Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291053 Sequence: fasta or formatted (352aa) NCBI GI: 239752044
Description:

PREDICTED: hypothetical protein XP_002348074

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         35           2
 C cysteine            1.4          5           1
 D aspartate           2.0          7           1
 E glutamate           4.0         14           1
 F phenylalanine       3.7         13           2
 G glycine            11.6         41           2
 H histidine           4.8         17           2
 I isoleucine          1.7          6           1
 K lysine              1.4          5           1
 L leucine            12.2         43           4
 M methionine          0.9          3           1
 N asparagine          0.9          3           1
 P proline             6.5         23           3
 Q glutamine           6.0         21           2
 R arginine           11.9         42           3
 S serine              7.4         26           2
 T threonine           3.1         11           1
 V valine              6.8         24           2
 W tryptophan          2.6          9           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348074 
LOC100292770          1.000   PREDICTED: hypothetical protein 
LOC100287442          1.000   PREDICTED: hypothetical protein XP_002343752 
LOC100291533          0.014   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.014   PREDICTED: hypothetical protein XP_002342946 
LOC283999             0.011   hypothetical protein LOC283999 
LOC100291550          0.011   PREDICTED: hypothetical protein XP_002346431 
LOC100288573          0.011   PREDICTED: hypothetical protein XP_002343799 
LOC100290274          0.010   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.010   PREDICTED: hypothetical protein XP_002342846 
LOC100293604          0.010   PREDICTED: hypothetical protein 
LOC100289721          0.010   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.010   PREDICTED: hypothetical protein XP_002343157 
HRNR                  0.009   hornerin 
CBX2                  0.009   chromobox homolog 2 isoform 2 
AVEN                  0.009   cell death regulator aven 
USHBP1                0.009   Usher syndrome 1C binding protein 1 
OGFR                  0.007   opioid growth factor receptor 
LOC100294010          0.007   PREDICTED: hypothetical protein 
LOC100291514          0.007   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.007   PREDICTED: hypothetical protein XP_002343026 
OTUD5                 0.007   OTU domain containing 5 isoform c 
OTUD5                 0.007   OTU domain containing 5 isoform a 
OTUD5                 0.007   OTU domain containing 5 isoform b 
OTUD5                 0.007   OTU domain containing 5 isoform b 
WDR33                 0.007   WD repeat domain 33 isoform 1 
TMEM88B               0.007   hypothetical protein LOC643965 
LOC100290372          0.007   PREDICTED: hypothetical protein XP_002346788 
LOC100287820          0.007   PREDICTED: hypothetical protein XP_002343297 
LOC100288606          0.007   PREDICTED: hypothetical protein XP_002342652 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press