Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751874
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
(330 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 691 0.0
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 691 0.0
gi|239746363 PREDICTED: hypothetical protein XP_002343737 [Homo ... 369 e-102
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 59 8e-09
gi|110832843 TBP-associated factor 4 [Homo sapiens] 57 2e-08
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 54 3e-07
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 53 3e-07
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 51 1e-06
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 51 1e-06
gi|153792074 proline rich 12 [Homo sapiens] 50 2e-06
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 50 3e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 49 8e-06
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 49 8e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 1e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 1e-05
gi|171543895 ataxin 2 [Homo sapiens] 48 1e-05
gi|109255251 loricrin [Homo sapiens] 48 1e-05
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 48 1e-05
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 48 1e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 48 1e-05
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 47 2e-05
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 47 2e-05
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 47 2e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 47 2e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 47 2e-05
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 47 3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 46 4e-05
gi|54860079 nadrin isoform 1 [Homo sapiens] 46 5e-05
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 46 5e-05
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 691 bits (1784), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG 60
MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG
Sbjct: 1 MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG 60
Query: 61 SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS 120
SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS
Sbjct: 61 SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS 120
Query: 121 GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR 180
GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR
Sbjct: 121 GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR 180
Query: 181 TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR 240
TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR
Sbjct: 181 TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR 240
Query: 241 PGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFFLRAGSHL 300
PGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFFLRAGSHL
Sbjct: 241 PGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFFLRAGSHL 300
Query: 301 VRKVSCGTRREIQEPGIRVRRATSSFALRS 330
VRKVSCGTRREIQEPGIRVRRATSSFALRS
Sbjct: 301 VRKVSCGTRREIQEPGIRVRRATSSFALRS 330
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 691 bits (1784), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG 60
MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG
Sbjct: 1 MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG 60
Query: 61 SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS 120
SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS
Sbjct: 61 SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS 120
Query: 121 GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR 180
GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR
Sbjct: 121 GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR 180
Query: 181 TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR 240
TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR
Sbjct: 181 TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR 240
Query: 241 PGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFFLRAGSHL 300
PGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFFLRAGSHL
Sbjct: 241 PGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFFLRAGSHL 300
Query: 301 VRKVSCGTRREIQEPGIRVRRATSSFALRS 330
VRKVSCGTRREIQEPGIRVRRATSSFALRS
Sbjct: 301 VRKVSCGTRREIQEPGIRVRRATSSFALRS 330
>gi|239746363 PREDICTED: hypothetical protein XP_002343737 [Homo
sapiens]
Length = 179
Score = 369 bits (946), Expect = e-102
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG 60
MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG
Sbjct: 1 MTSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSG 60
Query: 61 SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS 120
SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS
Sbjct: 61 SAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPS 120
Query: 121 GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFP 175
GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFP
Sbjct: 121 GAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFP 175
Score = 29.3 bits (64), Expect = 5.1
Identities = 42/148 (28%), Positives = 50/148 (33%), Gaps = 40/148 (27%)
Query: 118 SPSGAEMDRAPRSG--RFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFP 175
+PS A PRS G AG G G G APA G+ + GG P
Sbjct: 41 TPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGE-RGAPAGGA------RGSGGGPP 93
Query: 176 PGPARTEITTHSRSGPTGSQTRGNCGA---AGSGDPRWGDPRPG---------------- 216
P R E++ P S R C + SG PR G
Sbjct: 94 PWRLRNEVS------PKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGIC 147
Query: 217 EGF------TARFLQPRGCGREFSGPFP 238
EG AR QPR C ++ G FP
Sbjct: 148 EGHGRVSAAPARGSQPRDCSKDDGGRFP 175
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 58.5 bits (140), Expect = 8e-09
Identities = 88/297 (29%), Positives = 104/297 (35%), Gaps = 69/297 (23%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAA--DCGTAGGGGER 78
PG A G R P A GPR ++G+ G A D G G G +
Sbjct: 670 PGPSGARGERGFPGERGVQGPPGPA----GPRG----ANGAPGNDGAKGDAGAPGAPGSQ 721
Query: 79 GAPA----GGARGSGGGPPPWRLRNEVSPKAS-----------------PPRPTCSVCRK 117
GAP G RG+ G P P R + PK + PP P + K
Sbjct: 722 GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDK 781
Query: 118 SPSGAEMDRAPRSGRFL-------GCAGPSCFSTGICEGHGRVSAAPARGSQPRDC-SKD 169
SG P R G GP+ F+ G P +P D +K
Sbjct: 782 GESGPSGPAGPTGARGAPGDRGEPGPPGPAGFA-----GPPGADGQPGAKGEPGDAGAKG 836
Query: 170 DGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPG-EGFTARFLQPRG 228
D G PPGPA +GP G GN GA G+ R PG GF P
Sbjct: 837 DAG--PPGPA-------GPAGPPG--PIGNVGAPGAKGARGSAGPPGATGF------PGA 879
Query: 229 CGREFSGPFPS-RPGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSP 284
GR P PS GP P P P +G R T P A PG + P PP P
Sbjct: 880 AGR-VGPPGPSGNAGP--PGPPGP-AGKEGGKGPRGETGP--AGRPGEVGPPGPPGP 930
Score = 46.2 bits (108), Expect = 4e-05
Identities = 91/326 (27%), Positives = 107/326 (32%), Gaps = 71/326 (21%)
Query: 18 GCVPGRGSASGLAAA----ASGRAASMTPSTASSMEGPRSRWKDSSGSAGEG-------- 65
G RGSA A A+GR PS + GP G G
Sbjct: 860 GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRP 919
Query: 66 --AADCGTAGGGGERGAP-AGGARGSGGGPPPWRLRNEVSPKASP-----------PRPT 111
G G GE+G+P A G G+ G P P + + P P P+
Sbjct: 920 GEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS 979
Query: 112 CSVCRKSPSGAEMDRAPRSGRF-LGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCS--- 167
++ PSGA +R P G AGP S GR A A GS RD S
Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGES-------GREGAPGAEGSPGRDGSPGA 1032
Query: 168 KDDGGRFPPGPARTEITTHSRSGPTG----SQTRGNCGAAGSGDPRW----------GDP 213
K D G P GP G S RG G AG P P
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092
Query: 214 RPGEGFTARFLQPRGC--GREFSGPFPSRPGPRTPVPTAPYLAVLPERGGRALTTPALAR 271
R +G T RG R FSG PGP P +P E+G + PA R
Sbjct: 1093 RGDKGETGE-QGDRGIKGHRGFSG-LQGPPGP----PGSP-----GEQGPSGASGPAGPR 1141
Query: 272 TPGSLAPSPP-------PSPNPRPAP 290
P A +P P P P P
Sbjct: 1142 GPPGSAGAPGKDGLNGLPGPIGPPGP 1167
Score = 42.7 bits (99), Expect = 4e-04
Identities = 89/340 (26%), Positives = 105/340 (30%), Gaps = 80/340 (23%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTAS--SMEGPR--SRWKDSSGSAGEGAADCGTAGGGG 76
PGR G R P TA M+G R S + G AG A G G G
Sbjct: 238 PGRPGERGPPGPQGARGL---PGTAGLPGMKGHRGFSGLDGAKGDAGP-AGPKGEPGSPG 293
Query: 77 ERGAPAG-------GARGSGGGPPPWRLRNE--VSPKASPPRPT------------CSVC 115
E GAP G RG G P P R + A PP PT +
