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Search of human proteins with 239752164
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752164 PREDICTED: hypothetical protein XP_002348157 [Homo
sapiens]
(80 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757674 PREDICTED: hypothetical protein [Homo sapiens] 167 2e-42
gi|239752164 PREDICTED: hypothetical protein XP_002348157 [Homo ... 167 2e-42
gi|239746686 PREDICTED: hypothetical protein XP_002343830 [Homo ... 167 2e-42
gi|151301137 AT-hook transcription factor [Homo sapiens] 38 0.002
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.029
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 33 0.038
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 33 0.064
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ... 33 0.064
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ... 32 0.084
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ... 32 0.084
gi|31542255 hypothetical protein LOC140706 [Homo sapiens] 31 0.19
gi|23308587 N-acetylglutamate synthase [Homo sapiens] 31 0.24
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 30 0.32
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 30 0.32
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 30 0.32
gi|46309849 hypothetical protein LOC57035 [Homo sapiens] 30 0.32
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 30 0.42
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 30 0.42
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 30 0.54
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 30 0.54
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 30 0.54
gi|61743975 SORCS receptor 1 isoform b [Homo sapiens] 30 0.54
gi|61743973 SORCS receptor 1 isoform a [Homo sapiens] 30 0.54
gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens] 30 0.54
gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens] 30 0.54
>gi|239757674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 80
Score = 167 bits (423), Expect = 2e-42
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR 60
MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR
Sbjct: 1 MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR 60
Query: 61 AWPRDNARRAGRGRRGPPGG 80
AWPRDNARRAGRGRRGPPGG
Sbjct: 61 AWPRDNARRAGRGRRGPPGG 80
>gi|239752164 PREDICTED: hypothetical protein XP_002348157 [Homo
sapiens]
Length = 80
Score = 167 bits (423), Expect = 2e-42
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR 60
MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR
Sbjct: 1 MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR 60
Query: 61 AWPRDNARRAGRGRRGPPGG 80
AWPRDNARRAGRGRRGPPGG
Sbjct: 61 AWPRDNARRAGRGRRGPPGG 80
>gi|239746686 PREDICTED: hypothetical protein XP_002343830 [Homo
sapiens]
Length = 80
Score = 167 bits (423), Expect = 2e-42
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR 60
MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR
Sbjct: 1 MDAVVPQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGR 60
Query: 61 AWPRDNARRAGRGRRGPPGG 80
AWPRDNARRAGRGRRGPPGG
Sbjct: 61 AWPRDNARRAGRGRRGPPGG 80
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 16 LHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRR 75
L PPAD L G+ S E+ A A ++T+RR+ S P+ +++AG R
Sbjct: 1261 LGPPPADTLQCPLCGQVGSPPEADGPGSATSGAEKATTRRKASSTPSPKQRSKQAGSSPR 1320
Query: 76 GPPG 79
PPG
Sbjct: 1321 PPPG 1324
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.9 bits (76), Expect = 0.029
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 30 GRGASRTESRFGAG-ARLPAARSTSRR----RRSGRAWPRDNARRAGRGRRGPP 78
GR SRT +R G +R PA R SR RRSGR+ R ARR GR R P
Sbjct: 645 GRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARR-GRSRSRTP 697
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 30 GRGASRTESRFGAGARLPA---ARSTSRRRRSGRAWPRDNARRAGRGRRGPP 78
GR SRT +R + R P +RS S RRSGR+ R ARR GR R P
Sbjct: 613 GRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR-GRSRSRTP 663
Score = 30.4 bits (67), Expect = 0.32
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 31 RGASRTESRFGAGARLPAARSTSR-----RRRS-------GRAWPRDNARRAGRGRRGPP 78
R SRT +R + +R PA R SR RRRS R+ R ARR+GR R P
Sbjct: 593 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 652
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 30 GRGASRTESRFGAGARLPAARSTSRR--RRSGRAWPRDNARRAGRGR 74
GR SRT +R + +R P R + R R GR+ R ARR R R
Sbjct: 582 GRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTR 628
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 30 GRGASRTESRFGAG-ARLPAARSTSRRRRSGRAWPRDNARRAGRGR 74
GR SRT +R G +R PA RS R R+ R +R RGR
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 701
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 38 SRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRR 75
