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Search of human proteins with 239752044
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752044 PREDICTED: hypothetical protein XP_002348074 [Homo
sapiens]
(352 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757528 PREDICTED: hypothetical protein [Homo sapiens] 724 0.0
gi|239752044 PREDICTED: hypothetical protein XP_002348074 [Homo ... 724 0.0
gi|239746528 PREDICTED: hypothetical protein XP_002343752 [Homo ... 724 0.0
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 35 0.10
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 35 0.10
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 33 0.29
gi|239747357 PREDICTED: hypothetical protein XP_002346431 [Homo ... 33 0.38
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ... 33 0.50
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 32 0.66
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 32 0.66
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 32 1.1
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 32 1.1
gi|57864582 hornerin [Homo sapiens] 31 1.5
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 31 1.5
gi|9966841 cell death regulator aven [Homo sapiens] 31 1.9
gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens] 31 1.9
gi|33286446 opioid growth factor receptor [Homo sapiens] 30 3.3
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens] 30 3.3
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ... 30 3.3
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ... 30 3.3
gi|209977067 OTU domain containing 5 isoform c [Homo sapiens] 30 3.3
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 30 3.3
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 30 3.3
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 30 3.3
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 30 3.3
gi|226442744 hypothetical protein LOC643965 [Homo sapiens] 30 4.3
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 30 4.3
gi|239744898 PREDICTED: hypothetical protein XP_002343297 [Homo ... 30 4.3
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 30 4.3
>gi|239757528 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 724 bits (1869), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV 60
MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV
Sbjct: 1 MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV 60
Query: 61 TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD 120
TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD
Sbjct: 61 TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD 120
Query: 121 LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR 180
LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR
Sbjct: 121 LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR 180
Query: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG
Sbjct: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
Query: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR 300
VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR
Sbjct: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR 300
Query: 301 GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA 352
GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA
Sbjct: 301 GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA 352
>gi|239752044 PREDICTED: hypothetical protein XP_002348074 [Homo
sapiens]
Length = 352
Score = 724 bits (1869), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV 60
MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV
Sbjct: 1 MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV 60