Sbjct: 294 ENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG 353
Query: 116 RKSPSGAEMDRAPRSGRF-------LGCAGPSCFSTGICEGHGRVSAAPARGSQ------ 162
P G P+ R G AGP+ G G+ A A G+
Sbjct: 354 EAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPA----GNPGADGQPGAKGANGAPGIAGAP 409
Query: 163 ----PRDCSKDDGGRFPPGP-----------ARTEITTHSRSGPTGSQ-------TRGNC 200
R S G PPGP ++ + GP G Q G
Sbjct: 410 GFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKR 469
Query: 201 GAAGSGDPRWGDPRPGE-------GFTAR--FLQPRGCGREFSGPFPSRPGPRTPVPTAP 251
GA G P PGE GF P+G E P P+ P P
Sbjct: 470 GARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP 529
Query: 252 YLAVLPERGGRALT-TPALARTPGSLAPSPPPSPNPRPAP 290
A LP G + LT +P G P P + RP P
Sbjct: 530 GEAGLP--GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP 567
Score = 38.5 bits (88), Expect = 0.008
Identities = 68/239 (28%), Positives = 77/239 (32%), Gaps = 35/239 (14%)
Query: 60 GSAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSP 119
G +GE G +G GERG P GPP S + P S R
Sbjct: 977 GPSGEPGKQ-GPSGASGERGPPGPMGPPGLAGPP------GESGREGAPGAEGSPGRDGS 1029
Query: 120 SGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGS-QPRDCSKDDGGRFPPGP 178
GA+ DR G AGP G A A G P S D G P GP
Sbjct: 1030 PGAKGDRGE-----TGPAGPP----------GAPGAPGAPGPVGPAGKSGDRGETGPAGP 1074
Query: 179 ARTEITTHSRSGPTGSQ-TRGNCGAAG-SGDPRWGDPRPGEGFTARFLQPRGCGREFSGP 236
A +R GP G Q RG+ G G GD R G P G +
Sbjct: 1075 AGPVGPVGAR-GPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSG 1133
Query: 237 FPSRPGPRTPVPTAPYLAVLPERGG-----RALTTPALARTPGSLAPSPPPSPNPRPAP 290
GPR P P A P + G + P G P PP P P P
Sbjct: 1134 ASGPAGPRGP----PGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGP 1188
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 57.4 bits (137), Expect = 2e-08
Identities = 82/284 (28%), Positives = 104/284 (36%), Gaps = 39/284 (13%)
Query: 27 SGLAAAASGR--AASMTPSTASSMEGPRSRWKDS---SGSAGEG-AADCGTAGGGGERGA 80
S LAA+A+ A TP ++ G S +G+AG G AA A G
Sbjct: 31 SQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPP 90
Query: 81 PAGGARGSGGGPP---PWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCA 137
PAG AR GGGP P R + P P P + R P G+ AP A
Sbjct: 91 PAGRARPGGGGPQRPGPPSPRRPLVPAG--PAPPAAKLRPPPEGSAGSCAPVPAAAAVAA 148
Query: 138 GPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTR 197
GP G + G + A G P G PGP + +GP +QT
Sbjct: 149 GPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPG---PGPGKP-------AGPGAAQTL 198
Query: 198 GNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAVLP 257
N AA P A L G P P+ PG T + T P++
Sbjct: 199 -NGSAALLNSHHAAAP-------AVSLVNNGPAALLPLPKPAAPG--TVIQTPPFV---- 244
Query: 258 ERGGRALTTPALARTPGSLAPSPPPS--PNPRPAPSFFLRAGSH 299
G A PA P + AP+ P + P P PAP+ R H
Sbjct: 245 --GAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGH 286
Score = 48.9 bits (115), Expect = 6e-06
Identities = 67/274 (24%), Positives = 89/274 (32%), Gaps = 12/274 (4%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGA 80
P GSA A + A + P A + + + AG G G G G
Sbjct: 129 PPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGK 188
Query: 81 PAG--GARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAG 138
PAG A+ G + +P S + P A ++ F+G A
Sbjct: 189 PAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAA 248
Query: 139 PSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRG 198
P AAPA P + R P PA + P +Q G
Sbjct: 249 PPA-PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG 307
Query: 199 NCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFP--SRPGPRTPVPTAPYLAVL 256
+ GAA + P G P G QP G G + P P P+ V AP A
Sbjct: 308 SAGAAPAPAPAAGGPAGVSG------QP-GPGAAAAAPAPGVKAESPKRVVQAAPPAAQT 360
Query: 257 PERGGRALTTPALARTPGSLAPSPPPSPNPRPAP 290
G A T ++ P P P+ P PAP
Sbjct: 361 LAASGPASTAASMVIGPTMQGALPSPAAVPPPAP 394
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 53.5 bits (127), Expect = 3e-07
Identities = 81/296 (27%), Positives = 110/296 (37%), Gaps = 71/296 (23%)
Query: 6 SRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEG 65
+R+AL +R+ PG A G A A SG + P+ AS++ P ++W D+SG G
Sbjct: 101 ARTALWGRRSRRAAGPGLDCA-GSAPAPSGAQSCGGPAPASALRRPLTQW-DASGGGGRA 158
Query: 66 AAD---CGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGA 122
+ GT GGG R + AG R + P +LR S + C S G+
Sbjct: 159 SHSGPRAGTPGGG--RSSRAGARRKTPLSLCPLKLRKGSSRR-------CQGLGSSWGGS 209
Query: 123 EMDRAPRS--GRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR 180
PR+ R G AG + A RGS+ R C G PP
Sbjct: 210 GTPPPPRALWNRHGGAAG---------------ARAQVRGSEKRACP---GSTLPPSSVL 251
Query: 181 TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR 240
+G G++ RG+ G + F+A G R P +R
Sbjct: 252 --------AGCVGTRARGHGGVQR------------QRFSAPSSHSTGA-RTLPTPSRAR 290
Query: 241 PGPRTPVPTAPYLAVLPERGGRALT----------------TPALARTPGSLAPSP 280
PG P +AP + GG LT T ALA GS AP P
Sbjct: 291 PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 346
Score = 28.5 bits (62), Expect = 8.6
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 23 RGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAPA 82
R A L+ + RAA++ P A P W G C GGG + A
Sbjct: 379 RLGAGRLSCPQAPRAAAL-PGIAVLAPSPAHDW---------GGQRCEGCGGGSQPFAGR 428
Query: 83 GGARGSGGGPPPWR 96
RG G PWR
Sbjct: 429 RAERGKRGAGVPWR 442
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 53.1 bits (126), Expect = 3e-07
Identities = 56/193 (29%), Positives = 73/193 (37%), Gaps = 35/193 (18%)
Query: 60 GSAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSP 119
GS G G G G G+ APA G RG G G P + P R P
Sbjct: 28 GSPGRGRR--GPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERGPRRAAVPELSAQP 85
Query: 120 SGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARG-SQPRDCSKDDGGRFPPGP 178
+G+ RA +G G G S S+GI G+ + +P G S PR PGP
Sbjct: 86 AGS--PRASLAGSDGGGGGGSARSSGISLGYDQRHGSPRSGRSDPR-----------PGP 132
Query: 179 ARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFP 238
+ + +RS + +RG+ GA A FL P C P P
Sbjct: 133 GPPSVGS-ARSSVSSLGSRGSAGA-----------------YADFLPPGACPAPARSPEP 174
Query: 239 SRPGPRTPVPTAP 251
+ P P P+P P
Sbjct: 175 AGPAP-FPLPALP 186
Score = 38.9 bits (89), Expect = 0.006
Identities = 49/165 (29%), Positives = 59/165 (35%), Gaps = 22/165 (13%)
Query: 135 GCAGPSCFSTGICEGHGRVSAAPA-----RGSQPRDCSKDDGGRFPPGPARTEITTHSRS 189
GC P G G G AAPA +GS + D R GP R + S
Sbjct: 26 GCGSPGRGRRGPRPGPGD-EAAPALGRRGKGSGGPEAGADGLSRGERGPRRAAVPELSAQ 84
Query: 190 GPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPT 249
P GS G+ G G G G + + Q G R SG RPGP P
Sbjct: 85 -PAGSPRASLAGSDGGGG---GGSARSSGISLGYDQRHGSPR--SGRSDPRPGPGPPSVG 138
Query: 250 APYLAV--LPERGGRAL--------TTPALARTPGSLAPSPPPSP 284
+ +V L RG PA AR+P P+P P P
Sbjct: 139 SARSSVSSLGSRGSAGAYADFLPPGACPAPARSPEPAGPAPFPLP 183
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 51.2 bits (121), Expect = 1e-06
Identities = 92/359 (25%), Positives = 120/359 (33%), Gaps = 99/359 (27%)
Query: 6 SRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEG 65
+R+AL +R+ PG A G A A SG + P+ AS++ P ++W D+SG G G
Sbjct: 101 ARTALWGRRSRRAAGPGLDCA-GSAPAPSGAQSCGGPAPASALRRPLTQW-DASGGGGRG 158
Query: 66 AAD---CGTAGGGGERGAPAGGAR---------------------------GSGGGPPPW 95
+ GT GGG R + AG R GSG PPP
Sbjct: 159 SHSGPRAGTPGGG--RSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR 216
Query: 96 RLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSA 155
L N A +++ G+ + P S GC G GHG V
Sbjct: 217 ALWNRHGGAAGARAQVRGSEKRACPGSTL---PPSSVLAGCVGTRA------RGHGGVQR 267
Query: 156 APARGSQPRDCSKDDGGRFPPGPARTEITTHSRSG-----PTG----------------- 193
R S P S G +R + S++ PT
Sbjct: 268 Q--RFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRL 325
Query: 194 -----------SQTRGNCGAAGSGDPRWG---DPRPGEGFTARFLQPRGCGREFSGPFPS 239
R + A DPR G +P G AR + G + P PS
Sbjct: 326 GGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPS 385
Query: 240 RPGPRTPVP--TAPYLAVLPERGGRALT----------------TPALARTPGSLAPSP 280
R P P P +AP + GG LT T ALA GS AP P
Sbjct: 386 RARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 444
Score = 28.5 bits (62), Expect = 8.6
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 23 RGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAPA 82
R A L+ + RAA++ P A P W G C GGG + A
Sbjct: 477 RLGAGRLSCPQAPRAAAL-PGIAVLAPSPAHDW---------GGQRCEGCGGGSQPFAGR 526
Query: 83 GGARGSGGGPPPWR 96
RG G PWR
Sbjct: 527 RAERGKRGAGVPWR 540
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 51.2 bits (121), Expect = 1e-06
