct: 108 PQGPPPPPGKPQGPPPQGG---------NRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 158

Query: 145 QGP----GN-PEGP 153
           QGP    GN P+GP
Sbjct: 159 QGPPPQGGNQPQGP 172



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 14/74 (18%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP PP   P+ P   GD+   +++    PQ PPP G        GN+P+      GK 
Sbjct: 190 PQGP-PPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQG--------GNQPQGPPPPPGKP 240

Query: 145 QGP----GN-PEGP 153
           QGP    GN P+GP
Sbjct: 241 QGPPPQGGNKPQGP 254



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVS-RRKAGNRPRLRGTAGGK 143
           PQGP PP   P+ P   G          + PQ PPPPG       + G++ +   +  GK
Sbjct: 230 PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPAQGGSKSQSARSPPGK 280

Query: 144 AQGP-----GNPEGP 153
            QGP      NP+GP
Sbjct: 281 PQGPPQQEGNNPQGP 295



 Score = 37.7 bits (86), Expect = 0.011
 Identities = 48/145 (33%), Positives = 55/145 (37%), Gaps = 29/145 (20%)

Query: 31  EVPGLSFGGPQLSTP--GQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGP 88
           E P L  G PQ  +P  G   +      G   G    G  K +     P P     PQGP
Sbjct: 27  ESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGP---PPP---GKPQGP 80

Query: 89  RP---PSSSPRWPWGL--------GDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLR 137
            P    S SPR P G         G++  G       PQ PPP G        GNRP+  
Sbjct: 81  PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG--------GNRPQ-G 131

Query: 138 GTAGGKAQGPGNPEGPSSLLPRLLP 162
               GK QGP  P+G  S  PR  P
Sbjct: 132 PPPPGKPQGP-PPQGDKSRSPRSPP 155



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR-LRGTAGGK 143
           PQGP PP      P   G +   AR+    PQ PP        ++ GN P+     AGG 
Sbjct: 251 PQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPP--------QQEGNNPQGPPPPAGGN 302

Query: 144 AQGP-----GNPEGP 153
            Q P     G P+GP
Sbjct: 303 PQQPQAPPAGQPQGP 317



 Score = 33.9 bits (76), Expect = 0.15
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 23/74 (31%)

Query: 85  PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
           PQGP P           GD+    R+    PQ PPP G        GN+P+      GK 
Sbjct: 138 PQGPPPQ----------GDKSRSPRSPPGKPQGPPPQG--------GNQPQGPPPPPGKP 179

Query: 145 QGP-----GNPEGP 153
           QGP       P+GP
Sbjct: 180 QGPPPQGGKKPQGP 193


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 40/124 (32%), Positives = 43/124 (34%), Gaps = 24/124 (19%)

Query: 33  PGLSFGGPQL-STPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
           PG S G P L  TPG+D E G   A G  G                     P P GPR  
Sbjct: 415 PG-SVGAPGLRGTPGKDGERGEKGAAGEEGS--------------------PGPVGPRGD 453

Query: 92  SSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAG--NRPRLRGTAGGKAQGPGN 149
             +P  P   G    G    R  P  P P G+   R   G    P  RG  G    GP  
Sbjct: 454 PGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPG 513

Query: 150 PEGP 153
           P GP
Sbjct: 514 PSGP 517



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 29/166 (17%)

Query: 41  QLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWG 100
           +L  PG   + G     G AG    GL    +  ++P P  +P  QGP+     P  P  
Sbjct: 308 ELGLPGLKGDRGEKGEAGPAGPP--GLPGTTS-LFTPHPR-MPGEQGPKGEKGDPGLP-- 361

Query: 101 LGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG--GKAQGPGNPEGPSSLLP 158
            G+  L  R    GPQ P  P     +  A   P   G  G  G    PG P GP   + 
Sbjct: 362 -GEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPG-PSGPPGSV- 418

Query: 159 RLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG 204
                    GA          GLR  P +  + G + + G   SPG
Sbjct: 419 ---------GAP---------GLRGTPGKDGERGEKGAAGEEGSPG 446



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 27/150 (18%)

Query: 8   DICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGL 67
           D+C   P  P G            +PGL         PG+    G +   G AG   +  
Sbjct: 559 DVCNDCPPGPPG------------LPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGL-- 604

Query: 68  QKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR-LLGARASRSGPQEPPPPGSTVS 126
                    P P  +  PQG +    +       GD+   G       P  P PPG+   
Sbjct: 605 ---------PGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGI 655

Query: 127 RRKAGNRPRLRGTAGGKAQGPGNPEGPSSL 156
              AG  P ++G+ G   +GP  P+GPS L
Sbjct: 656 AGAAGP-PGIQGSPG--KEGPPGPQGPSGL 682


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 36/125 (28%), Positives = 43/125 (34%), Gaps = 4/125 (3%)

Query: 33  PGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPS 92
           PG +        PG D + GA  A GA G    G            P     P GP+  S
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGI--AGAPGFPGARGPSGPQGPGGPPGPKGNS 433

Query: 93  SSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG--GKAQGPGNP 150
             P  P   GD          G Q PP P     +R A   P   G  G  G+  GPG+ 
Sbjct: 434 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSR 493

Query: 151 EGPSS 155
             P +
Sbjct: 494 GFPGA 498



 Score = 33.9 bits (76), Expect = 0.15
 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 79   PICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPP-PPGSTVSRRKAGNRPRLR 137
            P+    P GP+ P          GDR +      SG Q PP PPGS          P  +
Sbjct: 1080 PVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGS----------PGEQ 1129

Query: 138  GTAGGKAQGPGNPEGP 153
            G +G  A GP  P GP
Sbjct: 1130 GPSG--ASGPAGPRGP 1143



 Score = 32.3 bits (72), Expect = 0.45
 Identities = 40/143 (27%), Positives = 49/143 (34%), Gaps = 20/143 (13%)

Query: 20  GLGGALLIVTVEVPGLSFGGPQLST-----PGQDREAGADTAGGAAGERQVGLQKIEAEW 74
           GLGG         P LS+G  + ST     PG    +G     G  G    G Q  +   
Sbjct: 154 GLGGNF------APQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAP--GPQGFQGPP 205

Query: 75  WSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRP 134
             P       P GPR P   P  P   GD     +  R G + PP P            P
Sbjct: 206 GEPGEPGASGPMGPRGP---PGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLP 262

Query: 135 RLRGTAG----GKAQGPGNPEGP 153
            ++G  G      A+G   P GP
Sbjct: 263 GMKGHRGFSGLDGAKGDAGPAGP 285



 Score = 31.2 bits (69), Expect = 1.00
 Identities = 53/184 (28%), Positives = 63/184 (34%), Gaps = 32/184 (17%)

Query: 45   PGQDREAGADTAGGAAGER----QVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWG 100
            PG     GA  A GA G        G          P P     P GP  P+        
Sbjct: 850  PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP 909

