Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292943 Sequence: fasta or formatted (128aa) NCBI GI: 239753708
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         13           2
 C cysteine            3.1          4           1
 D aspartate           0.0          0           0
 E glutamate           2.3          3           2
 F phenylalanine       1.6          2           1
 G glycine            10.9         14           1
 H histidine           2.3          3           1
 I isoleucine          1.6          2           1
 K lysine              2.3          3           1
 L leucine            11.7         15           2
 M methionine          1.6          2           1
 N asparagine          1.6          2           1
 P proline            10.2         13           2
 Q glutamine           3.1          4           1
 R arginine           16.4         21           2
 S serine              6.2          8           2
 T threonine           7.8         10           3
 V valine              3.1          4           1
 W tryptophan          3.1          4           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291546          1.000   PREDICTED: hypothetical protein XP_002346625 
LOC100289522          1.000   PREDICTED: hypothetical protein XP_002342419 
C17orf96              0.033   hypothetical protein LOC100170841 
TLX3                  0.028   T-cell leukemia homeobox 3 
LOC100291462          0.024   PREDICTED: hypothetical protein XP_002347442 
PHACTR3               0.020   phosphatase and actin regulator 3 isoform 3 
PHACTR3               0.020   phosphatase and actin regulator 3 isoform 2 
PHACTR3               0.020   phosphatase and actin regulator 3 isoform 1 
SH3KBP1               0.012   SH3-domain kinase binding protein 1 isoform b 
SH3KBP1               0.012   SH3-domain kinase binding protein 1 isoform a 
C19orf43              0.012   hypothetical protein MGC2803 
LOC100290780          0.012   PREDICTED: hypothetical protein XP_002348295 
ESAM                  0.012   endothelial cell adhesion molecule 
CYTSB                 0.012   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.012   spectrin domain with coiled-coils 1 NSP5a3a 
MAST3                 0.012   microtubule associated serine/threonine kinase 3 [H...
FOXO4                 0.012   forkhead box O4 
ARL10                 0.012   ADP-ribosylation factor-like 10 
SRRM2                 0.012   splicing coactivator subunit SRm300 
CNOT3                 0.012   CCR4-NOT transcription complex, subunit 3 
C1orf167              0.008   PREDICTED: chromosome 1 open reading frame 167 [Hom...
LOC729526             0.008   PREDICTED: similar to hCG1647452 
C1orf167              0.008   PREDICTED: chromosome 1 open reading frame 167 [Hom...
LOC729526             0.008   PREDICTED: similar to hCG1647452 
C1orf167              0.008   PREDICTED: hypothetical protein LOC284498 
MED12                 0.008   mediator complex subunit 12 
WHSC1L1               0.008   WHSC1L1 protein isoform long 
WHSC1L1               0.008   WHSC1L1 protein isoform short 
KIAA1543              0.008   NEZHA isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press