Identities = 92/359 (25%), Positives = 120/359 (33%), Gaps = 99/359 (27%)
Query: 6 SRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEG 65
+R+AL +R+ PG A G A A SG + P+ AS++ P ++W D+SG G G
Sbjct: 101 ARTALWGRRSRRAAGPGLDCA-GSAPAPSGAQSCGGPAPASALRRPLTQW-DASGGGGRG 158
Query: 66 AAD---CGTAGGGGERGAPAGGAR---------------------------GSGGGPPPW 95
+ GT GGG R + AG R GSG PPP
Sbjct: 159 SHSGPRAGTPGGG--RSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR 216
Query: 96 RLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSA 155
L N A +++ G+ + P S GC G GHG V
Sbjct: 217 ALWNRHGGAAGARAQVRGSEKRACPGSTL---PPSSVLAGCVGTRA------RGHGGVQR 267
Query: 156 APARGSQPRDCSKDDGGRFPPGPARTEITTHSRSG-----PTG----------------- 193
R S P S G +R + S++ PT
Sbjct: 268 Q--RFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRL 325
Query: 194 -----------SQTRGNCGAAGSGDPRWG---DPRPGEGFTARFLQPRGCGREFSGPFPS 239
R + A DPR G +P G AR + G + P PS
Sbjct: 326 GGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPS 385
Query: 240 RPGPRTPVP--TAPYLAVLPERGGRALT----------------TPALARTPGSLAPSP 280
R P P P +AP + GG LT T ALA GS AP P
Sbjct: 386 RARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 444
Score = 28.5 bits (62), Expect = 8.6
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 23 RGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAPA 82
R A L+ + RAA++ P A P W G C GGG + A
Sbjct: 477 RLGAGRLSCPQAPRAAAL-PGIAVLAPSPAHDW---------GGQRCEGCGGGSQPFAGR 526
Query: 83 GGARGSGGGPPPWR 96
RG G PWR
Sbjct: 527 RAERGKRGAGVPWR 540
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 50.4 bits (119), Expect = 2e-06
Identities = 78/298 (26%), Positives = 103/298 (34%), Gaps = 57/298 (19%)
Query: 9 ALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSA-GEGAA 67
AL + GG P G + LA + G + S GP +SG A G AA
Sbjct: 309 ALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAA 368
Query: 68 DCGTAGGGGERGAPA-------------GGARGSGGGPPPWRLRNEVSPKASP---PRPT 111
G AGGGG P G A G PPP R+ +PK P
Sbjct: 369 GGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPP--PRSTATPKCQSLGGPAAA 426
Query: 112 CSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGR-VSAAPARGSQPRDCSKDD 170
+ + S +G +A G+ G GP + G G + +S AP+ P +
Sbjct: 427 YATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGP---PQPP 483
Query: 171 GGRFPPGPARTEI---------------------TTHSRSGPTG----SQTRGNCGAAGS 205
G PPG A + HS+ PT S + G+ A
Sbjct: 484 SGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALSG 543
Query: 206 GDPRWGDPRPGEGFTA------RFLQ-PRGCGREFSGPFPSRPGP--RTPVPTAPYLA 254
WG G G A R LQ P GR P PG + + +AP+LA
Sbjct: 544 HGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLA 601
Score = 33.9 bits (76), Expect = 0.21
Identities = 37/123 (30%), Positives = 45/123 (36%), Gaps = 15/123 (12%)
Query: 193 GSQTRGNCGAAGSGDPRWGDPRPGEGFTAR--FLQPRG--CGREFSGPFPSRPGPRTPVP 248
G + G AG + GDP+ G G P G C SG P PG P
Sbjct: 955 GGGAADDYGKAGPPEDE-GDPKAGAGPPPGPPAYDPYGPYCPGRASGAGPETPGLGLD-P 1012
Query: 249 TAPYLAVLPERGGRALTTPA--LARTPGSLAPSPPPSPNPRPAPSFFLRAGSHLVRKVSC 306
P PE P + P AP PPP P P PAP+ + G L + C
Sbjct: 1013 NKP-----PELPSTVNAEPLGLIQSGPHQAAPPPPPPPPPPPAPASEPKGG--LTSPIFC 1065
Query: 307 GTR 309
T+
Sbjct: 1066 STK 1068
Score = 33.5 bits (75), Expect = 0.27
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 236 PFPSRPGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAP 290
P P+ P P+ P P P LP TP+ P P PP P+P P P
Sbjct: 1463 PAPT-PQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPP 1516
Score = 32.7 bits (73), Expect = 0.46
Identities = 16/48 (33%), Positives = 18/48 (37%)
Query: 243 PRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAP 290
P VP P L LP P L P P P+P P+P P
Sbjct: 1426 PAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPP 1473
Score = 32.0 bits (71), Expect = 0.78
Identities = 74/298 (24%), Positives = 94/298 (31%), Gaps = 62/298 (20%)
Query: 4 FSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTA----SSMEGPRS-RWKDS 58
F + G A G G+G S L A G A T ++ P R +
Sbjct: 599 FLAPPGAGSYAAGAGGYKGKGDGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPRTSGA 658
Query: 59 SGSAGEGAADCGTAGGGGERGAPAGGARGSGGGPP--PWRLRNEVSPKASPPRPTC-SVC 115
G GE A + G GG GA GGPP P+ L E P R SV
Sbjct: 659 DGLVGEDGAADASKGLGGSGGA---------GGPPGTPYELAKE-----DPQRYHLQSVI 704
Query: 116 RKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFP 175
R S A +D + LG GR+ + + + GG P
Sbjct: 705 RTS---ASLDEGATAALELGL--------------GRL--------KEKKKGPERGGETP 739
Query: 176 PGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSG 235
G A + + H +G GA P P P + P G E G
Sbjct: 740 EGLATSVV--HYGAGAK------ELGAFLQKSP----PPPPPTAQSTQPTPHGLLLEAGG 787
Query: 236 P---FPSRPGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAP 290
P P P +P+ A P + L AP PPP P P P P
Sbjct: 788 PDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVHLLEPATRDGAPQPPPPPPPPPPP 845
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 50.1 bits (118), Expect = 3e-06
Identities = 74/278 (26%), Positives = 98/278 (35%), Gaps = 54/278 (19%)
Query: 18 GCVPGRGSASGLAAA--ASGRAASMTPSTASSMEGPRSRWKD--SSGSAGEGAADCGTAG 73
GC PGRG G A A A G T +A+ PRS + S C AG
Sbjct: 327 GCDPGRGPTWGRAGASLARGPQPDRTHPSAAVPVCPRSASASPLTPCSVTRSVHRCAPAG 386
Query: 74 GGGERGAPAGGARGSGGGPPPWRLRNEVSP-KASPPRPTCSVCRKSPSGAEMDRAPRSGR 132
GER P +GG P P R R E SP + + K S +R+ + +
Sbjct: 387 ERGERRKP-----NAGGSPAPVRRRPEASPVQKKEKKDKERENEKEKSALARERSLKKRQ 441
Query: 133 FLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPT 192
L A P R+SA+ A P+ ++ P+ + H + P
Sbjct: 442 SLP-ASP----------RARLSASTASELSPKSKAR---------PSSPSTSWHRPASP- 480
Query: 193 GSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGR--EFSGPFPSRPGPRTPVPTA 250
C + G G P G TA P+G R E + PS GP
Sbjct: 481 -------CPSPGPGHTLPPKPPSPRGTTA---SPKGRVRRKEEAKESPSAAGPED----- 525
Query: 251 PYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRP 288
+ R + + P S APSP PSP P P
Sbjct: 526 ------KSQSKRRASNEKESAAPASPAPSPAPSPTPAP 557
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 48.5 bits (114), Expect = 8e-06
Identities = 66/234 (28%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 70 GTAGGGGERGAPA----GGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMD 125
G G GERG P G +G GG P PK SP P+ + P G +
Sbjct: 711 GERGNPGERGEPGITGLPGEKGMAGGHGP------DGPKGSPG-PSGTPGDTGPPG--LQ 761
Query: 126 RAPRSGRFLGCAGPSCFSTGICE--GHGRVSAAPARGSQ----PRDCSKDDGGRFPPGPA 179
P G GP GI E G ARG P + G + PGP
Sbjct: 762 GMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPR 821
Query: 180 RTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPG-EGFTARFLQPRGCGREFSGPFP 238
SR P G GA G P+ D +PG +G Q G
Sbjct: 822 GLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLA 881
Query: 239 SRPGPRTPVPTAPYLAVLPERGGRALT-TPALARTPGSLAPSPPPSPNPRPAPS 291
PGP P V +GGR P PGS PP P P P+
Sbjct: 882 GSPGPHGP------NGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPA 929
Score = 38.9 bits (89), Expect = 0.006
Identities = 69/273 (25%), Positives = 84/273 (30%), Gaps = 72/273 (26%)
Query: 35 GRAASMTPSTASSMEGPRSRWKDSS-----GSAGEGAA--DCGTAGGGGERGAPAGGARG 87
G P+ A EGP+ + ++ GS G A GT G G G+P
Sbjct: 384 GMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPP 443
Query: 88 SGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGIC 147
GPP P P S + G D P F G AGP G
Sbjct: 444 GSAGPP------------GSPGPQGSTGPQGIRGQPGD--PGVPGFKGEAGPK----GEP 485
Query: 148 EGHGRVSAAPARGSQPRDCSKDDGGRF-PPGPARTEITTHSRS--------GPTGSQTRG 198
HG G + + + D G PPGP +R GP G+Q G
Sbjct: 486 GPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQ--G 543
Query: 199 NCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAVLPE 258
G GS P+ PG P PG LP
Sbjct: 544 ERGPVGSSGPKGSQGDPGR--------------------PGEPG-------------LP- 569
Query: 259 RGGRALT-TPALARTPGSLAPSPPPSPNPRPAP 290
G R LT P + G L P P + RP P
Sbjct: 570 -GARGLTGNPGVQGPEGKLGPLGAPGEDGRPGP 601
Score = 38.5 bits (88), Expect = 0.008
Identities = 72/245 (29%), Positives = 84/245 (34%), Gaps = 42/245 (17%)
Query: 56 KDSSGSAGEGAADCGTAGGGGERGAPA-GGARGSGGGPPPWRLRNEVSPKASPPRPTCSV 114
K SSG G+ + G AG G+RGAP G G G P L E + PP PT
Sbjct: 620 KGSSGDPGK-PGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGE-RGEQGPPGPTGFQ 677
Query: 115 CRKSPSGAEMD-------RAPRSGRFLGCAGPSCFSTGICE-GHGRVSAAP-----ARGS 161
P G + P +G GP E G ++ P A G
Sbjct: 678 GLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGH 737
Query: 162 QPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQ----TRGNCGAAGSGDPRWGDPRPGE 217
