Guide to the Human Genome
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Name: LOC100294049 Sequence: fasta or formatted (651aa) NCBI GI: 239757417
Description:

PREDICTED: similar to hCG2019710

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         42           2
 C cysteine            2.3         15           1
 D aspartate           3.5         23           3
 E glutamate           5.2         34           3
 F phenylalanine       3.2         21           2
 G glycine             6.6         43           2
 H histidine           3.1         20           1
 I isoleucine          3.2         21           1
 K lysine              4.9         32           2
 L leucine             9.4         61           3
 M methionine          1.7         11           2
 N asparagine          3.5         23           2
 P proline             6.5         42           2
 Q glutamine           5.4         35           1
 R arginine            5.1         33           2
 S serine              8.0         52           2
 T threonine           9.8         64           2
 V valine              7.8         51           2
 W tryptophan          1.7         11           1
 Y tyrosine            2.6         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2019710 
LOC100291000          1.000   PREDICTED: hypothetical protein XP_002348043 
LOC100289473          0.782   PREDICTED: hypothetical protein XP_002344218 
SIRPB1                0.112   signal-regulatory protein beta 1 isoform 2 precurso...
SIRPB1                0.107   signal-regulatory protein beta 1 isoform 3 precurso...
SIRPG                 0.107   signal-regulatory protein gamma isoform 2 precursor ...
SIRPA                 0.103   signal-regulatory protein alpha precursor 
SIRPA                 0.103   signal-regulatory protein alpha precursor 
SIRPA                 0.103   signal-regulatory protein alpha precursor 
SIRPG                 0.101   signal-regulatory protein gamma isoform 3 precursor ...
SIRPG                 0.101   signal-regulatory protein gamma isoform 1 precursor ...
LOC654056             0.100   PREDICTED: similar to signal-regulatory protein bet...
SIRPB1                0.099   signal-regulatory protein beta 1 isoform 1 precurso...
LOC654056             0.099   PREDICTED: similar to signal-regulatory protein bet...
SIRPB2                0.076   signal-regulatory protein beta 2 isoform 1 
SIRPD                 0.053   signal-regulatory protein delta 
SIRPB2                0.042   signal-regulatory protein beta 2 isoform 2 
LOC100291786          0.017   PREDICTED: similar to hCG2043206 
LOC440871             0.017   PREDICTED: similar to hCG2043206 
LOC100291682          0.016   PREDICTED: similar to hCG1686089 
LOC100290992          0.016   PREDICTED: hypothetical protein XP_002347049 
LOC100130100          0.015   PREDICTED: similar to hCG26659 
LOC100291464          0.015   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.015   PREDICTED: similar to hCG26659 
LOC439957             0.015   PREDICTED: similar to hCG1742442 
LOC439957             0.015   PREDICTED: similar to hCG1742442 
LOC642424             0.015   PREDICTED: similar to hCG1742442 
LOC642424             0.015   PREDICTED: similar to hCG1742442 
LOC642424             0.015   PREDICTED: similar to hCG1742442 
NEO1                  0.013   neogenin homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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