Query: 101  LGDRLLGARASRSGPQEPPPP----GSTVSRRKAG--NRPRLRGTAG-----------GK 143
             G+     R    GP  PP P    GS  +   AG    P  +G AG           G+
Sbjct: 910  RGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE 969

Query: 144  AQGPGNPEGPSSLLPRLLPLLLLSGATRDR---RRLWGEGLRLAPRRSRDEGRRASPGNL 200
               PG P GPS    +  P    SGA+ +R     +   GL   P  S   GR  +PG  
Sbjct: 970  RGFPGLP-GPSGEPGKQGP----SGASGERGPPGPMGPPGLAGPPGES---GREGAPGAE 1021

Query: 201  ASPG 204
             SPG
Sbjct: 1022 GSPG 1025


>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 50/187 (26%), Positives = 68/187 (36%), Gaps = 42/187 (22%)

Query: 56  AGGAAGERQVGLQKIEAEWWSPWPICLPHPQG--PRPPSSSPRW----------PWGLGD 103
           AG A   R  GL +     W+      P P+G  PR P  SP              G+G 
Sbjct: 15  AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGG 74

Query: 104 RLLGARA-------------------SRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
            + GA+                     R G ++PPP G  V+       PR+ G  G   
Sbjct: 75  GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVN-------PRVAGVDGLDR 127

Query: 145 QGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG 204
            G  +P G    + ++L L +L GA R RR L G+ L L  +     G          P 
Sbjct: 128 GGRLDPAG----IGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183

Query: 205 LRLRCRL 211
            + R RL
Sbjct: 184 GQHRARL 190


>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 50/187 (26%), Positives = 68/187 (36%), Gaps = 42/187 (22%)

Query: 56  AGGAAGERQVGLQKIEAEWWSPWPICLPHPQG--PRPPSSSPRW----------PWGLGD 103
           AG A   R  GL +     W+      P P+G  PR P  SP              G+G 
Sbjct: 15  AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGG 74

Query: 104 RLLGARA-------------------SRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
            + GA+                     R G ++PPP G  V+       PR+ G  G   
Sbjct: 75  GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVN-------PRVAGVDGLDR 127

Query: 145 QGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG 204
            G  +P G    + ++L L +L GA R RR L G+ L L  +     G          P 
Sbjct: 128 GGRLDPAG----IGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183

Query: 205 LRLRCRL 211
            + R RL
Sbjct: 184 GQHRARL 190


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 63/233 (27%), Positives = 80/233 (34%), Gaps = 35/233 (15%)

Query: 41   QLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWG 100
            +L  PG   + G     G AG    GL    +  ++P P  +P  QGP+     P  P  
Sbjct: 826  ELGLPGLKGDRGEKGEAGPAGPP--GLPGTTS-LFTPHPR-MPGEQGPKGEKGDPGLP-- 879

Query: 101  LGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG--GKAQGPGNPEGPSSLLP 158
             G+  L  R    GPQ P  P     +  A   P   G  G  G    PG P GP     
Sbjct: 880  -GEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPG-PSGPPG--- 934

Query: 159  RLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG-LRLRCRLDLPGL- 216
                             +   GLR  P +  + G + + G   SPG +  R     PGL 
Sbjct: 935  ----------------SVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLP 978

Query: 217  GLRDLGARSSSVLSSSPSELVPELSVLLLANSEEGSE---IWGKCWSLGRPAP 266
            G    G      L  SP  L   L          GSE   + G+C    R AP
Sbjct: 979  GPPGKGKDGEPGLRGSPG-LPGPLGTKAACGKVRGSENCALGGQCVKGDRGAP 1030



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 51/192 (26%), Positives = 59/192 (30%), Gaps = 54/192 (28%)

Query: 33   PGLSFGGPQL-STPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
            PG S G P L  TPG+D E G   A G  G                     P P GPR  
Sbjct: 933  PG-SVGAPGLRGTPGKDGERGEKGAAGEEGS--------------------PGPVGPRGD 971

Query: 92   SSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKA--------------GNR---- 133
              +P  P   G    G    R  P  P P G+  +  K               G+R    
Sbjct: 972  PGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPG 1031

Query: 134  -PRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEG 192
             P   G+ G    G   P GP             SG   D+      GL   P      G
Sbjct: 1032 IPGSPGSRGDPGIGVAGPPGP-------------SGPPGDKGSPGSRGLPGFPGPQGPAG 1078

Query: 193  RRASPGNLASPG 204
            R  +PGN    G
Sbjct: 1079 RDGAPGNPGERG 1090



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 27/150 (18%)

Query: 8    DICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGL 67
            D+C   P  P G            +PGL         PG+    G +   G AG   +  
Sbjct: 1112 DVCNDCPPGPPG------------LPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGL-- 1157

Query: 68   QKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR-LLGARASRSGPQEPPPPGSTVS 126
                     P P  +  PQG +    +       GD+   G       P  P PPG+   
Sbjct: 1158 ---------PGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGI 1208

Query: 127  RRKAGNRPRLRGTAGGKAQGPGNPEGPSSL 156
               AG  P ++G+ G   +GP  P+GPS L
Sbjct: 1209 AGAAGP-PGIQGSPG--KEGPPGPQGPSGL 1235



 Score = 32.0 bits (71), Expect = 0.58
 Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 35  LSFGGPQLSTPGQDREAGADTAGGAAGER----QVGLQKI-EAEWWSPWPICLPHPQGPR 89
           +   GP +  PG   + GA    GA G +     VG+    + E      + LP P G  
Sbjct: 486 MGVAGP-MGLPGPKGDIGAIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGPPGRD 544

Query: 90  PPSSSPRWPWGLGDRLLGARASRSGPQEPP----PPGSTVSRRKAGNRPRLRGTAGGKAQ 145
                   P  LG+  L       GPQ PP    PPG   +    G R   +GT G K +
Sbjct: 545 GSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGE-KGTRGEKGE 603

Query: 146 G-----PGNP 150
                 PG P
Sbjct: 604 RGLDGFPGKP 613



 Score = 28.5 bits (62), Expect = 6.5
 Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 33  PGLSFGGPQLSTPGQDREAGADTAGGAAGERQV----GLQKIEAEWWSPWPICLPHPQGP 88
           PGL     ++  PG   E G     G  GER +    G      +   P P  +  PQG 
Sbjct: 574 PGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGE 633

Query: 89  R---PPSSSPRWPWGL-------GDRLLGARASRSGPQEPPPPGS--TVSRRKAGNRPRL 136
           +    P+  P  P  +       G++  GA   R     P PPG+   +        P L
Sbjct: 634 KGDVGPAGPPGVPGSVVQQEGLKGEQ--GAPGPRGHQGAPGPPGARGPIGPEGRDGPPGL 691