P DG + PGP+ T T GP G Q RG G G R G G
Sbjct: 738 GP------DGPKGSPGPSGTPGDT----GPPGLQGMPGERGIAGTPGPKGDRGGIGEKGA 787
Query: 218 GFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAVLPERGGRALTTPALAR-TPGSL 276
TA RG PGP P A E G R L P +R PGS
Sbjct: 788 EGTAGNDGARGL-----------PGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSR 836
Query: 277 APSPP 281
+ P
Sbjct: 837 GENGP 841
Score = 36.6 bits (83), Expect = 0.032
Identities = 65/233 (27%), Positives = 72/233 (30%), Gaps = 32/233 (13%)
Query: 22 GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAP 81
G A G R + P S P + D + A GT+G G G P
Sbjct: 390 GPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPP 449
Query: 82 AG----------GARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSG 131
G RG G P + E PK P P P G E R PR
Sbjct: 450 GSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGE-PGPHGIQGPIGPPGEEGKRGPRGD 508
Query: 132 RFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGP 191
G GP G V A G+ R DG P G A+ E SGP
Sbjct: 509 P--GTVGPP----------GPVGERGAPGN--RGFPGSDGLPGPKG-AQGERGPVGSSGP 553
Query: 192 TGSQ-TRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGP 243
GSQ G G G R PG L P G E RPGP
Sbjct: 554 KGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGE-----DGRPGP 601
Score = 36.2 bits (82), Expect = 0.041
Identities = 79/296 (26%), Positives = 92/296 (31%), Gaps = 58/296 (19%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKD--SSGSAGEGAADCGTAGGGGER 78
PG G A G P EGP D S G G+ G GG G++
Sbjct: 911 PGSAGRVGPPGPA-GAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGD-RGPAGPPGGPGDK 968
Query: 79 GAPA-GGARGSGGGPPPWRLRNEVSPKASP-----------PRPTCSVCRKSPSGAEMDR 126
G P G G G P P + P P P + + P+GA D+
Sbjct: 969 GDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDK 1028
Query: 127 APRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDD-GGRFPPGPARTEITT 185
P G GP S G G A G+ RD + + G R PGPA
Sbjct: 1029 GPP-----GPVGPP-GSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPA------ 1076
Query: 186 HSRSGPTGSQ----TRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRP 241
G GSQ T G GA G R GDP G P GR P
Sbjct: 1077 ----GLPGSQGAPGTPGPVGAPGDAGQR-GDP----GSRGPIGPP---GRAGKRGLPGPQ 1124
Query: 242 GPRTPVPTAPYLAVLPERGGRALT-------------TPALARTPGSLAPSPPPSP 284
GPR ++G R T A PG P PP P
Sbjct: 1125 GPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGP 1180
Score = 33.5 bits (75), Expect = 0.27
Identities = 49/184 (26%), Positives = 59/184 (32%), Gaps = 52/184 (28%)
Query: 106 SPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRD 165
+PP C VC ++P G + G GR G P
Sbjct: 87 TPPGECCPVCSQTPGGGNTN----------------------FGRGRKGQKGEPGLVP-- 122
Query: 166 CSKDDGGRFPPGPARTEITTHSRSGPTGSQ----TRGNCGAAGSGDPRWGDPRPGEGFTA 221
G R PGPA GP GSQ RG G G P+ D PG
Sbjct: 123 --VVTGIRGRPGPA----------GPPGSQGPRGERGPKGRPGPRGPQGIDGEPG----- 165
Query: 222 RFLQPRGCGREFSGPFPSRPGP-RTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSP 280
P G PS PGP P + +A L E+ G + PGS+ P
Sbjct: 166 ---VPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLG---SQVGLMPGSVGPVG 219
Query: 281 PPSP 284
P P
Sbjct: 220 PRGP 223
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 48.5 bits (114), Expect = 8e-06
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 2 TSFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGS 61
+S SS S+ + S+S ++++S ++S + S++SS + +DSS S
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS 2680
Query: 62 AGEGAADCGTAGGGGERGAPAGGARGSGGGPP----PWRLRNEVSPKASPPRPTCSVCRK 117
+ + AA TAG + P + +G P P + P+A PP+PT + K
Sbjct: 2681 SDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQPTQPLQPK 2740
Query: 118 SPSGAEMDRAPRSG 131
+ +GA+ R G
Sbjct: 2741 AQAGAKSRPKKREG 2754
Score = 35.4 bits (80), Expect = 0.071
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 19/85 (22%)
Query: 60 GSAGEGAADCGTAGGGGERGAPAGGAR----------GSGGGPPPW------RLRNEVSP 103
GS A T GGG GAPA G+ G GG PPP R R E
Sbjct: 174 GSLHSHAPSARTPGGGHSSGAPAKGSSSRDGPAKERAGRGGEPPPLFGKKDPRARGE--- 230
Query: 104 KASPPRPTCSVCRKSPSGAEMDRAP 128
+AS PR + +++ + DR P
Sbjct: 231 EASGPRGVVDLTQEARAEGRQDRGP 255
Score = 33.1 bits (74), Expect = 0.35
Identities = 51/225 (22%), Positives = 72/225 (32%), Gaps = 38/225 (16%)
Query: 31 AAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAPAGGARGSGG 90
A G S + S++SS S SSGS EG + G GG G+GG
Sbjct: 2549 AEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGG---------CGTGG 2599
Query: 91 GPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGH 150
SP +S + S S S + + S + S S+
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
Query: 151 GRVSAAPARGSQPRD----CSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSG 206
S++ + S D CS DD PA T + + PT + + AG
Sbjct: 2660 SSSSSSSSSSSSTTDEDSSCSSDD----EAAPAPTAGPSAQAALPTKATKQ-----AGKA 2710
Query: 207 DPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAP 251
P P G++ P P P P+ P P
Sbjct: 2711 RPSAHSP----------------GKKTPAPQPQAPPPQPTQPLQP 2739
Score = 33.1 bits (74), Expect = 0.35
Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 17/173 (9%)
Query: 11 GRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCG 70
G + GGC G + S AAS RAAS S++SS S SS S+ ++
Sbjct: 2587 GDKNGDGGCGTGGRNCS----AASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2642
Query: 71 TAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKAS-------PPRPTCSVCRKSPSGAE 123
++ + + + S + +S P PT PS A+
Sbjct: 2643 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTA-----GPS-AQ 2696
Query: 124 MDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPP 176
++ + G A PS S G + A P + +QP G + P
Sbjct: 2697 AALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQPTQPLQPKAQAGAKSRP 2749
Score = 32.0 bits (71), Expect = 0.78
Identities = 41/153 (26%), Positives = 49/153 (32%), Gaps = 12/153 (7%)
Query: 149 GHGRVSAAPARGSQPRDCSKDD----GGRFPP--GPARTEITTHSRSGPTGSQTRGNCGA 202
G G S APA+GS RD + GG PP G SGP G
Sbjct: 187 GGGHSSGAPAKGSSSRDGPAKERAGRGGEPPPLFGKKDPRARGEEASGPRGVVDLTQEAR 246
Query: 203 AGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAVLPERGG- 261
A R G PR E + + + + P L RGG
Sbjct: 247 AEGRQDR-GPPRLAERLSPFLAESKTKNAALQPSVLTMCNGGAGDVGLPALVAEAGRGGA 305
Query: 262 ----RALTTPALARTPGSLAPSPPPSPNPRPAP 290
R L R +L P P P P+P P P
Sbjct: 306 KEAARQDEGARLLRRTETLLPGPRPCPSPLPPP 338
Score = 30.0 bits (66), Expect = 3.0
Identities = 41/151 (27%), Positives = 52/151 (34%), Gaps = 26/151 (17%)
Query: 157 PARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNC---GAAGSGDP----R 209
P+ + R SKD G G A +E G++ RG A GD
Sbjct: 2298 PSAKRRSRKTSKDTGEGKDGGTAGSE--------EPGAKARGRGRKPSAKAKGDRAATLE 2349
Query: 210 WGDPRPGEGFTARFLQPRGC-GREFSGPFP---------SRPGPRTPVPTAPYLAVLPER 259
G+P T L+P G + S P P +RP P P P P P
Sbjct: 2350 EGNPTDEVPSTPLALEPSSTPGSKKSPPEPVDKRAKAPKARPAPPQPSPAPPAFTSCPAP 2409
Query: 260 GGRA-LTTPALARTPGSLAPSPPPSPNPRPA 289
A L PA + P L P P P+ A
Sbjct: 2410 EPFAELPAPATSLAPAPLITMPATRPKPKKA 2440
Score = 29.6 bits (65), Expect = 3.9
Identities = 39/127 (30%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 193 GSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGC-GREFSGPFPSRPGPRTPVPTAP 251
G + G G A +G PR G A P G G+ S P P PR P A
Sbjct: 954 GLEAAGKAGLATAGPGLL--PRKPPGLAAG---PAGTYGKAVSPP----PSPRAS-PVAA 1003
Query: 252 YLAVLPERGGRALTTPALA--RTPGSLAPSPPP-SPNPRPAPSFFLRAGSHLVRKVSCGT 308
A + ++ PA A TP S SPPP SP P P + A ++V K
Sbjct: 1004 LKAKVIQKLEDVSKPPAYAYPATPSSHPTSPPPASPPPTPGITRKEEAPENVVEKKDLEL 1063
Query: 309 RREIQEP 315
+E P
Sbjct: 1064 EKEAPSP 1070
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 48.1 bits (113), Expect = 1e-05
Identities = 77/303 (25%), Positives = 99/303 (32%), Gaps = 49/303 (16%)
Query: 20 VPGRGSASGLA--------AAASGRAASMTPSTASSMEGP-----RSRWKDSSGSAGEGA 66
+PG+ +G A A G + PS + GP G GE
Sbjct: 631 LPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 690
Query: 67 ADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKS-----PSG 121
A G G GERG P G RGS G + P+ P P + + P G
Sbjct: 691 AP-GLVGPRGERGFP--GERGSPGA------QGLQGPRGLPGTPGTDGPKGASGPAGPPG 741
Query: 122 AE----MDRAPRSGRFLGCAGPSCFSTGICE---------GHGRVSAAPARGSQPRDCSK 168
A+ + P G AGP + E GR P P +
Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 801
Query: 169 DDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRG 228
+ G PPGPA + +R P G G AG P D +PG A+ Q
Sbjct: 802 EKGEVGPPGPAGS---AGARGAPGERGETGPPGPAGFAGPPGADGQPG----AKGEQGEA 854