Query: 61 TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD 120
TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD
Sbjct: 61 TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD 120
Query: 121 LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR 180
LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR
Sbjct: 121 LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR 180
Query: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG
Sbjct: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
Query: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR 300
VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR
Sbjct: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR 300
Query: 301 GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA 352
GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA
Sbjct: 301 GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA 352
>gi|239746528 PREDICTED: hypothetical protein XP_002343752 [Homo
sapiens]
Length = 352
Score = 724 bits (1869), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV 60
MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV
Sbjct: 1 MGSSRLGTRVPECSISTGSLSVAWMSYLRTIWQRTLLLLNSRSSLHGHHGTHHILLWLFV 60
Query: 61 TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD 120
TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD
Sbjct: 61 TGAHEVSSYPEFKHRSPCMEAPWRLFLLKGTPDPLPVFPFPDQQPVAFFAVVAIGLPRFD 120
Query: 121 LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR 180
LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR
Sbjct: 121 LQPLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRR 180
Query: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG
Sbjct: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
Query: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR 300
VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR
Sbjct: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSR 300
Query: 301 GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA 352
GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA
Sbjct: 301 GLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGVGA 352
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 35.0 bits (79), Expect = 0.10
Identities = 44/144 (30%), Positives = 56/144 (38%), Gaps = 20/144 (13%)
Query: 202 RRRSAPCARGAHVGEGLERHWEGGRG---RRESGARKGVYQGVVLFLETPFPENLQQAAQ 258
RR+ APC RGA GGRG R + R +GV E+ + +
Sbjct: 274 RRKPAPCPRGACAAR------LGGRGTGRARRAEFRVAGPRGVAEEAES------GRGWR 321
Query: 259 QWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSRGLPRTAQLLQEGGKRAAL 318
WP+ A GG C R RV RR H++R L +A+ L G +R
Sbjct: 322 SWPSFSAVSGGGESPDPAGCSRGK-AAPEEPPRVARRAHENR-LRTSARGLGPGDRR--- 376
Query: 319 ADGGAHGSGGHRSAGRQEDGVGRG 342
DG G G AG GRG
Sbjct: 377 GDGRFGGGRGAEGAGSGLPRGGRG 400
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 35.0 bits (79), Expect = 0.10
Identities = 44/144 (30%), Positives = 56/144 (38%), Gaps = 20/144 (13%)
Query: 202 RRRSAPCARGAHVGEGLERHWEGGRG---RRESGARKGVYQGVVLFLETPFPENLQQAAQ 258
RR+ APC RGA GGRG R + R +GV E+ + +
Sbjct: 274 RRKPAPCPRGACAAR------LGGRGTGRARRAEFRVAGPRGVAEEAES------GRGWR 321
Query: 259 QWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSRGLPRTAQLLQEGGKRAAL 318
WP+ A GG C R RV RR H++R L +A+ L G +R
Sbjct: 322 SWPSFSAVSGGGESPDPAGCSRGK-AAPEEPPRVARRAHENR-LRTSARGLGPGDRR--- 376
Query: 319 ADGGAHGSGGHRSAGRQEDGVGRG 342
DG G G AG GRG
Sbjct: 377 GDGRFGGGRGAEGAGSGLPRGGRG 400
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 33.5 bits (75), Expect = 0.29
Identities = 47/165 (28%), Positives = 56/165 (33%), Gaps = 23/165 (13%)