Query: 137 RGTAGGKAQGPGNPEGPSSLL 157
           +G  G K  G   P G   LL
Sbjct: 692 QGLRGKK--GDMGPPGIPGLL 710


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 36/148 (24%)

Query: 38  GGPQLSTPGQDREAGADTAGGAAGERQV-----GLQKIEAEWWSPWPIC----------- 81
           GGP     G+  + G     G  G R        +Q    +W  P P C           
Sbjct: 425 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC 484

Query: 82  ----LPHPQG----PRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNR 133
                P P+G    P PP    R   G G    G R  R G  +   PG      + G+R
Sbjct: 485 NQCKAPKPEGFLPPPFPPPGGDRGRGGPG----GMRGGRGGLMDRGGPGGMFRGGRGGDR 540

Query: 134 PRLRGT--------AGGKAQGPGNPEGP 153
              RG          GG+  GPG P GP
Sbjct: 541 GGFRGGRGMDRGGFGGGRRGGPGGPPGP 568


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 36/148 (24%)

Query: 38  GGPQLSTPGQDREAGADTAGGAAGERQV-----GLQKIEAEWWSPWPIC----------- 81
           GGP     G+  + G     G  G R        +Q    +W  P P C           
Sbjct: 480 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC 539

Query: 82  ----LPHPQG----PRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNR 133
                P P+G    P PP    R   G G    G R  R G  +   PG      + G+R
Sbjct: 540 NQCKAPKPEGFLPPPFPPPGGDRGRGGPG----GMRGGRGGLMDRGGPGGMFRGGRGGDR 595

Query: 134 PRLRGT--------AGGKAQGPGNPEGP 153
              RG          GG+  GPG P GP
Sbjct: 596 GGFRGGRGMDRGGFGGGRRGGPGGPPGP 623


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 36/148 (24%)

Query: 38  GGPQLSTPGQDREAGADTAGGAAGERQV-----GLQKIEAEWWSPWPIC----------- 81
           GGP     G+  + G     G  G R        +Q    +W  P P C           
Sbjct: 486 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC 545

Query: 82  ----LPHPQG----PRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNR 133
                P P+G    P PP    R   G G    G R  R G  +   PG      + G+R
Sbjct: 546 NQCKAPKPEGFLPPPFPPPGGDRGRGGPG----GMRGGRGGLMDRGGPGGMFRGGRGGDR 601

Query: 134 PRLRGT--------AGGKAQGPGNPEGP 153
              RG          GG+  GPG P GP
Sbjct: 602 GGFRGGRGMDRGGFGGGRRGGPGGPPGP 629


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 36/148 (24%)

Query: 38  GGPQLSTPGQDREAGADTAGGAAGERQV-----GLQKIEAEWWSPWPIC----------- 81
           GGP     G+  + G     G  G R        +Q    +W  P P C           
Sbjct: 481 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC 540

Query: 82  ----LPHPQG----PRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNR 133
                P P+G    P PP    R   G G    G R  R G  +   PG      + G+R
Sbjct: 541 NQCKAPKPEGFLPPPFPPPGGDRGRGGPG----GMRGGRGGLMDRGGPGGMFRGGRGGDR 596

Query: 134 PRLRGT--------AGGKAQGPGNPEGP 153
              RG          GG+  GPG P GP
Sbjct: 597 GGFRGGRGMDRGGFGGGRRGGPGGPPGP 624


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 50/176 (28%), Positives = 60/176 (34%), Gaps = 18/176 (10%)

Query: 38  GGPQL-STPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPR 96
           GGP +   PG     G+D   G  G         + E   P P   P P GPR       
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGS--------QGESGRPGP---PGPSGPRGQPGVMG 579

Query: 97  WPWGLG-DRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSS 155
           +P   G D   G    R GP  P P G      + G +     T  G  +G   P GP  
Sbjct: 580 FPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639

Query: 156 L--LPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRD---EGRRASPGNLASPGLR 206
           L  LP        +G   +       G   AP    D    G R  PG   +PGLR
Sbjct: 640 LQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695



 Score = 37.7 bits (86), Expect = 0.011
 Identities = 53/189 (28%), Positives = 63/189 (33%), Gaps = 33/189 (17%)

Query: 20  GLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWP 79
           GL GA        PGL  G       G    AG     GAAG    GLQ +  E      
Sbjct: 687 GLAGA--------PGLRGGAGPPGPEGGKGAAGPPGPPGAAGTP--GLQGMPGERGG--- 733

Query: 80  ICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGT 139
             L  P GP+     P  P   G          +GP  PP P      +  G  P L G 
Sbjct: 734 --LGSP-GPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGI 790

Query: 140 AGGKA----QGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRA 195
           AG +     +G   P GP+             GA        G+G R AP    ++G   
Sbjct: 791 AGPRGSPGERGETGPPGPAG----------FPGAPGQNGEPGGKGERGAP---GEKGEGG 837

Query: 196 SPGNLASPG 204
            PG    PG
Sbjct: 838 PPGVAGPPG 846



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 49/184 (26%), Positives = 61/184 (33%), Gaps = 37/184 (20%)

Query: 45  PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSS---PRWPWGL 101
           PG     G D   G  GE   G   ++ E   P     P P GPR        P  P   
Sbjct: 260 PGMKGHRGFDGRNGEKGE--TGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAA 317

Query: 102 GDRLL-GARASRSGPQEPPPPGSTVSRRKAGNR--------------PRLRGTAGGK--- 143
           G R   GAR S   P  P PPG+       G +              P  RG  G +   
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHA 377

Query: 144 -AQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLAS 202
            AQGP  P G             ++G+   +  +   G+  AP      G     G   +
Sbjct: 378 GAQGPPGPPG-------------INGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGA 424

Query: 203 PGLR 206
           PGLR
Sbjct: 425 PGLR 428



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 49/181 (27%), Positives = 66/181 (36%), Gaps = 27/181 (14%)

Query: 32  VPGLSFGGPQLSTPGQDREAGADTAGGAAGER-------QVGLQKIEAEWWSPWPICLPH 84
           +PG+     +    G   E GA+   GAAGER         G   I  E         P 
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPG 513

Query: 85  PQGPRPPSSSP---RWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG 141
           P GPR  +  P     P G G R  G   S  GP     PG   S+ ++G RP   G +G
Sbjct: 514 PAGPRGAAGEPGRDGVPGGPGMR--GMPGSPGGPGSDGKPGPPGSQGESG-RPGPPGPSG 570

Query: 142 GKAQ----GPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASP 197
            + Q    G   P+G               G   +R    G G +  P ++ + G +  P
Sbjct: 571 PRGQPGVMGFPGPKGNDG----------APGKNGERGGPGGPGPQGPPGKNGETGPQGPP 620

Query: 198 G 198
           G
Sbjct: 621 G 621



 Score = 33.9 bits (76), Expect = 0.15
 Identities = 48/202 (23%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 33  PGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWS---------------P 77
           PG+         PGQ    G+    G       G Q    ++ S               P
Sbjct: 114 PGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYP 173