Query: 229 CGREFSGPFPSRPGPR-TPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPR 287
G++ P GP P P P P+ A P PG+ PP N
Sbjct: 855 -GQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN 913
Query: 288 PAP 290
P P
Sbjct: 914 PGP 916
Score = 47.4 bits (111), Expect = 2e-05
Identities = 90/322 (27%), Positives = 113/322 (35%), Gaps = 61/322 (18%)
Query: 6 SRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSS--GSAG 63
+R A G A G PG G ++G P S +GP+ DS G AG
Sbjct: 886 ARGAQGPPGATG--FPGAAGRVG-PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAG 942
Query: 64 EGAADCGTAGGGGERGAPA-GGARGSGGGPPPWRLRNEVSPKASP-----------PRPT 111
E G AG GE+G P G G+ G P P L + P P P+
Sbjct: 943 EPGLQ-GPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS 1001
Query: 112 CSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCS---K 168
++ GA DR P G GP TG GR + A G RD + K
Sbjct: 1002 GEPGKQGAPGASGDRGPP-----GPVGPPGL-TGPAGEPGREGSPGADGPPGRDGAAGVK 1055
Query: 169 DDGGRF-------PPGPARTEITTHSRSGPTGSQ-TRGNCGAAGSGDPRW-------GDP 213
D G PGP + +GPTG Q RG GA G P P
Sbjct: 1056 GDRGETGAVGAPGAPGPPGSP----GPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGP 1111
Query: 214 RPGEGFTARFLQPRGCG----REFSGPFPSRPGPRTPVPTAPYLAVLPERGGRALTTPAL 269
+ G +P G R F+G PGP P P+ ++G P+
Sbjct: 1112 QGPRGDKGEAGEPGERGLKGHRGFTG-LQGLPGP--PGPSG-------DQGASGPAGPSG 1161
Query: 270 AR-TPGSLAPSPPPSPNPRPAP 290
R PG + PS N P P
Sbjct: 1162 PRGPPGPVGPSGKDGANGIPGP 1183
Score = 45.8 bits (107), Expect = 5e-05
Identities = 80/284 (28%), Positives = 94/284 (33%), Gaps = 51/284 (17%)
Query: 56 KDSSGSAGEGAAD--CGTAGGGGERG----APAGGARGSGGGPPPWRLRNEVSPKASPPR 109
K SGS GE + G G GERG A A GARG+ G P P V P P
Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGF 367
Query: 110 PTCSVCR--------KSPSGAEMDRA-PRSGRFLGCAGPS--CFSTGICEGHGRVSAAPA 158
P + + P GA+ R P + G AG S + GI G A
Sbjct: 368 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 427
Query: 159 RGSQ----PRDCSKDDGGRFPPGPA-----------RTEITTHSRSGPTGSQ-------- 195
G+ PR G P GP + E GP G Q
Sbjct: 428 AGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGE 487
Query: 196 -----TRGNCGAAGSGDPRWGDPRPG-EGFTAR--FLQPRGCGREFSGPFPSRPGPRTPV 247
RG G G P PG GF + P+G E + P
Sbjct: 488 EGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGD 547
Query: 248 PTAPYLAVLPERGGRALT-TPALARTPGSLAPSPPPSPNPRPAP 290
P P LP G R LT P A G + PS P + RP P
Sbjct: 548 PGRPGEPGLP--GARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP 589
Score = 38.9 bits (89), Expect = 0.006
Identities = 71/289 (24%), Positives = 85/289 (29%), Gaps = 63/289 (21%)
Query: 7 RSALGRQRAWGGCVP-GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEG 65
R G Q A G P G+ G+A + P A P ++ A
Sbjct: 437 RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGE 496
Query: 66 AADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMD 125
G G GERGAP G RG G P GA +
Sbjct: 497 PGGVGPIGPPGERGAP--GNRGFPGQDG----------------------LAGPKGAPGE 532
Query: 126 RAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITT 185
R P G AGP + G G ARG R G+ P A E
Sbjct: 533 RGPS-----GLAGPK-GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE--- 583
Query: 186 HSRSGPTGSQ-TRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPR 244
R GP G Q RG G G P+ + PG+
Sbjct: 584 DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK------------------------AGE 619
Query: 245 TPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFF 293
+P AP L LP + G A PG P+ P PS F
Sbjct: 620 KGLPGAPGLRGLPGKDGET----GAAGPPGPAGPAGERGEQGAPGPSGF 664
Score = 35.4 bits (80), Expect = 0.071
Identities = 44/164 (26%), Positives = 54/164 (32%), Gaps = 36/164 (21%)
Query: 139 PSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQ--- 195
P C T + G+ +G +P D G + PPGP GP G Q
Sbjct: 87 PIC-PTDLATASGQPGPKGQKG-EPGDIKDIVGPKGPPGP----------QGPAGEQGPR 134
Query: 196 -TRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLA 254
RG+ G G+ PR D PG GP P PGP P A
Sbjct: 135 GDRGDKGEKGAPGPRGRDGEPGTPGNP-------------GP-PGPPGPPGPPGLGGNFA 180
Query: 255 V-----LPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFF 293
E+ G A + G + P PP P P P F
Sbjct: 181 AQMAGGFDEKAGGA-QLGVMQGPMGPMGPRGPPGPAGAPGPQGF 223
Score = 33.5 bits (75), Expect = 0.27
Identities = 74/264 (28%), Positives = 88/264 (33%), Gaps = 51/264 (19%)
Query: 43 STASSMEGPRSRW------KDSSGSAGEGAADCGTAGGGGERGAPAG--GARGSGGGPPP 94
+TAS GP+ + KD G G G G GE+G P G G +G G P P
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPP----GPQGPAGEQG-PRGDRGDKGEKGAPGP 148
Query: 95 WRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVS 154
E +P P P G P LG + + G E G
Sbjct: 149 RGRDGEPGTPGNPGPP-------GPPG------PPGPPGLGGNFAAQMAGGFDEKAGGAQ 195
Query: 155 AAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTR----GNCGAAGSGDPRW 210
+G G R PPGPA GP G Q G G +G PR
Sbjct: 196 LGVMQGPMG-----PMGPRGPPGPA-------GAPGPQGFQGNPGEPGEPGVSGPMGPRG 243
Query: 211 GDPRPGE-GFTARFLQPRGCG-REFSGPFPSRPGPRTP-VPTAPYLAVLPERGGRALT-T 266
PG+ G +P G R GP +R P TP +P V RG L
Sbjct: 244 PPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP-----GVKGHRGYPGLDGA 298
Query: 267 PALARTPGSLAPSPPPSPNPRPAP 290
A PG S P N P P
Sbjct: 299 KGEAGAPGVKGESGSPGENGSPGP 322
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 48.1 bits (113), Expect = 1e-05
Identities = 77/303 (25%), Positives = 99/303 (32%), Gaps = 49/303 (16%)
Query: 20 VPGRGSASGLA--------AAASGRAASMTPSTASSMEGP-----RSRWKDSSGSAGEGA 66
+PG+ +G A A G + PS + GP G GE
Sbjct: 562 LPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 621
Query: 67 ADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKS-----PSG 121
A G G GERG P G RGS G + P+ P P + + P G
Sbjct: 622 AP-GLVGPRGERGFP--GERGSPGA------QGLQGPRGLPGTPGTDGPKGASGPAGPPG 672
Query: 122 AE----MDRAPRSGRFLGCAGPSCFSTGICE---------GHGRVSAAPARGSQPRDCSK 168
A+ + P G AGP + E GR P P +
Sbjct: 673 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANG 732
Query: 169 DDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRG 228
+ G PPGPA + +R P G G AG P D +PG A+ Q
Sbjct: 733 EKGEVGPPGPAGS---AGARGAPGERGETGPPGPAGFAGPPGADGQPG----AKGEQGEA 785
Query: 229 CGREFSGPFPSRPGPR-TPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPR 287
G++ P GP P P P P+ A P PG+ PP N
Sbjct: 786 -GQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGN 844
Query: 288 PAP 290
P P
Sbjct: 845 PGP 847
Score = 47.4 bits (111), Expect = 2e-05
Identities = 90/322 (27%), Positives = 113/322 (35%), Gaps = 61/322 (18%)
Query: 6 SRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSS--GSAG 63
+R A G A G PG G ++G P S +GP+ DS G AG
Sbjct: 817 ARGAQGPPGATG--FPGAAGRVG-PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAG 873
Query: 64 EGAADCGTAGGGGERGAPA-GGARGSGGGPPPWRLRNEVSPKASP-----------PRPT 111
E G AG GE+G P G G+ G P P L + P P P+
Sbjct: 874 EPGLQ-GPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS 932
Query: 112 CSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCS---K 168
++ GA DR P G GP TG GR + A G RD + K
Sbjct: 933 GEPGKQGAPGASGDRGPP-----GPVGPPGL-TGPAGEPGREGSPGADGPPGRDGAAGVK 986
Query: 169 DDGGRF-------PPGPARTEITTHSRSGPTGSQ-TRGNCGAAGSGDPRW-------GDP 213
D G PGP + +GPTG Q RG GA G P P
Sbjct: 987 GDRGETGAVGAPGAPGPPGSP----GPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGP 1042
Query: 214 RPGEGFTARFLQPRGCG----REFSGPFPSRPGPRTPVPTAPYLAVLPERGGRALTTPAL 269
+ G +P G R F+G PGP P P+ ++G P+
Sbjct: 1043 QGPRGDKGEAGEPGERGLKGHRGFTG-LQGLPGP--PGPSG-------DQGASGPAGPSG 1092
Query: 270 AR-TPGSLAPSPPPSPNPRPAP 290
R PG + PS N P P
Sbjct: 1093 PRGPPGPVGPSGKDGANGIPGP 1114
Score = 45.8 bits (107), Expect = 5e-05
Identities = 80/284 (28%), Positives = 94/284 (33%), Gaps = 51/284 (17%)
Query: 56 KDSSGSAGEGAAD--CGTAGGGGERG----APAGGARGSGGGPPPWRLRNEVSPKASPPR 109
K SGS GE + G G GERG A A GARG+ G P P V P P
Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGF 298
Query: 110 PTCSVCR--------KSPSGAEMDRA-PRSGRFLGCAGPS--CFSTGICEGHGRVSAAPA 158
P + + P GA+ R P + G AG S + GI G A
Sbjct: 299 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 358
Query: 159 RGSQ----PRDCSKDDGGRFPPGPA-----------RTEITTHSRSGPTGSQ-------- 195
G+ PR G P GP + E GP G Q
Sbjct: 359 AGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGE 418
Query: 196 -----TRGNCGAAGSGDPRWGDPRPG-EGFTAR--FLQPRGCGREFSGPFPSRPGPRTPV 247
RG G G P PG GF + P+G E + P
Sbjct: 419 EGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGD 478
Query: 248 PTAPYLAVLPERGGRALT-TPALARTPGSLAPSPPPSPNPRPAP 290
