Guide to the Human Genome
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Name: LOC729526 Sequence: fasta or formatted (138aa) NCBI GI: 239752135
Description:

PREDICTED: similar to hCG1647452

Not currently referenced in the text

Other entries for this name:
alt mRNA {138aa} PREDICTED: similar to hCG1647452
alt prot {138aa} PREDICTED: similar to hCG1647452
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         11           2
 C cysteine            1.4          2           1
 D aspartate           2.9          4           1
 E glutamate           3.6          5           1
 F phenylalanine       0.7          1           1
 G glycine             9.4         13           2
 H histidine           3.6          5           2
 I isoleucine          0.0          0           0
 K lysine              5.8          8           1
 L leucine             6.5          9           2
 M methionine          2.9          4           1
 N asparagine          1.4          2           1
 P proline             6.5          9           1
 Q glutamine           8.0         11           2
 R arginine            9.4         13           2
 S serine             14.5         20           2
 T threonine           4.3          6           2
 V valine              6.5          9           1
 W tryptophan          1.4          2           1
 Y tyrosine            2.9          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1647452 
LOC729526             1.000   PREDICTED: similar to hCG1647452 
LOC729526             0.984   PREDICTED: similar to hCG1647452 
FAM128B               0.436   hypothetical protein LOC80097 
FAM128A               0.424   hypothetical protein LOC653784 
EFS                   0.051   embryonal Fyn-associated substrate isoform 2 
EFS                   0.051   embryonal Fyn-associated substrate isoform 1 
SFRS2B                0.031   splicing factor, arginine/serine-rich 2B 
LOC100294049          0.027   PREDICTED: similar to hCG2019710 
LOC100291000          0.027   PREDICTED: hypothetical protein XP_002348043 
SPEN                  0.023   spen homolog, transcriptional regulator 
ASAP1                 0.019   development and differentiation enhancing factor 1 [...
SAMD11                0.019   sterile alpha motif domain containing 11 
LOC100292370          0.016   PREDICTED: hypothetical protein 
SPATS2                0.016   spermatogenesis associated, serine-rich 2 
RP1L1                 0.016   retinitis pigmentosa 1-like 1 
TPRX1                 0.016   tetra-peptide repeat homeobox 
FBLIM1                0.012   filamin-binding LIM protein-1 isoform c 
FBLIM1                0.012   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.012   filamin-binding LIM protein-1 isoform a 
GLB1L3                0.012   galactosidase, beta 1 like 3 
MAP7D1                0.012   MAP7 domain containing 1 
ATXN1                 0.012   ataxin 1 
ATXN1                 0.012   ataxin 1 
LOC100133915          0.012   PREDICTED: hypothetical protein 
ZNF469                0.012   zinc finger protein 469 
LOC389333             0.008   hypothetical protein LOC389333 
LTBP2                 0.008   latent transforming growth factor beta binding protei...
LOC100292143          0.008   PREDICTED: hypothetical protein 
LOC100292943          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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