Guide to the Human Genome
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Name: FAM128B Sequence: fasta or formatted (158aa) NCBI GI: 46094070
Description:

hypothetical protein LOC80097

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6         23           2
 C cysteine            0.6          1           1
 D aspartate           2.5          4           1
 E glutamate           5.7          9           2
 F phenylalanine       1.3          2           1
 G glycine            11.4         18           3
 H histidine           0.0          0           0
 I isoleucine          1.3          2           1
 K lysine              5.7          9           2
 L leucine            11.4         18           2
 M methionine          3.2          5           1
 N asparagine          1.3          2           1
 P proline             9.5         15           2
 Q glutamine           5.1          8           1
 R arginine            7.6         12           2
 S serine              9.5         15           2
 T threonine           3.8          6           1
 V valine              5.1          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC80097 
FAM128A               0.965   hypothetical protein LOC653784 
LOC729526             0.397   PREDICTED: similar to hCG1647452 
LOC729526             0.397   PREDICTED: similar to hCG1647452 
LOC729526             0.397   PREDICTED: similar to hCG1647452 
NHSL1                 0.043   NHS-like 1 
NAB2                  0.039   NGFI-A binding protein 2 
TNK2                  0.035   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.035   tyrosine kinase, non-receptor, 2 isoform 2 
EFS                   0.032   embryonal Fyn-associated substrate isoform 2 
EFS                   0.032   embryonal Fyn-associated substrate isoform 1 
CRTC1                 0.025   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.025   mucoepidermoid carcinoma translocated 1 isoform 1 [...
PER3                  0.025   period 3 
XYLT1                 0.025   xylosyltransferase I 
ATXN7                 0.025   ataxin 7 isoform b 
ATXN7                 0.025   ataxin 7 isoform a 
LOC100289737          0.021   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.021   PREDICTED: hypothetical protein XP_002343039 
SYN1                  0.021   synapsin I isoform Ia 
SYN1                  0.021   synapsin I isoform Ib 
DNAH1                 0.021   dynein, axonemal, heavy chain 1 
CTDP1                 0.021   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.021   CTD (carboxy-terminal domain, RNA polymerase II, pol...
LOC731109             0.021   PREDICTED: hypothetical protein 
BRSK1                 0.021   BR serine/threonine kinase 1 
RP1L1                 0.021   retinitis pigmentosa 1-like 1 
NAV3                  0.021   neuron navigator 3 
RFX5                  0.018   regulatory factor X, 5 
RFX5                  0.018   regulatory factor X, 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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