P P LP G R LT P A G + PS P + RP P
Sbjct: 479 PGRPGEPGLP--GARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP 520
Score = 38.9 bits (89), Expect = 0.006
Identities = 71/289 (24%), Positives = 85/289 (29%), Gaps = 63/289 (21%)
Query: 7 RSALGRQRAWGGCVP-GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEG 65
R G Q A G P G+ G+A + P A P ++ A
Sbjct: 368 RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGE 427
Query: 66 AADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMD 125
G G GERGAP G RG G P GA +
Sbjct: 428 PGGVGPIGPPGERGAP--GNRGFPGQDG----------------------LAGPKGAPGE 463
Query: 126 RAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITT 185
R P G AGP + G G ARG R G+ P A E
Sbjct: 464 RGPS-----GLAGPK-GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE--- 514
Query: 186 HSRSGPTGSQ-TRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPR 244
R GP G Q RG G G P+ + PG+
Sbjct: 515 DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK------------------------AGE 550
Query: 245 TPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFF 293
+P AP L LP + G A PG P+ P PS F
Sbjct: 551 KGLPGAPGLRGLPGKDGET----GAAGPPGPAGPAGERGEQGAPGPSGF 595
Score = 36.2 bits (82), Expect = 0.041
Identities = 42/157 (26%), Positives = 51/157 (32%), Gaps = 35/157 (22%)
Query: 147 CEGHGRVSAAP-ARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQ----TRGNCG 201
C+G P + +P D G + PPGP GP G Q RG+ G
Sbjct: 23 CQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGP----------QGPAGEQGPRGDRGDKG 72
Query: 202 AAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAV-----L 256
G+ PR D PG GP P PGP P A
Sbjct: 73 EKGAPGPRGRDGEPGTPGNP-------------GP-PGPPGPPGPPGLGGNFAAQMAGGF 118
Query: 257 PERGGRALTTPALARTPGSLAPSPPPSPNPRPAPSFF 293
E+ G A + G + P PP P P P F
Sbjct: 119 DEKAGGA-QLGVMQGPMGPMGPRGPPGPAGAPGPQGF 154
Score = 31.2 bits (69), Expect = 1.3
Identities = 73/257 (28%), Positives = 85/257 (33%), Gaps = 51/257 (19%)
Query: 42 PSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEV 101
P + GP+ G AGE G G GE+GAP G RG G P
Sbjct: 40 PGDIKDIVGPKGP-PGPQGPAGEQGPR-GDRGDKGEKGAP--GPRGRDGEPGTPGNPGPP 95
Query: 102 SPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGS 161
P PP P P A +G F AG + G+ +G P
Sbjct: 96 GPPG-PPGP--------PGLGGNFAAQMAGGFDEKAGGA--QLGVMQG-------PMGPM 137
Query: 162 QPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTR----GNCGAAGSGDPRWGDPRPGE 217
PR PPGPA GP G Q G G +G PR PG+
Sbjct: 138 GPRG---------PPGPA-------GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGK 181
Query: 218 -GFTARFLQPRGCG-REFSGPFPSRPGPRTP-VPTAPYLAVLPERGGRALT-TPALARTP 273
G +P G R GP +R P TP +P V RG L A P
Sbjct: 182 PGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP-----GVKGHRGYPGLDGAKGEAGAP 236
Query: 274 GSLAPSPPPSPNPRPAP 290
G S P N P P
Sbjct: 237 GVKGESGSPGENGSPGP 253
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 48.1 bits (113), Expect = 1e-05
Identities = 49/143 (34%), Positives = 55/143 (38%), Gaps = 13/143 (9%)
Query: 5 SSRSALGRQRAWGGCV-PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAG 63
S R A R W P R S G AA G PS A GP S S+
Sbjct: 17 SRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPY----PSAAPPPPGPGP--PPSRQSSP 70
Query: 64 EGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAE 123
A+DC + G G G R G G PP + P ASP P + R SP GA
Sbjct: 71 PSASDCFGSNGNGGGAFRPGSRRLLGLGGPPRPFVVLLLPLASPGAPPAAPTRASPLGAR 130
Query: 124 MDRAPRSGRFL-----GCAGPSC 141
PRSG L GC P+C
Sbjct: 131 AS-PPRSGVSLARPAPGCPRPAC 152
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 48.1 bits (113), Expect = 1e-05
Identities = 59/231 (25%), Positives = 76/231 (32%), Gaps = 49/231 (21%)
Query: 17 GGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGG 76
GG G G G+ G S+ S G S S+G G + C ++GGGG
Sbjct: 65 GGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGS----GCFSSGGGGSGCFSSGGGG 120
Query: 77 ERGA-----PAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSG 131
G +GG SGGG S C S G +A +
Sbjct: 121 SSGGGSGCFSSGGGGSSGGG---------------------SGCFSSGGGGFSGQAVQCQ 159
Query: 132 RFLGCA-------GPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEIT 184
+ G + G CFS+G G G V GS C G G ++
Sbjct: 160 SYGGVSSGGSSGGGSGCFSSG--GGGGSVCGYSGGGS---GCGGGSSGGSGSGYVSSQQV 214
Query: 185 THSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSG 235
T + P S G+ G GSG G G + GCG SG
Sbjct: 215 TQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSS-------GCGGGSSG 258
Score = 41.2 bits (95), Expect = 0.001
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 17 GGCVPG-RGSASGLAAAASGRAASMTPS----TASSMEGPRSRWKDSSGSAGEGAADCGT 71
GG V G G SG +SG + S S T +S S SSG G G + C +
Sbjct: 183 GGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFS 242
Query: 72 AGGGGERGAPAGGARGSGGG 91
+GGGG GG+ G G G
Sbjct: 243 SGGGGGSSGCGGGSSGIGSG 262
Score = 34.3 bits (77), Expect = 0.16
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 60 GSAGEGAADCGTAGGGGERGAPAGGARGSGGG 91
GS+G G CG +GGGG G GG GGG
Sbjct: 45 GSSGSG---CGYSGGGGYSGGGCGGGSSGGGG 73
Score = 33.5 bits (75), Expect = 0.27
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 60 GSAGEGAADCGTAGGGGERGAPAGGARGSGGG 91
G G G CG GGGG G +G G GG
Sbjct: 25 GGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGG 56
Score = 33.5 bits (75), Expect = 0.27
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 19 CVP----GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGG 74
C P G GS+ G + SG +S +S G S +G G+ G + G
Sbjct: 219 CAPQPSYGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSG 278
Query: 75 GGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPT 111
GG G+ GG+ GSG G P + ++ K +P P+
Sbjct: 279 GGGGGSSVGGS-GSGKGVP---ICHQTQQKQAPTWPS 311
Score = 28.5 bits (62), Expect = 8.6
Identities = 21/89 (23%), Positives = 32/89 (35%)
Query: 3 SFSSRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSA 62
S+ S+ G GC G + + G + S+ S G S + + S
Sbjct: 160 SYGGVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSC 219
Query: 63 GEGAADCGTAGGGGERGAPAGGARGSGGG 91
+ G + GGG G + G GGG
Sbjct: 220 APQPSYGGGSSGGGGSGGSGCFSSGGGGG 248
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 47.8 bits (112), Expect = 1e-05
Identities = 74/264 (28%), Positives = 86/264 (32%), Gaps = 35/264 (13%)
Query: 57 DSSGSAGEGAADCGTAGGGGERGAPAGGARGS--GGGPPPWRLRNEVSPKASPPRPTCSV 114
D AG G G GGGG G GG GS GGGPP + A P+ +
Sbjct: 60 DKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQ----AGMPKLRSTA 115
Query: 115 CRKSPS-GAEMDRAPRSGR------FLGCAGPSCFSTGICEGHGRVSAAPARGSQPRD-- 165
R + S G+ P GR F +GP F GH P R P
Sbjct: 116 NRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVP-SPGHRSGPPEPQRNRMPPPRP 174
Query: 166 --CSKDDG--GRFPPGPARTEITTHSRS-------------GPTGSQTRGNCGAA-GSGD 207
SK D P P + + H+R GPT GN G A G G
Sbjct: 175 DVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGS 234
Query: 208 PRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAV-LPERGGRALTT 266
R F+ R P R P P P P+ AV P
Sbjct: 235 IRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPV 294
Query: 267 PALARTPGSLAPSPPPSPNPRPAP 290
P+ R S PPP P RP P
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPGP 318
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 47.8 bits (112), Expect = 1e-05
Identities = 74/264 (28%), Positives = 86/264 (32%), Gaps = 35/264 (13%)
Query: 57 DSSGSAGEGAADCGTAGGGGERGAPAGGARGS--GGGPPPWRLRNEVSPKASPPRPTCSV 114
D AG G G GGGG G GG GS GGGPP + A P+ +
Sbjct: 60 DKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQ----AGMPKLRSTA 115
Query: 115 CRKSPS-GAEMDRAPRSGR------FLGCAGPSCFSTGICEGHGRVSAAPARGSQPRD-- 165
R + S G+ P GR F +GP F GH P R P
Sbjct: 116 NRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVP-SPGHRSGPPEPQRNRMPPPRP 174
Query: 166 --CSKDDG--GRFPPGPARTEITTHSRS-------------GPTGSQTRGNCGAA-GSGD 207
SK D P P + + H+R GPT GN G A G G
Sbjct: 175 DVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGS 234
Query: 208 PRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAV-LPERGGRALTT 266
R F+ R P R P P P P+ AV P
Sbjct: 235 IRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPV 294
Query: 267 PALARTPGSLAPSPPPSPNPRPAP 290
P+ R S PPP P RP P
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPGP 318
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 47.8 bits (112), Expect = 1e-05
Identities = 94/345 (27%), Positives = 119/345 (34%), Gaps = 72/345 (20%)
Query: 21 PGRGS------ASGLAAAASGRAASMTPSTASSM---EGPRSRWKDSSGS------AGEG 65