Query: 78  WPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPP-PPGSTVSRRKAG----- 131
            P   P P GP   S  P  P   G +       ++GP  PP PPG+      AG     
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES 233

Query: 132 NRPRLRGTAGGKAQGPGNPEGPSSL--LPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSR 189
            RP   G  G    GP   +GP+ +   P +       G   ++      GL+       
Sbjct: 234 GRPGRPGERG--LPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPG 291

Query: 190 DEGR------RASPGNLASPGL 205
           + G       R +PG    PGL
Sbjct: 292 ENGAPGPMGPRGAPGERGRPGL 313



 Score = 32.7 bits (73), Expect = 0.34
 Identities = 47/172 (27%), Positives = 58/172 (33%), Gaps = 30/172 (17%)

Query: 39   GPQLSTPGQDREAGADTAGGAAGER----QVGLQKIEAEWWSPWPICLPHPQGPRPPSSS 94
            GPQ    G   E+G   A G +GER      GL  +      P     P   G      S
Sbjct: 972  GPQ----GVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS 1027

Query: 95   PRWPWGLGDR-LLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEG- 152
            P    G GDR   G+  +   P  P PPG      K+G+R          A GP    G 
Sbjct: 1028 PG---GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA 1084

Query: 153  PSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG 204
            P    PR        G   +       G++         G R  PGN  +PG
Sbjct: 1085 PGPQGPR--------GDKGETGERGAAGIK---------GHRGFPGNPGAPG 1119



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 42/161 (26%), Positives = 52/161 (32%), Gaps = 42/161 (26%)

Query: 46   GQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR- 104
            G+   AG   A G AG R                   P PQGPR            G+R 
Sbjct: 1065 GESGPAGPAGAPGPAGSRGA-----------------PGPQGPRGDKGET------GERG 1101

Query: 105  LLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLL 164
              G +  R  P  P  PGS      AG +  +        +GP  P GP           
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSP---GPAGQQGAIGSPGPAGPRGPVGPSGPPG--------- 1149

Query: 165  LLSGATRDRRRLWGEGLRLAPRRSRDE-GRRASPGNLASPG 204
               G +     +   G    PR +R E G   SPG+   PG
Sbjct: 1150 -KDGTSGHPGPIGPPG----PRGNRGERGSEGSPGHPGQPG 1185



 Score = 30.0 bits (66), Expect = 2.2
 Identities = 46/181 (25%), Positives = 53/181 (29%), Gaps = 41/181 (22%)

Query: 45  PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
           PG   E GA    G AG R  G      E   P P   P   G          P G G+R
Sbjct: 776 PGDKGEGGAPGLPGIAGPR--GSPGERGETGPPGPAGFPGAPGQNGE------PGGKGER 827

Query: 105 LLGARASR--------------SGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK------- 143
             GA   +              SGP  PP P      R +   P   G  G +       
Sbjct: 828 --GAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPG 885

Query: 144 AQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASP 203
           + G   P GPS             G           G   +P  S  +G    PG   SP
Sbjct: 886 SNGNPGPPGPSG----------SPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSP 935

Query: 204 G 204
           G
Sbjct: 936 G 936


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 40/132 (30%), Positives = 52/132 (39%), Gaps = 16/132 (12%)

Query: 83   PHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPP-------PPGSTVSRRKAGNRPR 135
            P PQGP  P+     P   G +    R    GP   P       PPG    + + G  P 
Sbjct: 1107 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIG-EPG 1165

Query: 136  LRGTAGGKA-QGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRR 194
             +G+ G K  QGP  P GP   + +  P    SGA  +      +GL     +  DEG R
Sbjct: 1166 QKGSKGDKGEQGPPGPTGPQGPIGQPGP----SGADGEPGPRGQQGLF---GQKGDEGPR 1218

Query: 195  ASPGNLASPGLR 206
              PG     GL+
Sbjct: 1219 GFPGPPGPVGLQ 1230



 Score = 37.0 bits (84), Expect = 0.018
 Identities = 41/142 (28%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 17   PDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWS 76
            P G  G   L   V +PG +  GP +  PG+D + G     G     Q G +  + E   
Sbjct: 1127 PQGPAGRDGLQGPVGLPGPA--GP-VGPPGEDGDKGEIGEPG-----QKGSKGDKGEQGP 1178

Query: 77   PWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRL 136
            P P     P G   PS +   P   G + L  +    GP+  P P   V  +     P  
Sbjct: 1179 PGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGE 1238

Query: 137  RGTAGGKAQ----GPGNPEGPS 154
            +G  G   Q    GP  P GPS
Sbjct: 1239 KGETGDVGQMGPPGPPGPRGPS 1260



 Score = 32.7 bits (73), Expect = 0.34
 Identities = 51/176 (28%), Positives = 61/176 (34%), Gaps = 27/176 (15%)

Query: 45   PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
            PG    +G D   G  GER     +         P   P P+GP  P      P   G R
Sbjct: 930  PGPKGNSGGDGPAGPPGERGPNGPQ--------GPTGFPGPKGPPGPPGKDGLPGHPGQR 981

Query: 105  LLGARASRSGPQEPP----PPGSTVSRRKAGNR--------PRLRGTAG--GKAQGPGNP 150
                   ++GP  PP    P G T      G R        P  +G  G  GK    G+P
Sbjct: 982  GETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDP 1041

Query: 151  EGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
             GP+ L  +  P   L G   DR      G   A     +EG    PG   SPG R
Sbjct: 1042 -GPAGLPGKDGP-PGLRGFPGDRGLPGPVG---ALGLKGNEGPPGPPGPAGSPGER 1092



 Score = 32.7 bits (73), Expect = 0.34
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 83   PHPQGPRPPSSSPRW------PWGLGD-RLLGARASRSGPQEPPPPGSTVSRRKAGNRPR 135
            P P GPR PS +P        P G+G+   +G +       EP  PG        G R  
Sbjct: 1251 PGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGE 1310

Query: 136  LRGTAGGKAQGPGNPEGP 153
               +    A GP  P+GP
Sbjct: 1311 KGESGPSGAAGPPGPKGP 1328



 Score = 28.1 bits (61), Expect = 8.4
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 29/130 (22%)

Query: 31  EVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPW--PICLPHPQGP 88
           E+P  +      S P      GAD   G   E  +  + ++  ++ P+  P   P   GP
Sbjct: 375 EIPTSTADTSNSSNPAPPPGEGADDLEGEFTEETI--RNLDENYYDPYYDPTSSPSEIGP 432

Query: 89  RPPSSSPRWPWGLGDRLLGARASRSGPQEPP--PPGSTVSRRKAGNRPRLRGTAGGKAQG 146
             P++      G+G    G R  +    EP    PG  +                   +G
Sbjct: 433 GMPANQDTIYEGIG----GPRGEKGQKGEPAIIEPGMLI-------------------EG 469