Query: 174 SARILRRA--RSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRES 231
S +LRRA R A PPP L R P PR + P + GR +
Sbjct: 139 SGDVLRRAGRRRARPPPVPRLPAPRAPRRPRGPATP-----------DPSPPAGRPHGPA 187
Query: 232 G-ARKGVYQGVVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRG 290
G A G G L P Q+ GG RQ R+ + A L+ L
Sbjct: 188 GRAAPGRRPGCTAQLRAPGRRGRQRLLVHPGGGGRRQWQRLARARRAALLALGALAHL-- 245
Query: 291 RVRRRCHQSRGLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQ 335
RRC + G QLL G DG A H RQ
Sbjct: 246 ---RRCPDTGGGQHLHQLLAPG----LCGDGAAVWPAAHAGRPRQ 283
>gi|239747357 PREDICTED: hypothetical protein XP_002346431 [Homo
sapiens]
Length = 205
Score = 33.1 bits (74), Expect = 0.38
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 291 RVRRRCHQSR---------GLPRTAQLLQEGGKRAALADGGAH-------GSGGHRSAGR 334
R RRRC + R G+P A + +EG RAA G H G GG GR
Sbjct: 9 RRRRRCRRRRRREGEERKTGVPAAAAVRREGEPRAAPGTGRYHEAGTLESGVGGRTGTGR 68
Query: 335 QEDGVGR 341
+E V R
Sbjct: 69 EEGSVFR 75
>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
sapiens]
Length = 245
Score = 32.7 bits (73), Expect = 0.50
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 24/131 (18%)
Query: 223 EGGRGRRESGARKGVYQGVVLFLETPFPENLQQA--AQQWPAGGARQGGRVLSLATSCQR 280
EG R +R G+R+ TP P+ + A++ G R+GG LS + C
Sbjct: 37 EGARRQRRVGSRQ----------RTPGPDGQDASPRAREEDGGRERRGG--LSHSKDCNA 84
Query: 281 A----DWHLSRLRGR--VRRRCH----QSRGLPRTAQLLQEGGKRAALADGGAHGSGGHR 330
A HL R R R + RRC + R PR L + R A G GG
Sbjct: 85 ARNARGKHLRRTRRRRTLGRRCRPPAPRPRPRPRRKLALDQAATRIPAARPRPPGPGGRG 144
Query: 331 SAGRQEDGVGR 341
S + + GV R
Sbjct: 145 SHWKIQPGVQR 155
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 32.3 bits (72), Expect = 0.66
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 163 LHLQPAGHSAVSARILRRARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHW 222
LHLQP G ++V RR P PA P P + P +H+G +
Sbjct: 430 LHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPP---ASHLGSSPAQAP 486
Query: 223 EGGRGRRESGARKG 236
G GRR G G
Sbjct: 487 SGEAGRRAGGGAVG 500
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 32.3 bits (72), Expect = 0.66
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 163 LHLQPAGHSAVSARILRRARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHW 222
LHLQP G ++V RR P PA P P + P +H+G +
Sbjct: 430 LHLQPVGANSVERAARRRRTRPEPGPARRGARAEPPGPPTLQDPP---ASHLGSSPAQAP 486
Query: 223 EGGRGRRESGARKG 236
G GRR G G
Sbjct: 487 SGEAGRRAGGGAVG 500
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 31.6 bits (70), Expect = 1.1
Identities = 48/150 (32%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
ARS P A+ L G RG S P VG G R WE RG RESG +
Sbjct: 315 ARSWHPFVANKLCG-RGKGAGGGASRP---KEGVGSGRARAWE-PRGGRESGRSR----- 364
Query: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQR--ADWHLSRLRGRVRRRCHQ 298
E+LQ A WP +R+ R S SC + A+ H + R ++RR +
Sbjct: 365 ----RRKSLLEDLQTEATLWP---SREVPREPS-RPSCPQGVAETHTTAERAQLRRLAAR 416
Query: 299 SRGLPRTAQLLQEGGKRAALADGGAHGSGG 328
+ PR L E A G HG+ G
Sbjct: 417 APRPPRATSLRAE----TPPAQGLQHGNLG 442
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 31.6 bits (70), Expect = 1.1
Identities = 48/150 (32%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
ARS P A+ L G RG S P VG G R WE RG RESG +
Sbjct: 268 ARSWHPFVANKLCG-RGKGAGGGASRP---KEGVGSGRARAWE-PRGGRESGRSR----- 317
Query: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQR--ADWHLSRLRGRVRRRCHQ 298
E+LQ A WP +R+ R S SC + A+ H + R ++RR +
Sbjct: 318 ----RRKSLLEDLQTEATLWP---SREVPREPS-RPSCPQGVAETHTTAERAQLRRLAAR 369
Query: 299 SRGLPRTAQLLQEGGKRAALADGGAHGSGG 328