SR A P ++TSRR RS PR R R RR
Sbjct: 1742 SRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRR 1779
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 31 RGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGP 77
RG S SR + AR ++R TS RRR GR+ +R+ R R P
Sbjct: 1815 RGGSGYHSR--SPARQESSR-TSSRRRRGRSRTPPTSRKRSRSRTSP 1858
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 30 GRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGP 77
GR SRT +R G RS SR R GR+ R RR R P
Sbjct: 679 GRSRSRTPARRG--------RSRSRTPRRGRSRSRSLVRRGRSHSRTP 718
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 31 RGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGR 74
RG R+ SR +R R+T RR RSG + R+ R R
Sbjct: 1768 RGLQRSRSR----SRREKTRTTRRRDRSGSSQSTSRRRQRSRSR 1807
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 31 RGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRR 75
RG +R SR + R +RS SR RRS R+ + ++R RGRR
Sbjct: 423 RGRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQSSSRSRSRGRR 467
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 28 GVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRG 76
G R SR SR G G+R +RS SRR R R+ +R GR R G
Sbjct: 424 GRNRDRSRDRSR-GRGSR-SRSRSRSRRSRRSRSQSSSRSRSRGRRRSG 470
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 32.7 bits (73), Expect = 0.064
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 6 PQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRD 65
PQ G GA +H+ + A G GA R GAG R A + +R R RA +
Sbjct: 145 PQAHGRGARGIHAARGRGVE-AAAGAGAQRAAQAVGAGGRSHVAPAGARPARGARA--AE 201
Query: 66 NARRAGRGRRGPPG 79
+ GRG GP G
Sbjct: 202 HPAVGGRG-HGPGG 214
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 32.7 bits (73), Expect = 0.064
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 6 PQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRD 65
PQ G GA +H+ + A G GA R GAG R A + +R R RA +
Sbjct: 294 PQAHGRGARGIHAARGRGVE-AAAGAGAQRAAQAVGAGGRSHVAPAGARPARGARA--AE 350
Query: 66 NARRAGRGRRGPPG 79
+ GRG GP G
Sbjct: 351 HPAVGGRG-HGPGG 363
>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
sapiens]
Length = 446
Score = 32.7 bits (73), Expect = 0.064
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 6 PQDKGIGAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRD 65
PQ G GA +H+ + A G GA R GAG R A + +R R RA +
Sbjct: 294 PQAHGRGARGIHAARGRGVE-AAAGAGAQRAAQAVGAGGRSHVAPAGARPARGARA--AE 350
Query: 66 NARRAGRGRRGPPG 79
+ GRG GP G
Sbjct: 351 HPAVGGRG-HGPGG 363
>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/53 (41%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 28 GVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPGG 80
G GRGA GAG A RR G AW R GRG G PGG
Sbjct: 187 GRGRGA------LGAGGERGRA-GERRRAHGGSAWRSWRTRPGGRGETGRPGG 232
>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
sapiens]
Length = 236
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/53 (41%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 28 GVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPGG 80
G GRGA GAG A RR G AW R GRG G PGG
Sbjct: 187 GRGRGA------LGAGGERGRA-GERRRAHGGSAWRSWRTRPGGRGETGRPGG 232
>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
sapiens]
Length = 236
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/53 (41%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 28 GVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPGG 80
G GRGA GAG A RR G AW R GRG G PGG
Sbjct: 187 GRGRGA------LGAGGERGRA-GERRRAHGGSAWRSWRTRPGGRGETGRPGG 232
>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
Length = 433
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 27 AGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPGG 80
AG G G S R AGAR A+ S RR+ +W R + G G G PGG
Sbjct: 216 AGGGGGGSLERQR--AGAR--ASGSWERRQTFSGSWERRHGGGGGGGGAGKPGG 265
>gi|23308587 N-acetylglutamate synthase [Homo sapiens]
Length = 534
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 30 GRGASRTESRFGAGARLPAARSTSRRRRSGRAW 62
GRG + R GAR AAR TS RR AW
Sbjct: 21 GRGGTGGARRLSCGARRRAARGTSPGRRLSTAW 53
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 14 WNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRG 73
W P D + GVG G E RF R + + RR G A R ARR +
Sbjct: 224 WLGPPPRRDWMREDGVGAGGGPQEPRFPLRRREARSAVVAGPRREGSARSRRAARRRRQL 283
Query: 74 RRGPP 78
+ GPP
Sbjct: 284 QPGPP 288
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 14 WNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRG 73
W P D + GVG G E RF R + + RR G A R ARR +
Sbjct: 216 WLGPPPRRDWMREDGVGAGGGPQEPRFPLRRREARSAVVAGPRREGSARSRRAARRRRQL 275
Query: 74 RRGPP 78
+ GPP
Sbjct: 276 QPGPP 280
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 43 GARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPGG 80