Query: 147 PGNPEGPSSL 156
           P  PEGP+ L
Sbjct: 470 PPGPEGPAGL 479


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 50/181 (27%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 33   PGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPS 92
            PG +    +   PG D   G+    G  G    G   ++     P P   P  +GPR P 
Sbjct: 1289 PGSATAKGERGFPGADGRPGSPGRAGNPGTP--GAPGLKGSPGLPGPRGDPGERGPRGPK 1346

Query: 93   SSPRWPW----GLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTA--GGKA-Q 145
              P  P     G G  L G R    GP  PP P   +        P L GTA  G K  +
Sbjct: 1347 GEPGAPGQVIGGEGPGLPG-RKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDR 1405

Query: 146  GPGNPEGP--SSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASP 203
            G   P GP    + P    L  L G+   +  +   G +   +   ++G    PG   SP
Sbjct: 1406 GERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPG-KKGEKGDSEDGAPGLPGQPGSP 1464

Query: 204  G 204
            G
Sbjct: 1465 G 1465



 Score = 37.7 bits (86), Expect = 0.011
 Identities = 55/189 (29%), Positives = 68/189 (35%), Gaps = 19/189 (10%)

Query: 33   PGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSP------WPICLPHPQ 86
            PGL+    +   PG+D   G     GA+G    G    + E  +P       P  LP P 
Sbjct: 1838 PGLNGKNGEPGDPGEDGRKGEKGDSGASGRE--GRDGPKGERGAPGILGPQGPPGLPGPV 1895

Query: 87   GPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRP---RLRGTAGGK 143
            GP P    P  P G G +  G R       E   PG    R + G+ P   RL  TAG K
Sbjct: 1896 GP-PGQGFPGVPGGTGPK--GDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIK 1952

Query: 144  AQGPGN-----PEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPG 198
            A           E   S LP         G + ++     EG    P     +G R  PG
Sbjct: 1953 ASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPG 2012

Query: 199  NLASPGLRL 207
                PGL L
Sbjct: 2013 PQGPPGLAL 2021



 Score = 33.9 bits (76), Expect = 0.15
 Identities = 37/127 (29%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 86   QGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG--GK 143
            +GPR P   P  P   G+R +       GPQ  P        +     P L G +G  GK
Sbjct: 1727 EGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGK 1786

Query: 144  --AQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLR---LAPRRSRDEGRRASPG 198
              A GP  P G              +G   D  R    GLR     P  S   G    PG
Sbjct: 1787 PGAAGPSGPNG-------------AAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPG 1833

Query: 199  NLASPGL 205
                PGL
Sbjct: 1834 EDGKPGL 1840



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 54/207 (26%), Positives = 71/207 (34%), Gaps = 47/207 (22%)

Query: 28   VTVEVPGLSFGGPQ--LSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHP 85
            V+V+ PG    G Q      G   E G++   G  G+R  G+  I+ +   P        
Sbjct: 2094 VSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDR--GVPGIKGDRGEP-------- 2143

Query: 86   QGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG---- 141
             GPR    +P  P   G      +    GP+ PP P            P L G AG    
Sbjct: 2144 -GPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGP 2202

Query: 142  -------GKAQGPGN-------------PEGPSSLLPRLLPLLLLSGATRDRRRLWGEGL 181
                   G+   PG              P GPS L+          G+     ++   G 
Sbjct: 2203 SGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGP-------QGSPGLPGQVGETGK 2255

Query: 182  RLAPRR---SRDEGRRASPGNLASPGL 205
              AP R   S  +G R SPG   SPGL
Sbjct: 2256 PGAPGRDGASGKDGDRGSPGVPGSPGL 2282



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 42/137 (30%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 77   PWPICLPHPQGPRPPSSSPRWPWGL-GDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR 135
            P P+  P  Q   P     R   G  GD  L  R    GPQ   PPGS  ++ + G  P 
Sbjct: 1246 PCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQ--GPPGSATAKGERG-FPG 1302

Query: 136  LRGTAG--GKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGE----GLRLAPRRSR 189
              G  G  G+A  PG P  P       LP        R  R   GE    G  +      
Sbjct: 1303 ADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPG 1362

Query: 190  DEGRRASPGNLASPGLR 206
              GR+  PG    PG R
Sbjct: 1363 LPGRKGDPGPSGPPGPR 1379



 Score = 31.6 bits (70), Expect = 0.76
 Identities = 48/183 (26%), Positives = 61/183 (33%), Gaps = 36/183 (19%)

Query: 41   QLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWG 100
            Q  +PG+    G   A G  G+R             P P+     +G R P      P  
Sbjct: 1460 QPGSPGEQGPRGPPGAIGPKGDRGF-----------PGPLGEAGEKGERGP------PGP 1502

Query: 101  LGDRLLGARASR---SGPQEPPPPGSTVSRRKAGNR--------PRLRGTAGGKAQ-GPG 148
             G R L   A R    GP+ PP P      +    R        P + G  G K   GP 
Sbjct: 1503 AGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPA 1562

Query: 149  NPEGPSSLL-PRLLPLLLL------SGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
             P G + +   R  P L+L       G   DR  +   G    P  S   G +  PG   
Sbjct: 1563 GPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPG 1622

Query: 202  SPG 204
             PG
Sbjct: 1623 PPG 1625



 Score = 31.6 bits (70), Expect = 0.76
 Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 29/101 (28%)

Query: 107  GARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQ-GPGNPEGPSSLLPRLLPLLL 165
            G +  R  P  P PPG  V     G   R +G  G + Q GP  P+G             
Sbjct: 1691 GPKGDRGEPGPPGPPGRLVD---TGPGAREKGEPGDRGQEGPRGPKGDP----------- 1736

Query: 166  LSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
                          GL  AP     EG R  PG    PG+R
Sbjct: 1737 --------------GLPGAPGERGIEGFRGPPGPQGDPGVR 1763



 Score = 29.6 bits (65), Expect = 2.9
 Identities = 49/187 (26%), Positives = 62/187 (33%), Gaps = 48/187 (25%)

Query: 45   PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPR--------------- 89
            PG+D + GA    G  G+  VG+        SP P   P P G +               
Sbjct: 2353 PGEDGQKGAPGPKGFKGDPGVGVP------GSPGP---PGPPGVKGDLGLPGLPGAPGVV 2403

Query: 90   --PPSSSPRWPWG----LGDRLLGARASRS---GPQEPP-PPGSTVSRRKAGNRPRLRGT 139
              P  + PR   G     G+R L     R    GP  PP PPGS      +G    L+G 
Sbjct: 2404 GFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASG----LKGD 2459

Query: 140  AGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGN 199
             G    G   P G               G   +  R   EG R         G R   G+
Sbjct: 2460 KGDPGVGLPGPRGERG----------EPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGD 2509