+ PR L E A G HG+ G
Sbjct: 370 APRPPRATSLRAE----TPPAQGLQHGNLG 395
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 31.6 bits (70), Expect = 1.1
Identities = 48/150 (32%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 181 ARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQG 240
ARS P A+ L G RG S P VG G R WE RG RESG +
Sbjct: 315 ARSWHPFVANKLCG-RGKGAGGGASRP---KEGVGSGRARAWE-PRGGRESGRSR----- 364
Query: 241 VVLFLETPFPENLQQAAQQWPAGGARQGGRVLSLATSCQR--ADWHLSRLRGRVRRRCHQ 298
E+LQ A WP +R+ R S SC + A+ H + R ++RR +
Sbjct: 365 ----RRKSLLEDLQTEATLWP---SREVPREPS-RPSCPQGVAETHTTAERAQLRRLAAR 416
Query: 299 SRGLPRTAQLLQEGGKRAALADGGAHGSGG 328
+ PR L E A G HG+ G
Sbjct: 417 APRPPRATSLRAE----TPPAQGLQHGNLG 442
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 31.2 bits (69), Expect = 1.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 295 RCHQSRGLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRG 342
R H SR ++++ Q G + G HGSG H+S+G G G G
Sbjct: 727 RKHGSRS-GQSSRSEQHGSSSGLSSSYGQHGSGSHQSSGHGRQGSGSG 773
Score = 29.6 bits (65), Expect = 4.3
Identities = 36/162 (22%), Positives = 52/162 (32%), Gaps = 30/162 (18%)
Query: 196 RGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQGVVLFLETPFPENLQQ 255
+ PS R S ++ G W GR SG+ + G
Sbjct: 1358 QSPSRGRHGSGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGFG-------------HH 1404
Query: 256 AAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSRGLPRTAQLLQEGGKR 315
+ W + G Q G ++S ++ H SR R H S ++ G R
Sbjct: 1405 ESSSWQSSGCTQHGSGSGHSSSYEQ---HGSRSGQSSRGERHGSSSGSSSSYGQHGSGSR 1461
Query: 316 AALADG--------------GAHGSGGHRSAGRQEDGVGRGW 343
+L G G HGSG +S+ G G GW
Sbjct: 1462 QSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGW 1503
Score = 29.3 bits (64), Expect = 5.6
Identities = 33/147 (22%), Positives = 44/147 (29%), Gaps = 30/147 (20%)
Query: 196 RGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQGVVLFLETPFPENLQQ 255
+ PS R S ++ G W GR SG+ + G
Sbjct: 1828 QSPSRGRHGSGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGFG-------------HH 1874
Query: 256 AAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSRGLPRTAQLLQEGGKR 315
+ W + G Q G H S R SRG Q G
Sbjct: 1875 ESSSWQSSGYTQHGS----------GSGHSSSYEQHGSRSGQSSRGE-------QHGSSS 1917
Query: 316 AALADGGAHGSGGHRSAGRQEDGVGRG 342
+ + G HGSG +S G + G G G
Sbjct: 1918 GSSSSYGQHGSGSRQSLGHGQHGSGSG 1944
Score = 28.9 bits (63), Expect = 7.3
Identities = 36/162 (22%), Positives = 52/162 (32%), Gaps = 30/162 (18%)
Query: 196 RGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQGVVLFLETPFPENLQQ 255
+ PS R S ++ G W GR SG+ + G
Sbjct: 2298 QSPSRGRHGSGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGFG-------------HH 2344
Query: 256 AAQQWPAGGARQGGRVLSLATSCQRADWHLSRLRGRVRRRCHQSRGLPRTAQLLQEGGKR 315
+ W + G Q G ++S ++ H SR R H S ++ G R
Sbjct: 2345 ESSSWQSSGYTQHGSGSGHSSSYEQ---HGSRSGQSSRGERHGSSSGSSSSYGQHGSGSR 2401
Query: 316 AALADG--------------GAHGSGGHRSAGRQEDGVGRGW 343
+L G G HGSG +S+ G G GW
Sbjct: 2402 QSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGW 2443
>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
Length = 211
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 293 RRRCHQSRGLPRTAQLLQEGGKRAALADGGAHGSGGHRS------AGRQEDGV---GRGW 343
R+R + RG PR + +R+ L GG G S GRQ +G+ GRGW
Sbjct: 70 RKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHPLGVGGRQREGLGPSGRGW 129
Query: 344 Y 344
+
Sbjct: 130 H 130
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 290 GRVRRRCHQSRGLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGVGRGW 343
GR RR RG P + + G AA+A GG G GG GR+ G GRG+