GA PA R + RRRRSG RA G R P G
Sbjct: 13 GASSPAERRSKRRRRSGGDGGGGGGARAPEGVRAPAAG 50
>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
Length = 290
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 31 RGASRTESRFGAGARLPAARSTSRRR--RSGRAWPRDNARRAGRGR 74
R SR SRF + +R +RS SRRR R R + R +R R R
Sbjct: 44 RSHSRVSSRFSSRSRRSKSRSRSRRRHQRKYRRYSRSYSRSRSRSR 89
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 12 GAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAW--PRDNARR 69
GA PP +A GVG G + R G+R +RR R+ R + PR + R
Sbjct: 153 GAATRREPPGNARQSRGVGAGKPEPQRRPPRGSR------AARRPRARRVFTDPRRHTRH 206
Query: 70 AGRGRRGPPG 79
R PPG
Sbjct: 207 RTRRSVAPPG 216
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 19 PPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWP---RDNARRAGRGRR 75
PP ALF R SR S G G+R+P R GR W R R AG G
Sbjct: 8 PPIQALF----DRPGSRPSSAVGEGSRVPGRRLDEGGGVQGR-WKNRGRGTYRGAGPGAG 62
Query: 76 GPPGG 80
P G
Sbjct: 63 SAPPG 67
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 12 GAWNLHSPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAW--PRDNARR 69
GA PP +A GVG G + R G+R +RR R+ R + PR + R
Sbjct: 340 GAATRREPPGNARQSRGVGAGKPEPQRRPPRGSR------AARRPRARRVFTDPRRHTRH 393
Query: 70 AGRGRRGPPG 79
R PPG
Sbjct: 394 RTRRSVAPPG 403
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 27 AGVGRGAS-RTESRFGAGARLPAARSTSRR------RRSGRAWPRDNARRAGRGRR 75
AG RG+ R SR R P+ R+ R RR G + PR R GRGRR
Sbjct: 86 AGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRR 141
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/72 (38%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 19 PPADALFIAGVGRGASRT-----ESRFGAGARLPA----ARSTSRRRRSGR--AWPRDNA 67
PP F G GRGA+R E R R P R RR S R A PR
Sbjct: 1055 PPDHREFSEGDGRGAARGPPGAWEGRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEG 1114
Query: 68 RRAGRGRRGPPG 79
R RGR G PG
Sbjct: 1115 RAPPRGRDGFPG 1126
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 47 PAARSTSRRRRSGRAWPRDNARRAGRGRRGPPGG 80
P + + SR RSG W R + +G RRG G
Sbjct: 1298 PGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRG 1331
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 6 PQDKGIGAWNLHSPPAD--ALFIA--GVGRGASRTESRFGAGARLPAARSTSRRRRSGRA 61
P + +W+ S +D AL+ A V + SRFG G+ LP+ R++ R
Sbjct: 234 PGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPSPRASPRPWTPEDP 293
Query: 62 WPRDNARRAGRG 73
W GRG
Sbjct: 294 WSLYGPSPGGRG 305
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 6 PQDKGIGAWNLHSPPAD--ALFIA--GVGRGASRTESRFGAGARLPAARSTSRRRRSGRA 61
P + +W+ S +D AL+ A V + SRFG G+ LP+ R++ R
Sbjct: 171 PGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPSPRASPRPWTPEDP 230
Query: 62 WPRDNARRAGRG 73
W GRG
Sbjct: 231 WSLYGPSPGGRG 242
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 29.6 bits (65), Expect = 0.54
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 18 SPPADALFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGR 74
SPPA + R S R GAR A R+ RR+ SGR R ARR R R
Sbjct: 291 SPPAPPAPVPSTARARSPGARR---GARELAPRAGRRRQPSGRTSWRRRARREQRDR 344
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 28 GVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPP 78
GVG G E RF R + + RR G A R ARR + + GPP
Sbjct: 5 GVGAGGGPQEPRFPLRRREARSAVVAGPRREGSARSRRAARRRRQLQPGPP 55
>gi|61743975 SORCS receptor 1 isoform b [Homo sapiens]
Length = 1198
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 24 LFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPG 79
LF G A E G GA + A + RRRRSG ++ A R R P G
Sbjct: 77 LFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGA--DQEKAERGEGASRSPRG 130
>gi|61743973 SORCS receptor 1 isoform a [Homo sapiens]
Length = 1168
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 24 LFIAGVGRGASRTESRFGAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPG 79
LF G A E G GA + A + RRRRSG ++ A R R P G
Sbjct: 77 LFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGA--DQEKAERGEGASRSPRG 130
>gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]
Length = 1312
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 41 GAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPG 79
GAG PA ++ R RS AW RRA RG PPG
Sbjct: 663 GAGGSRPA-QAVRARPRSNSAWQIYLQRRAERGTPKPPG 700
>gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]
Length = 1332
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 41 GAGARLPAARSTSRRRRSGRAWPRDNARRAGRGRRGPPG 79
GAG PA ++ R RS AW RRA RG PPG
Sbjct: 683 GAGGSRPA-QAVRARPRSNSAWQIYLQRRAERGTPKPPG 720
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,715,849
Number of Sequences: 37866
Number of extensions: 154985
Number of successful extensions: 1136
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 193
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.