Guide to the Human Genome
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Name: LOC100292805 Sequence: fasta or formatted (80aa) NCBI GI: 239757674
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         13           2
 C cysteine            0.0          0           0
 D aspartate           5.0          4           1
 E glutamate           1.2          1           1
 F phenylalanine       2.5          2           1
 G glycine            16.2         13           2
 H histidine           1.2          1           1
 I isoleucine          2.5          2           1
 K lysine              1.2          1           1
 L leucine             3.8          3           1
 M methionine          1.2          1           1
 N asparagine          2.5          2           1
 P proline             8.8          7           2
 Q glutamine           1.2          1           1
 R arginine           20.0         16           4
 S serine              7.5          6           1
 T threonine           2.5          2           1
 V valine              3.8          3           2
 W tryptophan          2.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290682          1.000   PREDICTED: hypothetical protein XP_002348157 
LOC100287021          1.000   PREDICTED: hypothetical protein XP_002343830 
AKNA                  0.092   AT-hook transcription factor 
SRRM2                 0.063   splicing coactivator subunit SRm300 
ZRSR2                 0.056   U2 small nuclear RNA auxiliary factor 1-like 2 
LOC100292292          0.056   PREDICTED: hypothetical protein 
LOC100291384          0.056   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.056   PREDICTED: hypothetical protein XP_002343004 
LOC100293136          0.049   PREDICTED: hypothetical protein 
LOC100290831          0.049   PREDICTED: hypothetical protein XP_002347799 
LOC100287562          0.049   PREDICTED: hypothetical protein XP_002343591 
C20orf160             0.042   hypothetical protein LOC140706 
NAGS                  0.042   N-acetylglutamate synthase 
LOC651986             0.035   PREDICTED: similar to forkhead box L2 
LOC100288524          0.035   PREDICTED: hypothetical protein XP_002342748 
LMO2                  0.035   LIM domain only 2 isoform 1 
C1orf63               0.035   hypothetical protein LOC57035 
LOC728351             0.035   PREDICTED: hypothetical protein 
LOC728351             0.035   PREDICTED: hypothetical protein 
LOC100287514          0.035   PREDICTED: hypothetical protein XP_002343754 
WDR33                 0.035   WD repeat domain 33 isoform 1 
NFATC4                0.035   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.035   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC100292934          0.035   PREDICTED: hypothetical protein 
LOC651986             0.035   PREDICTED: similar to forkhead box L2 
SORCS1                0.035   SORCS receptor 1 isoform b 
SORCS1                0.035   SORCS receptor 1 isoform a 
MINK1                 0.035   misshapen/NIK-related kinase isoform 4 
MINK1                 0.035   misshapen/NIK-related kinase isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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