Sbjct: 10 GRGRR---PGRGRPGGDRHSERPGAAAAVARGGGGGGGGD-GGGRRGRGRGRGF 59
>gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]
Length = 703
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 314 KRAALADGGAHGSGGHRSAGRQEDGVGRGWYEVLVGV 350
+RA L GGA+ SGGH S+G G WY+ L V
Sbjct: 534 ERAELQAGGANSSGGH-SSGGGSSGDEEEWYQGLPAV 569
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 30.0 bits (66), Expect = 3.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 286 SRLRGRVRRRCHQSRGLPRTAQLLQEGGKRAALADGGAHGSGGHRSAGRQEDGV 339
+R+ +VR+R G +A + G + ALA G+ GH AG E+GV
Sbjct: 449 ARVADKVRKRRKVDEGAGDSAAVASGGAQTLALA--GSPAPSGHPKAGHSENGV 500
>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.0 bits (66), Expect = 3.3
Identities = 36/107 (33%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 172 AVSARILRRARSAFPPPASFLLGDRGP-SLPRRRSAPCARGAHVGEGLERHWEGGRGRRE 230
A +AR+ ARS PPA L P S P RS P R + E G GR+
Sbjct: 173 AAAARLGSAARSPGAPPAGRSLAQPHPQSCPLARS-PAYRSTGPNDPASNFTE-GTGRQR 230
Query: 231 SGA---RKGVYQGVVLFLETPFPENLQQAAQQWP--AGGARQGGRVL 272
S A R V + P N + Q WP GG R G R L
Sbjct: 231 SAAAAPRPFVTPPTNRWTALSLPSNQRGRGQAWPPDVGGCR-GARAL 276
>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
sapiens]
Length = 250
Score = 30.0 bits (66), Expect = 3.3
Identities = 36/107 (33%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 172 AVSARILRRARSAFPPPASFLLGDRGP-SLPRRRSAPCARGAHVGEGLERHWEGGRGRRE 230
A +AR+ ARS PPA L P S P RS P R + E G GR+
Sbjct: 126 AAAARLGSAARSPGAPPAGRSLAQPHPQSCPLARS-PAYRSTGPNDPASNFTE-GTGRQR 183
Query: 231 SGA---RKGVYQGVVLFLETPFPENLQQAAQQWP--AGGARQGGRVL 272
S A R V + P N + Q WP GG R G R L
Sbjct: 184 SAAAAPRPFVTPPTNRWTALSLPSNQRGRGQAWPPDVGGCR-GARAL 229
>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
sapiens]
Length = 250
Score = 30.0 bits (66), Expect = 3.3
Identities = 36/107 (33%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 172 AVSARILRRARSAFPPPASFLLGDRGP-SLPRRRSAPCARGAHVGEGLERHWEGGRGRRE 230
A +AR+ ARS PPA L P S P RS P R + E G GR+
Sbjct: 126 AAAARLGSAARSPGAPPAGRSLAQPHPQSCPLARS-PAYRSTGPNDPASNFTE-GTGRQR 183
Query: 231 SGA---RKGVYQGVVLFLETPFPENLQQAAQQWP--AGGARQGGRVL 272
S A R V + P N + Q WP GG R G R L
Sbjct: 184 SAAAAPRPFVTPPTNRWTALSLPSNQRGRGQAWPPDVGGCR-GARAL 229
>gi|209977067 OTU domain containing 5 isoform c [Homo sapiens]
Length = 349
Score = 30.0 bits (66), Expect = 3.3
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 196 RGPSLPRRRSAPCARG-AHVGEGLERHWEGGRGRRESGA-------------RKGVYQGV 241
RGPS PR+ SA C+ A GLE W R+ S A K G
Sbjct: 200 RGPSQPRKASATCSSATAAASSGLE-EWTSRSPRQRSSASSPEHPELHAELGMKPPSPGT 258
Query: 242 VLFLETPFPENLQQAAQQWPAGGARQGGRVLSL 274
VL L P + Q+ AG R ++SL
Sbjct: 259 VLALAKPPSPCAPGTSSQFSAGADRATSPLVSL 291
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 30.0 bits (66), Expect = 3.3
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 196 RGPSLPRRRSAPCARG-AHVGEGLERHWEGGRGRRESGA-------------RKGVYQGV 241
RGPS PR+ SA C+ A GLE W R+ S A K G
Sbjct: 422 RGPSQPRKASATCSSATAAASSGLE-EWTSRSPRQRSSASSPEHPELHAELGMKPPSPGT 480
Query: 242 VLFLETPFPENLQQAAQQWPAGGARQGGRVLSL 274
VL L P + Q+ AG R ++SL
Sbjct: 481 VLALAKPPSPCAPGTSSQFSAGADRATSPLVSL 513
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 30.0 bits (66), Expect = 3.3
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 196 RGPSLPRRRSAPCARG-AHVGEGLERHWEGGRGRRESGA-------------RKGVYQGV 241
RGPS PR+ SA C+ A GLE W R+ S A K G
Sbjct: 417 RGPSQPRKASATCSSATAAASSGLE-EWTSRSPRQRSSASSPEHPELHAELGMKPPSPGT 475
Query: 242 VLFLETPFPENLQQAAQQWPAGGARQGGRVLSL 274
VL L P + Q+ AG R ++SL
Sbjct: 476 VLALAKPPSPCAPGTSSQFSAGADRATSPLVSL 508