Query: 200  LASPGLR 206
            + S GL+
Sbjct: 2510 VGSAGLK 2516


>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
           sapiens]
          Length = 729

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 30/190 (15%)

Query: 47  QDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLL 106
           ++ E  A T G A   +Q    + +   WS  P   P        +++P WP G+  R  
Sbjct: 473 EEAEVAAPTKGPAPAPQQCSEPETK---WSSIPASKPRRGTAPTRTAAPPWPGGVSVRTG 529

Query: 107 GARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLL- 165
             + S + P     PG              +G     ++   +PEGP  +  ++L  ++ 
Sbjct: 530 PEKRSSTRPPAEMEPG--------------KGEQASSSES--DPEGP--IAAQMLSFVMD 571

Query: 166 ----LSGATRDRRRLWGEGLRLAPRRSRDEGRRAS----PGNLASPGLRLRCRLDLPGLG 217
                S  +  +RR     +R  P    DE    +    P  L  P  RL+   DL GLG
Sbjct: 572 DPDFESEGSDTQRRADDFPVRDDPSDVTDEDEGPAEPPPPPKLPLPAFRLKNDSDLFGLG 631

Query: 218 LRDLGARSSS 227
           L + G + SS
Sbjct: 632 LEEAGPKESS 641


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 51/176 (28%), Positives = 65/176 (36%), Gaps = 27/176 (15%)

Query: 45   PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
            PG    +G D   G  GER  G Q  +       P+  P P+GP  P      P   G R
Sbjct: 912  PGPKGTSGGDGPPGPPGER--GPQGPQG------PVGFPGPKGPPGPPGKDGLPGHPGQR 963

Query: 105  LLGARASRSGPQEP----PPPGSTVSRRKAGNR--------PRLRGTAG--GKAQGPGNP 150
                   ++GP  P     P G T      G R        P  +G  G  GK    G+P
Sbjct: 964  GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1023

Query: 151  EGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
             GP  +  +  P   L G   +R     +G   AP     EG +  PG + SPG R
Sbjct: 1024 -GPQGISGKDGP-AGLRGFPGERGLPGAQG---APGLKGGEGPQGPPGPVGSPGER 1074



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 41  QLSTPGQDREAGADTAGGAAGERQVGLQKIE-AEWWSPWPICLPHPQGPRPPSSSPRWPW 99
           Q+   G+D   G     G  G+     Q  E  +   P     P  QGP+  +  P +P 
Sbjct: 815 QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG 874

Query: 100 GLGDRLLGARASRSGPQ-EPPPPGSTVSRRKAG--NRPRLRGTAGGKA-------QGPGN 149
             G++     A + GP+ +  P G   SR   G   +P  +GT+GG         +GP  
Sbjct: 875 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQG 934

Query: 150 PEGP 153
           P+GP
Sbjct: 935 PQGP 938



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 51/181 (28%), Positives = 66/181 (36%), Gaps = 34/181 (18%)

Query: 45   PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSP--RWPWGL- 101
            PG+   AG D  GG  GE        + +   P P   P P G   P   P  R P G  
Sbjct: 1332 PGEPGPAGQDGVGGDKGE--------DGDPGQPGP---PGPSGEAGPPGPPGKRGPPGAA 1380

Query: 102  -GDRLLGARASRSGPQEPPPPGST--VSRRKAGNRP---RLRGTAG--------GKA--Q 145
              +   G + ++       PPG T  V  +    +P    LRG  G        G A   
Sbjct: 1381 GAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQD 1440

Query: 146  GPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGL 205
            GP  P GP    P L  L    G+  ++      GL   P    ++G R  PG   SPG 
Sbjct: 1441 GPPGPMGP----PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1496

Query: 206  R 206
            +
Sbjct: 1497 K 1497



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 51/185 (27%), Positives = 68/185 (36%), Gaps = 36/185 (19%)

Query: 33   PGLSFG-GPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
            PGL  G GPQ   PG     G   + G AG   +GL               P PQGP  P
Sbjct: 1053 PGLKGGEGPQ-GPPGPVGSPGERGSAGTAGP--IGLPG------------RPGPQGPPGP 1097

Query: 92   SSSPRWPWGLGDRLLGARASRSGPQE-PPPPGSTVSRRKAGNR-----PRLRGTAGGKAQ 145
            +     P   G +    R    GP   P P G   S  + G++     P  +G+ G K  
Sbjct: 1098 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDK-- 1155

Query: 146  GPGNPEGPSSLLPRLLPLLLLSG----ATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
            G   P GP  L   +    +  G      R ++ ++G+          DEG R  PG   
Sbjct: 1156 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ--------KGDEGARGFPGPPG 1207

Query: 202  SPGLR 206
              GL+
Sbjct: 1208 PIGLQ 1212



 Score = 32.3 bits (72), Expect = 0.45
 Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 20/111 (18%)

Query: 45  PGQDREAGADTAGGAAGER-QVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGD 103
           PGQ   AG D   G  G     G      +  +P P  LP PQGP  P            
Sbjct: 675 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP------------ 722

Query: 104 RLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK-AQGPGNPEGP 153
                     GPQ  P              P   G +G K A GP  P+GP
Sbjct: 723 ------PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGP 767


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 51/176 (28%), Positives = 65/176 (36%), Gaps = 27/176 (15%)

Query: 45   PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
            PG    +G D   G  GER  G Q  +       P+  P P+GP  P      P   G R
Sbjct: 861  PGPKGTSGGDGPPGPPGER--GPQGPQG------PVGFPGPKGPPGPPGKDGLPGHPGQR 912

Query: 105  LLGARASRSGPQEP----PPPGSTVSRRKAGNR--------PRLRGTAG--GKAQGPGNP 150
                   ++GP  P     P G T      G R        P  +G  G  GK    G+P
Sbjct: 913  GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 972

Query: 151  EGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
             GP  +  +  P   L G   +R     +G   AP     EG +  PG + SPG R
Sbjct: 973  -GPQGISGKDGP-AGLRGFPGERGLPGAQG---APGLKGGEGPQGPPGPVGSPGER 1023



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 41  QLSTPGQDREAGADTAGGAAGERQVGLQKIE-AEWWSPWPICLPHPQGPRPPSSSPRWPW 99
           Q+   G+D   G     G  G+     Q  E  +   P     P  QGP+  +  P +P 
Sbjct: 764 QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG 823

Query: 100 GLGDRLLGARASRSGPQ-EPPPPGSTVSRRKAG--NRPRLRGTAGGKA-------QGPGN 149
             G++     A + GP+ +  P G   SR   G   +P  +GT+GG         +GP  
Sbjct: 824 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQG 883

Query: 150 PEGP 153
           P+GP
Sbjct: 884 PQGP 887



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 51/181 (28%), Positives = 66/181 (36%), Gaps = 34/181 (18%)