PGR S +S + +S + S +PS S EG ++ + SSGS G G
Sbjct: 248 PGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSG 307
Query: 66 AADCGTAGGGGERGAPAGGARGSGGGPP--PWRLRNEVSPKASPPRPTCSVCRK---SPS 120
GG G+R GG GS PP P V KA+ PT K SP
Sbjct: 308 WGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPR 367
Query: 121 GAEMDRAPRSGRFLGCAG------------PSCFSTGICEGHGRVSAAPARG-----SQP 163
A + R GR G AG S S G R AP RG S+
Sbjct: 368 SAPSSQG-RGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRA 426
Query: 164 RDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARF 223
R S GR PGP GP RG+ G R RP +
Sbjct: 427 RSSSDSGSGRGAPGP-----------GPEPGSERGHGGHGKRAKERPPRARPASTSPSPG 475
Query: 224 LQPRGCGREFSGPFPSR-PGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPP 282
R G E G SR PGP R + +P+ +R+ A P
Sbjct: 476 AHGRRGGPE--GKSSSRSPGPH-------------PRSWSSSRSPSKSRSRS--AEKRPH 518
Query: 283 SPNPRPAPSFFLRAGSHLVRKVSCGTRREIQEPGIRVRRATSSFA 327
SP+ P+P L K G R + R RR + S++
Sbjct: 519 SPSRSPSPKKPLSRD-----KDGEGRARHSEAEATRARRRSRSYS 558
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 47.4 bits (111), Expect = 2e-05
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 22 GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADC-----GTAGGGG 76
GRGS G + G ++ + S EG SR S G G C GTAGG G
Sbjct: 498 GRGSGGGQGSNGQGSSSHSSGGNQCSGEGQGSRGGQGSNGQGSGGNQCSRDGQGTAGGHG 557
Query: 77 ERGAPA-GGARGSGGGPPP 94
G GG GSGGG P
Sbjct: 558 SGGGQRPGGGHGSGGGQGP 576
Score = 32.0 bits (71), Expect = 0.78
Identities = 68/276 (24%), Positives = 89/276 (32%), Gaps = 62/276 (22%)
Query: 22 GRGSASGLAAAAS--GRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERG 79
GR S ++ AS R A E P + + SS +G G+ G GE G
Sbjct: 419 GRRSRRAVSVPASFFRRLAPSPARPRHPAEAPNNGARLSSEVSGSGS------GNFGEEG 472
Query: 80 APAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGP 139
P G G G + N G+ R G+ G
Sbjct: 473 NPQGKEDQEGSGGDYMPMNNW--------------------GSGNGRGSGGGQGSNGQGS 512
Query: 140 SCFSTG--ICEGHGRVS----AAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTG 193
S S+G C G G+ S + +GS CS+D G T G G
Sbjct: 513 SSHSSGGNQCSGEGQGSRGGQGSNGQGSGGNQCSRDGQG------------TAGGHGSGG 560
Query: 194 SQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYL 253
Q G G GSG G PG+G + G G+ G S G +
Sbjct: 561 GQRPG--GGHGSG----GGQGPGDGHGS------GGGKNSGGGKGSGSGKGSDGDGERGK 608
Query: 254 AVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPA 289
++ LT + P P PPP P P PA
Sbjct: 609 SLKKRSYFGKLTQSKQQQMP----PPPPPPPPPPPA 640
Score = 28.9 bits (63), Expect = 6.6
Identities = 51/214 (23%), Positives = 66/214 (30%), Gaps = 32/214 (14%)
Query: 49 EGPRSRWKDSSGSAGEGAADCGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPP 108
EG +D GS G+ G G RG+ GG +GS G + S S
Sbjct: 471 EGNPQGKEDQEGSGGD-YMPMNNWGSGNGRGS--GGGQGSNG---------QGSSSHSSG 518
Query: 109 RPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSK 168
CS + G + SG G C +G G + G Q
Sbjct: 519 GNQCSGEGQGSRGGQGSNGQGSG------GNQCSR----DGQGTAGGHGSGGGQRPGGGH 568
Query: 169 DDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRG 228
GG PG G G + G +GSG GD G+ R +
Sbjct: 569 GSGGGQGPGDGH---------GSGGGKNSGGGKGSGSGKGSDGDGERGKSLKKRSYFGK- 618
Query: 229 CGREFSGPFPSRPGPRTPVPTAPYLAVLPERGGR 262
+ P P P P P A + GGR
Sbjct: 619 LTQSKQQQMPPPPPPPPPPPPAGGTGGKGKSGGR 652
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 47.4 bits (111), Expect = 2e-05
Identities = 78/314 (24%), Positives = 105/314 (33%), Gaps = 82/314 (26%)
Query: 58 SSGSAGEGAADCGTAG--------GGGERGAPAGGARGSGGGPPPWRLRNEVSPKA---- 105
SS EG + TA GG RG+P+GG+ R ++S ++
Sbjct: 433 SSKGGSEGQPESSTASNSVVPPPQGGSGRGSPSGGSTAEASDTLSIRSSGQLSGRSVSLR 492
Query: 106 ------SPPRPTCSVCRKS---PSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAA 156
PPR T S+ ++ P G + P+ R P +TG EG G
Sbjct: 493 KLKRPPPPPRRTHSLHQRGLAVPDGP-LGLPPKPERKQQPQLPRPPTTGGSEGAGAAPCP 551
Query: 157 PARGSQPRDCSKDDGGRFPP-GPARTEITTHSRSGPTGSQTRGNCGAAG-------SGDP 208
P + G R PP P RT + S +G+ T G AG + P
Sbjct: 552 PNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQPP 611
Query: 209 R------------------------WGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGP- 243
+ DP P + + L P G R P P P P
Sbjct: 612 KPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLG-DRFVIPPHPKVPAPF 670
Query: 244 -------RTPVPTAPYLAVLPERGGRALTTPALARTPG-------------------SLA 277
R+P P AP LA G TT A ++P S
Sbjct: 671 SPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPP 730
Query: 278 PSPPPSPNPRPAPS 291
PSPPPS +P P P+
Sbjct: 731 PSPPPSYHPPPPPT 744
Score = 41.6 bits (96), Expect = 0.001
Identities = 78/306 (25%), Positives = 105/306 (34%), Gaps = 43/306 (14%)
Query: 22 GRGSASGLAAAASGRAASMTP--STASSMEGPRSRWKDSSGSAGEGA-ADCGTAGGGGER 78
G +G A A S P S S PRS + S S+G + + T G
Sbjct: 540 GGSEGAGAAPCPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLA 599
Query: 79 GAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRA------PRSGR 132
G PA + G P P R+ + SP AS S+C S A DR+ P R
Sbjct: 600 GPPA--SPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLGDR 657
Query: 133 FLGCAGPSC---FSTGICEGHGRVSAAPARGSQ---PRDCSKDDGGRFPPGPARTEITTH 186
F+ P FS + AAPA + P S D P +T +T
Sbjct: 658 FVIPPHPKVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPL 717
Query: 187 SRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPF--PSRPGPR 244
S P S+ + S P + P P ++ P P+ P P
Sbjct: 718 QES-PVISKDQS---PPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQDPNWPPPP 773
Query: 245 TPVPTAPYLAVL----PERGGRALTTPALARTPGS----------------LAPSPPPSP 284
P P L++ PE ++ +P A GS L PP SP
Sbjct: 774 PPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQPPGSP 833
Query: 285 NPRPAP 290
+P PAP
Sbjct: 834 DPPPAP 839
Score = 35.8 bits (81), Expect = 0.054
Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 23/142 (16%)
Query: 175 PPGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRP-----GEGFTARFLQ--PR 227
P GP+ + S + + S T GS DP P P G A+ Q P
Sbjct: 802 PAGPSGSPELVSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPV 861
Query: 228 GCGREFSGPFPSRPGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSP--- 284
GC + G P R P+ T L ++ R++ P A TP +L PS P P
Sbjct: 862 GCSK---GGGPPREDVGAPLVTPSLLQMVRL---RSVGAPGGAPTP-ALGPSAPQKPLRR 914
Query: 285 ------NPRPAPSFFLRAGSHL 300
+P PAPS L A L
Sbjct: 915 ALSGRASPVPAPSSGLHAAVRL 936
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 47.0 bits (110), Expect = 2e-05
Identities = 60/184 (32%), Positives = 68/184 (36%), Gaps = 33/184 (17%)
Query: 120 SGAEMDRA---PRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPP 176
SG RA P S L P F G+ + A P G +P G R PP
Sbjct: 6 SGRRQGRARGRPHSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEP-------GNRHPP 58
Query: 177 GPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRW----GDPRPGEGFTA-RFLQPRGCGR 231
PA +R+ P + R AAG W G R EG A R + R R
Sbjct: 59 PPA-------ARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWAR 111
Query: 232 EFSG----PFPSRPGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAP-SPPPSPNP 286
G P P R R P P P PER L LA P AP SP P+P
Sbjct: 112 RLPGSAAAPAPGRDALRLPPPPPPP----PERP--RLPPAGLAGGPADSAPPSPAPAPRS 165
Query: 287 RPAP 290
RPAP
Sbjct: 166 RPAP 169
Score = 31.2 bits (69), Expect = 1.3
Identities = 37/106 (34%), Positives = 39/106 (36%), Gaps = 23/106 (21%)
Query: 208 PRWGDPRPGEGFTARFLQPRGCGREFSG------PFPSRPGPRTPVPTAP--------YL 253
PR PRPGE R P R G P P+ G R P AP
Sbjct: 41 PRPAPPRPGEEPGNRH-PPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAA 99
Query: 254 AVLPERG---GRALTTPALARTPGS----LAPSPPPSP-NPRPAPS 291
A PER R L A A PG L P PPP P PR P+
Sbjct: 100 AARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPPPPERPRLPPA 145
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/233 (25%), Positives = 75/233 (32%), Gaps = 50/233 (21%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGA 80
PG G +AAA+G SM P S P S+ G + GA G GGGG G+
Sbjct: 203 PGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGS 262
Query: 81 PAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPS 140
GG G G + +GA A + G G
Sbjct: 263 GGGGGGGGAG------------------------AGGAGAGAVAAAAAAAAAAAGGGGGG 298
Query: 141 CFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNC 200
G+G SA S PR GG GP G S ++
Sbjct: 299 --------GYGGSSAGYGVLSSPR----QQGGGMMMGPG---------GGGAASLSKAAA 337
Query: 201 GAAGSGDPRW-GDPRPGEGFTARFLQ----PRGCGREFSGPFPSRPGPRTPVP 248
G+A G R+ G + G T Q P R + G +P P P P