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 30.0 bits (66), Expect = 3.3
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 196 RGPSLPRRRSAPCARG-AHVGEGLERHWEGGRGRRESGA-------------RKGVYQGV 241
RGPS PR+ SA C+ A GLE W R+ S A K G
Sbjct: 417 RGPSQPRKASATCSSATAAASSGLE-EWTSRSPRQRSSASSPEHPELHAELGMKPPSPGT 475
Query: 242 VLFLETPFPENLQQAAQQWPAGGARQGGRVLSL 274
VL L P + Q+ AG R ++SL
Sbjct: 476 VLALAKPPSPCAPGTSSQFSAGADRATSPLVSL 508
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 30.0 bits (66), Expect = 3.3
Identities = 56/212 (26%), Positives = 71/212 (33%), Gaps = 63/212 (29%)
Query: 180 RARSAFPPPASFLLGDRGPSLPRRRSAPCARGAHV---GEGLER--------------HW 222
R R FP P F GP S ARG + G G R +
Sbjct: 1119 RGRDGFPGPEDF-----GPEENFDASEEAARGRDLRGRGRGTPRGGRKGLLPTPDEFPRF 1173
Query: 223 EGGR------GRRESGARKGVYQGVVLFLETPFPENLQQAAQQWPAGGAR----QGGRVL 272
EGGR G RE G G F +TP P++ PA R QG +
Sbjct: 1174 EGGRKPDSWDGNREPGP------GHEHFRDTPRPDHPPHDGHS-PASRERSSSLQGMDMA 1226
Query: 273 SLATSCQRADWH----------LSRLRGRVRRRCHQSRGLPRTAQLLQEGGKRAALAD-- 320
SL ++ WH + G R + RG P AQ + + G+ ++L
Sbjct: 1227 SLPP--RKRPWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPAQRVPKSGRSSSLDGEH 1284
Query: 321 ----------GGAHGSGGHRSAGRQEDGVGRG 342
GG GSG GR GRG
Sbjct: 1285 HDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRG 1316
>gi|226442744 hypothetical protein LOC643965 [Homo sapiens]
Length = 163
Score = 29.6 bits (65), Expect = 4.3
Identities = 17/39 (43%), Positives = 18/39 (46%)
Query: 171 SAVSARILRRARSAFPPPASFLLGDRGPSLPRRRSAPCA 209
SAV AR+ RR R PPPA R P P CA
Sbjct: 123 SAVRARLARRLRPLLPPPAGTPGPRRPPGRPDEDEQLCA 161
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 29.6 bits (65), Expect = 4.3
Identities = 35/119 (29%), Positives = 41/119 (34%), Gaps = 14/119 (11%)
Query: 123 PLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRRAR 182
P R Q W + H G LA+ L+ A +A RR R
Sbjct: 195 PAARRGCAQEQLRNAPWAPRAHSPAG------RLALGLIAPRRGAGRAGAGAAACGRRGR 248
Query: 183 SAFP-----PPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKG 236
A P AS+L R +LPR S P A G L R GR R GA G
Sbjct: 249 IAAPLSGVVQKASYL---RPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAG 304
>gi|239744898 PREDICTED: hypothetical protein XP_002343297 [Homo
sapiens]
Length = 210
Score = 29.6 bits (65), Expect = 4.3
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 197 GPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKGVYQGVVL 243
GP +AP ARG V W G R+E AR GV G+ L
Sbjct: 113 GPRFFIALAAPAARGLRVSSQGPGLWRGPAARKEGVARVGVAAGLRL 159
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 29.6 bits (65), Expect = 4.3
Identities = 35/119 (29%), Positives = 41/119 (34%), Gaps = 14/119 (11%)
Query: 123 PLRVRALGAVQRFQQAWRAQVHRLKGTQLHAENLAILLVVLHLQPAGHSAVSARILRRAR 182
P R Q W + H G LA+ L+ A +A RR R
Sbjct: 195 PAARRGCAQEQLRNAPWAPRAHSPAG------RLALGLIAPRRGAGRAGAGAAACGRRGR 248
Query: 183 SAFP-----PPASFLLGDRGPSLPRRRSAPCARGAHVGEGLERHWEGGRGRRESGARKG 236
A P AS+L R +LPR S P A G L R GR R GA G
Sbjct: 249 IAAPLSGVVQKASYL---RPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAG 304
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,445,172
Number of Sequences: 37866
Number of extensions: 804213
Number of successful extensions: 2677
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2585
Number of HSP's gapped (non-prelim): 132
length of query: 352
length of database: 18,247,518
effective HSP length: 103
effective length of query: 249
effective length of database: 14,347,320
effective search space: 3572482680
effective search space used: 3572482680
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.