Query: 45   PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSP--RWPWGL- 101
            PG+   AG D  GG  GE        + +   P P   P P G   P   P  R P G  
Sbjct: 1281 PGEPGPAGQDGVGGDKGE--------DGDPGQPGP---PGPSGEAGPPGPPGKRGPPGAA 1329

Query: 102  -GDRLLGARASRSGPQEPPPPGST--VSRRKAGNRP---RLRGTAG--------GKA--Q 145
              +   G + ++       PPG T  V  +    +P    LRG  G        G A   
Sbjct: 1330 GAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQD 1389

Query: 146  GPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGL 205
            GP  P GP    P L  L    G+  ++      GL   P    ++G R  PG   SPG 
Sbjct: 1390 GPPGPMGP----PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1445

Query: 206  R 206
            +
Sbjct: 1446 K 1446



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 51/185 (27%), Positives = 68/185 (36%), Gaps = 36/185 (19%)

Query: 33   PGLSFG-GPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
            PGL  G GPQ   PG     G   + G AG   +GL               P PQGP  P
Sbjct: 1002 PGLKGGEGPQ-GPPGPVGSPGERGSAGTAGP--IGLPG------------RPGPQGPPGP 1046

Query: 92   SSSPRWPWGLGDRLLGARASRSGPQE-PPPPGSTVSRRKAGNR-----PRLRGTAGGKAQ 145
            +     P   G +    R    GP   P P G   S  + G++     P  +G+ G K  
Sbjct: 1047 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDK-- 1104

Query: 146  GPGNPEGPSSLLPRLLPLLLLSG----ATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
            G   P GP  L   +    +  G      R ++ ++G+          DEG R  PG   
Sbjct: 1105 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ--------KGDEGARGFPGPPG 1156

Query: 202  SPGLR 206
              GL+
Sbjct: 1157 PIGLQ 1161



 Score = 32.3 bits (72), Expect = 0.45
 Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 20/111 (18%)

Query: 45  PGQDREAGADTAGGAAGER-QVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGD 103
           PGQ   AG D   G  G     G      +  +P P  LP PQGP  P            
Sbjct: 624 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP------------ 671

Query: 104 RLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK-AQGPGNPEGP 153
                     GPQ  P              P   G +G K A GP  P+GP
Sbjct: 672 ------PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGP 716


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 51/176 (28%), Positives = 65/176 (36%), Gaps = 27/176 (15%)

Query: 45   PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
            PG    +G D   G  GER  G Q  +       P+  P P+GP  P      P   G R
Sbjct: 900  PGPKGTSGGDGPPGPPGER--GPQGPQG------PVGFPGPKGPPGPPGKDGLPGHPGQR 951

Query: 105  LLGARASRSGPQEP----PPPGSTVSRRKAGNR--------PRLRGTAG--GKAQGPGNP 150
                   ++GP  P     P G T      G R        P  +G  G  GK    G+P
Sbjct: 952  GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1011

Query: 151  EGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
             GP  +  +  P   L G   +R     +G   AP     EG +  PG + SPG R
Sbjct: 1012 -GPQGISGKDGP-AGLRGFPGERGLPGAQG---APGLKGGEGPQGPPGPVGSPGER 1062



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 41  QLSTPGQDREAGADTAGGAAGERQVGLQKIE-AEWWSPWPICLPHPQGPRPPSSSPRWPW 99
           Q+   G+D   G     G  G+     Q  E  +   P     P  QGP+  +  P +P 
Sbjct: 803 QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG 862

Query: 100 GLGDRLLGARASRSGPQ-EPPPPGSTVSRRKAG--NRPRLRGTAGGKA-------QGPGN 149
             G++     A + GP+ +  P G   SR   G   +P  +GT+GG         +GP  
Sbjct: 863 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQG 922

Query: 150 PEGP 153
           P+GP
Sbjct: 923 PQGP 926



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 51/181 (28%), Positives = 66/181 (36%), Gaps = 34/181 (18%)

Query: 45   PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSP--RWPWGL- 101
            PG+   AG D  GG  GE        + +   P P   P P G   P   P  R P G  
Sbjct: 1320 PGEPGPAGQDGVGGDKGE--------DGDPGQPGP---PGPSGEAGPPGPPGKRGPPGAA 1368

Query: 102  -GDRLLGARASRSGPQEPPPPGST--VSRRKAGNRP---RLRGTAG--------GKA--Q 145
              +   G + ++       PPG T  V  +    +P    LRG  G        G A   
Sbjct: 1369 GAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQD 1428

Query: 146  GPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGL 205
            GP  P GP    P L  L    G+  ++      GL   P    ++G R  PG   SPG 
Sbjct: 1429 GPPGPMGP----PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1484

Query: 206  R 206
            +
Sbjct: 1485 K 1485



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 51/185 (27%), Positives = 68/185 (36%), Gaps = 36/185 (19%)

Query: 33   PGLSFG-GPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
            PGL  G GPQ   PG     G   + G AG   +GL               P PQGP  P
Sbjct: 1041 PGLKGGEGPQ-GPPGPVGSPGERGSAGTAGP--IGLPG------------RPGPQGPPGP 1085

Query: 92   SSSPRWPWGLGDRLLGARASRSGPQE-PPPPGSTVSRRKAGNR-----PRLRGTAGGKAQ 145
            +     P   G +    R    GP   P P G   S  + G++     P  +G+ G K  
Sbjct: 1086 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDK-- 1143

Query: 146  GPGNPEGPSSLLPRLLPLLLLSG----ATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
            G   P GP  L   +    +  G      R ++ ++G+          DEG R  PG   
Sbjct: 1144 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ--------KGDEGARGFPGPPG 1195

Query: 202  SPGLR 206
              GL+
Sbjct: 1196 PIGLQ 1200



 Score = 32.3 bits (72), Expect = 0.45
 Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 20/111 (18%)

Query: 45  PGQDREAGADTAGGAAGER-QVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGD 103
           PGQ   AG D   G  G     G      +  +P P  LP PQGP  P            
Sbjct: 663 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP------------ 710

Query: 104 RLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK-AQGPGNPEGP 153
                     GPQ  P              P   G +G K A GP  P+GP
Sbjct: 711 ------PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGP 755


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 37/128 (28%), Positives = 46/128 (35%), Gaps = 35/128 (27%)

Query: 36  SFGGPQLSTPGQD-REAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSS 94
           S  GP  +T G   R  G + AGG       G                    G RP   S
Sbjct: 347 SKAGPSGATAGASGRATGPEAAGGGGAGGGGG--------------------GYRPIIQS 386

Query: 95  PRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRR----------KAGNRPRLRGTAGGKA 144
           P +  G G    G  A+  G   PPPP ST + +           A  +    G AGG+A
Sbjct: 387 PGYKTGKG----GYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQA 442

Query: 145 QGPGNPEG 152
             PG P+G
Sbjct: 443 YSPGQPQG 450



 Score = 34.3 bits (77), Expect = 0.12
 Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 13/117 (11%)

