Guide to the Human Genome
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Name: LOC100287820 Sequence: fasta or formatted (210aa) NCBI GI: 239744898
Description:

PREDICTED: hypothetical protein XP_002343297

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         29           2
 C cysteine            1.4          3           2
 D aspartate           1.0          2           1
 E glutamate           4.3          9           2
 F phenylalanine       1.9          4           2
 G glycine            14.8         31           2
 H histidine           2.4          5           1
 I isoleucine          1.4          3           1
 K lysine              3.8          8           1
 L leucine             7.6         16           3
 M methionine          1.4          3           1
 N asparagine          0.5          1           1
 P proline            13.8         29           2
 Q glutamine           1.4          3           1
 R arginine           17.6         37           3
 S serine              6.7         14           2
 T threonine           1.9          4           2
 V valine              2.4          5           1
 W tryptophan          1.9          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343297 
LOC100291624          0.043   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.043   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.043   PREDICTED: hypothetical protein XP_002342583 
LOC643355             0.041   PREDICTED: hypothetical protein 
LOC645602             0.041   PREDICTED: hypothetical protein 
LOC100292723          0.041   PREDICTED: hypothetical protein 
LOC645602             0.041   PREDICTED: hypothetical protein 
LOC645602             0.041   PREDICTED: hypothetical protein 
LOC100289408          0.041   PREDICTED: hypothetical protein 
LOC100289408          0.041   PREDICTED: hypothetical protein XP_002344217 
LOC100292370          0.036   PREDICTED: hypothetical protein 
SRRM2                 0.036   splicing coactivator subunit SRm300 
LOC100290274          0.036   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.036   PREDICTED: hypothetical protein XP_002342846 
LOC100127891          0.034   PREDICTED: similar to hCG2042508 
LOC100127891          0.034   PREDICTED: similar to hCG2042508 
LOC100127891          0.034   PREDICTED: similar to hCG2042508 
LOC643355             0.034   PREDICTED: hypothetical protein 
LOC388279             0.034   PREDICTED: hypothetical protein 
LOC643355             0.034   PREDICTED: hypothetical protein 
LOC100134152          0.034   PREDICTED: similar to synaptotagmin XV-b 
COL27A1               0.034   collagen, type XXVII, alpha 1 
GPR37                 0.031   G protein-coupled receptor 37 
LOC100291634          0.031   PREDICTED: hypothetical protein XP_002346062 
WDR81                 0.031   PREDICTED: WD repeat domain 81 
LOC100287232          0.031   PREDICTED: hypothetical protein XP_002342816 
LOC100288963          0.031   PREDICTED: hypothetical protein XP_002342546 
LOC100287232          0.031   PREDICTED: hypothetical protein 
LOC100292172          0.029   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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