Query: 118  PPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLW 177
            PP PG    RR+ G +P        K  GP  P G     PR+ PL + + A        
Sbjct: 1144 PPNPGPDGPRRR-GRKP-----TKAKRDGPPRPRG----RPRIRPLEVPTTAGPASASTP 1193

Query: 178  GEGLRLAPRRSRDEGRRA--SPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSS 232
             +G +    R R  GR+A  + G    P   L+ +L +P  G   LG  S   +S +
Sbjct: 1194 TDGAKKPRGRGRGRGRKAEEAGGTRLEPLKPLKIKLSVPKAG-EGLGTSSGDAISGT 1249


>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
           sapiens]
          Length = 756

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 45/147 (30%), Positives = 50/147 (34%), Gaps = 25/147 (17%)

Query: 34  GLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSS 93
           G   GGP   +PG D  A    A G A         +E     P P   P   GPR   +
Sbjct: 42  GAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLA 101

Query: 94  SPRWPWGLGDRLLG------------ARASRSGPQEPPP------PGSTVSRRKAGN--- 132
           SP  P G G R                     GP   P        GS+ S R  G    
Sbjct: 102 SPDAP-GPGPRSEAPLPELDPLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDV 160

Query: 133 -RPRLRGTAGGKA--QGPGNPEGPSSL 156
             P    TAG  A  QGPG+P  PS L
Sbjct: 161 FSPFPAPTAGELALEQGPGSPPQPSDL 187



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 41/133 (30%), Positives = 47/133 (35%), Gaps = 24/133 (18%)

Query: 40  PQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSP---- 95
           P  S PG +        GG  G     L    AE     P+  P PQ P     +P    
Sbjct: 5   PPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAA 64

Query: 96  ----RWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPG-NP 150
               RW  G    L G      GP  PPP        ++G R +L   A   A GPG   
Sbjct: 65  DGGARWSAGPAPGLEGGPRD-PGPSAPPP--------RSGPRGQL---ASPDAPGPGPRS 112

Query: 151 EGPSSLLPRLLPL 163
           E P   LP L PL
Sbjct: 113 EAP---LPELDPL 122


>gi|39812378 RAN binding protein 9 [Homo sapiens]
          Length = 729

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 44/141 (31%), Positives = 51/141 (36%), Gaps = 24/141 (17%)

Query: 17  PDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWS 76
           P   L     +V    P +S G     +PG          GGA GE   GL    A    
Sbjct: 23  PPAALAPVSGVVLPAPPAVSAGSSPAGSPG----------GGAGGE---GLGAAAAA--- 66

Query: 77  PWPICLPHPQGPRPPSSS-PRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR 135
                L HP  P PP+++ P  P         A A  SGP  P PPG       AG  P 
Sbjct: 67  ----LLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGP--PAPPGLAAGPGPAGGAPT 120

Query: 136 LRGTAGGKAQGPGNPEGPSSL 156
               AG  A  P  P G S+L
Sbjct: 121 PALVAGSSAAAP-FPHGDSAL 140


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 42/140 (30%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 77  PWPICLPHPQ-GPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPG----STVSRRKAG 131
           P     P PQ GP  P +  R P          R      + PP PG    S  SR +A 
Sbjct: 201 PQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAA 260

Query: 132 NRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWG-EGLRLAPRRSRD 190
            RP      G KA  P  P G     P  L     +  +R R+  WG  G      R  D
Sbjct: 261 GRPGPGFHGGEKAAAPRAPGGGGGRNPGALG--RAAPPSRARQDAWGLSGCATVGLRRGD 318

Query: 191 EGRRASPGNLASPGLRLRCR 210
             R  S    A+ G   RCR
Sbjct: 319 CDRAGSSQPPATSGNGERCR 338



 Score = 35.8 bits (81), Expect = 0.040
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 90  PPSSSPRWPWGL-GDRLLGAR---ASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQ 145
           PPS + +  WGL G   +G R     R+G  +PP       R +   R R RG  GG+ +
Sbjct: 295 PPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRG-GGGEGE 353

Query: 146 GPGNPEGPSSLLPR-----LLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEG 192
           G     GP+S   R     +   +L +G+    RR    GL+L P   R  G
Sbjct: 354 GTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRR----GLQLTPPPRRVHG 401


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 12/179 (6%)

Query: 83   PHPQGPRPPSSSPRWPWGLGDRLLGARASRSG-PQEPPPPGSTVSRRKAGNRPRLRGTAG 141
            P PQ  + PSS  + P G   R    +  + G   +PP    T +R +  ++P  RG+A 
Sbjct: 3754 PGPQQSQSPSSR-QIPSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAP 3812

Query: 142  GKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
              +Q  G P+   S      P    +G  R  +    +G   AP++ R    + +PG   
Sbjct: 3813 AASQPAGKPQPGPSTATGPQP----AGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGP-G 3867

Query: 202  SPGLRLRCRL-DLPGLGLRDLGARSSSVLS----SSPSELVPELSVLLLANSEEGSEIW 255
              G++   R    PG      GA   SV S       +E   +L+  + A  ++ S  W
Sbjct: 3868 PAGVKAGARPGGTPGAPAGQPGADGESVFSKILPGGAAEQAGKLTEAVSAFGKKFSSFW 3926


>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
          Length = 1178

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 79  PICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRG 138
           P+   HP  P P +  P      G +    R     P  PPPP +  SR      P  RG
Sbjct: 7   PLKPTHPAEPPPEAEEPEADARPGAKAPSRRRRDCRPPPPPPPPAGPSRGPLPPPPPPRG 66

Query: 139 ----TAGGKAQG---PGNPEGPSSLL 157
                AGG A G   PG   GPS+ L
Sbjct: 67  LGPPVAGGAAAGAGMPGGGGGPSAAL 92


>gi|94818738 C1q and tumor necrosis factor related protein 2 [Homo
           sapiens]
          Length = 330

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 13/86 (15%)

Query: 76  SPWPIC-LPHPQGPRPPSSSPRWPWGLGDRLL--------GARASRSGPQEPPPPGSTVS 126
           SP  +C LP PQGP  P  +P  P G+  R+         G    R    E  PPG T +
Sbjct: 76  SPQLVCSLPGPQGPPGPPGAPG-PSGMMGRMGFPGKDGQDGHDGDRGDSGEEGPPGRTGN 134

Query: 127 RRKAGNRPRLRGTAGGKAQGPGNPEG 152
           R K G  P+ +  A G+A GP  P+G
Sbjct: 135 RGKPG--PKGKAGAIGRA-GPRGPKG 157


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,904,372
Number of Sequences: 37866
Number of extensions: 976484
Number of successful extensions: 5121
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 590
Number of HSP's that attempted gapping in prelim test: 4298
Number of HSP's gapped (non-prelim): 1243
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press