Sbjct: 338 GSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPP 390
Score = 30.4 bits (67), Expect = 2.3
Identities = 65/269 (24%), Positives = 95/269 (35%), Gaps = 32/269 (11%)
Query: 17 GGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGG 76
GG G A +AAAA+ AA+ G + + S +G GGGG
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGG 328
Query: 77 ERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGC 136
A + GG + +N+ S PT + SPS M R+ G +
Sbjct: 329 AASLSKAAAGSAAGGFQRFAGQNQ---HPSGATPTLNQLLTSPS--PMMRS-YGGSYPEY 382
Query: 137 AGPSCFSTGICEGHGRVSAAPA-----RGSQPRDCSKDDGGRF---PPGPARTEITTHSR 188
+ PS + + +AA A + + KD G ++ P A + +H
Sbjct: 383 SSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPA 442
Query: 189 SGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVP 248
P T G G P DP + Q G G S P S+P +P P
Sbjct: 443 MSP---GTPGPTMGRSQGSPM--DP-----MVMKRPQLYGMG---SNPH-SQPQQSSPYP 488
Query: 249 TAPYLAVLPERGGRALTTPALARTPGSLA 277
Y P+R + RTPG++A
Sbjct: 489 GGSYGPPGPQRYPIGIQ----GRTPGAMA 513
Score = 30.0 bits (66), Expect = 3.0
Identities = 45/185 (24%), Positives = 62/185 (33%), Gaps = 34/185 (18%)
Query: 22 GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAP 81
G G +G A +G A+ + A++ G S SAG G GGG P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS-SAGYGVLSSPRQQGGGMMMGP 324
Query: 82 AGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSC 141
GG S L + A+ + + PSGA P + L P
Sbjct: 325 GGGGAAS--------LSKAAAGSAAGGFQRFAGQNQHPSGA----TPTLNQLLTSPSPMM 372
Query: 142 FSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCG 201
S G GS P S PP P++ + S++ G+ G
Sbjct: 373 RSYG--------------GSYPEYSSPSAP---PPPPSQPQ----SQAAAAGAAAGGQQA 411
Query: 202 AAGSG 206
AAG G
Sbjct: 412 AAGMG 416
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/233 (25%), Positives = 75/233 (32%), Gaps = 50/233 (21%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGA 80
PG G +AAA+G SM P S P S+ G + GA G GGGG G+
Sbjct: 203 PGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGS 262
Query: 81 PAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPS 140
GG G G + +GA A + G G
Sbjct: 263 GGGGGGGGAG------------------------AGGAGAGAVAAAAAAAAAAAGGGGGG 298
Query: 141 CFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNC 200
G+G SA S PR GG GP G S ++
Sbjct: 299 --------GYGGSSAGYGVLSSPR----QQGGGMMMGPG---------GGGAASLSKAAA 337
Query: 201 GAAGSGDPRW-GDPRPGEGFTARFLQ----PRGCGREFSGPFPSRPGPRTPVP 248
G+A G R+ G + G T Q P R + G +P P P P
Sbjct: 338 GSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPP 390
Score = 31.2 bits (69), Expect = 1.3
Identities = 67/280 (23%), Positives = 97/280 (34%), Gaps = 32/280 (11%)
Query: 17 GGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGG 76
GG G A +AAAA+ AA+ G + + S +G GGGG
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGG 328
Query: 77 ERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGC 136
A + GG + +N+ S PT + SPS M R+ G +
Sbjct: 329 AASLSKAAAGSAAGGFQRFAGQNQ---HPSGATPTLNQLLTSPS--PMMRS-YGGSYPEY 382
Query: 137 AGPSCFSTGICEGHGRVSAAPA-----RGSQPRDCSKDDGGRF---PPGPARTEITTHSR 188
+ PS + + +AA A + + KD G ++ P A + +H
Sbjct: 383 SSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPA 442
Query: 189 SGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVP 248
P T G G P DP + Q G G S P S+P +P P
Sbjct: 443 MSP---GTPGPTMGRSQGSPM--DP-----MVMKRPQLYGMG---SNPH-SQPQQSSPYP 488
Query: 249 TAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRP 288
Y P+R + RTPG++A P P
Sbjct: 489 GGSYGPPGPQRYPIGIQ----GRTPGAMAGMQYPQQQMPP 524
Score = 30.0 bits (66), Expect = 3.0
Identities = 45/185 (24%), Positives = 62/185 (33%), Gaps = 34/185 (18%)
Query: 22 GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAP 81
G G +G A +G A+ + A++ G S SAG G GGG P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS-SAGYGVLSSPRQQGGGMMMGP 324
Query: 82 AGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSC 141
GG S L + A+ + + PSGA P + L P
Sbjct: 325 GGGGAAS--------LSKAAAGSAAGGFQRFAGQNQHPSGA----TPTLNQLLTSPSPMM 372
Query: 142 FSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCG 201
S G GS P S PP P++ + S++ G+ G
Sbjct: 373 RSYG--------------GSYPEYSSPSAP---PPPPSQPQ----SQAAAAGAAAGGQQA 411
Query: 202 AAGSG 206
AAG G
Sbjct: 412 AAGMG 416
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/233 (25%), Positives = 75/233 (32%), Gaps = 50/233 (21%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGA 80
PG G +AAA+G SM P S P S+ G + GA G GGGG G+
Sbjct: 203 PGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGS 262
Query: 81 PAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPS 140
GG G G + +GA A + G G
Sbjct: 263 GGGGGGGGAG------------------------AGGAGAGAVAAAAAAAAAAAGGGGGG 298
Query: 141 CFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNC 200
G+G SA S PR GG GP G S ++
Sbjct: 299 --------GYGGSSAGYGVLSSPR----QQGGGMMMGPG---------GGGAASLSKAAA 337
Query: 201 GAAGSGDPRW-GDPRPGEGFTARFLQ----PRGCGREFSGPFPSRPGPRTPVP 248
G+A G R+ G + G T Q P R + G +P P P P
Sbjct: 338 GSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPP 390
Score = 31.2 bits (69), Expect = 1.3
Identities = 67/280 (23%), Positives = 97/280 (34%), Gaps = 32/280 (11%)
Query: 17 GGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGG 76
GG G A +AAAA+ AA+ G + + S +G GGGG
Sbjct: 269 GGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGG 328
Query: 77 ERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGC 136
A + GG + +N+ S PT + SPS M R+ G +
Sbjct: 329 AASLSKAAAGSAAGGFQRFAGQNQ---HPSGATPTLNQLLTSPS--PMMRS-YGGSYPEY 382
Query: 137 AGPSCFSTGICEGHGRVSAAPA-----RGSQPRDCSKDDGGRF---PPGPARTEITTHSR 188
+ PS + + +AA A + + KD G ++ P A + +H
Sbjct: 383 SSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPA 442
Query: 189 SGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVP 248
P T G G P DP + Q G G S P S+P +P P
Sbjct: 443 MSP---GTPGPTMGRSQGSPM--DP-----MVMKRPQLYGMG---SNPH-SQPQQSSPYP 488
Query: 249 TAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRP 288
Y P+R + RTPG++A P P
Sbjct: 489 GGSYGPPGPQRYPIGIQ----GRTPGAMAGMQYPQQQMPP 524
Score = 30.0 bits (66), Expect = 3.0
Identities = 45/185 (24%), Positives = 62/185 (33%), Gaps = 34/185 (18%)
Query: 22 GRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGAP 81
G G +G A +G A+ + A++ G S SAG G GGG P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS-SAGYGVLSSPRQQGGGMMMGP 324
Query: 82 AGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSC 141
GG S L + A+ + + PSGA P + L P
Sbjct: 325 GGGGAAS--------LSKAAAGSAAGGFQRFAGQNQHPSGA----TPTLNQLLTSPSPMM 372
Query: 142 FSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCG 201
S G GS P S PP P++ + S++ G+ G
Sbjct: 373 RSYG--------------GSYPEYSSPSAP---PPPPSQPQ----SQAAAAGAAAGGQQA 411
Query: 202 AAGSG 206
AAG G
Sbjct: 412 AAGMG 416
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 19/124 (15%)
Query: 186 HSRSGPTGSQTRG-NCGAAGSGDPRWGDPRP--GEGFTARF--LQPRGC-----GREFSG 235
+ RS P ++G N GS + R P G+ F F L+P G G+ G
Sbjct: 66 NDRSAPQIESSKGTNKEGGGSANTRGASTPPTLGDLFAGGFPVLRPAGQRDVAGGKTGQG 125
Query: 236 PFPSRPGPRTP---------VPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPSPNP 286
P P PR P P +P L E G A T P P P+PPP P P
Sbjct: 126 PGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPP 185
Query: 287 RPAP 290
P P
Sbjct: 186 LPPP 189
Score = 33.1 bits (74), Expect = 0.35
Identities = 59/254 (23%), Positives = 80/254 (31%), Gaps = 72/254 (28%)
Query: 92 PPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHG 151
PPP L P +PP P S S + + RA GR S I +G
Sbjct: 6 PPPPPLPPPPPPLGAPPPPPPSAPPVSTDTSSLRRADPKGR-------SALLADIQQGTR 58
Query: 152 --RVSAAPARGSQPRDCSKD---DGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAG-- 204
+V+ R + + SK +GG G A T G + T G+ A G
Sbjct: 59 LRKVTQINDRSAPQIESSKGTNKEGG----GSANTR-------GASTPPTLGDLFAGGFP 107
Query: 205 ----SGDPRWGDPRPGEGFTARFLQPRGCGREFSGPF----------------------- 237
+G + G+G +R PR + SGP
Sbjct: 108 VLRPAGQRDVAGGKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPP 167
Query: 238 ----PSRPGPRTPVPTAPYLAVLPE----------------RGGRALTTPALARTPGSLA 277
P+ P P P P P LP +G + P + P
Sbjct: 168 RPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPP 227
Query: 278 PSPPPSPNPRPAPS 291
P PPP+P P P S
Sbjct: 228 PPPPPTPPPLPPAS 241
Score = 30.0 bits (66), Expect = 3.0
Identities = 62/266 (23%), Positives = 85/266 (31%), Gaps = 44/266 (16%)
Query: 36 RAASMTPSTASSMEGPRSRWKDSSGSAG-EGAADCGTAGGGGERGAP----------AGG 84
+ + +A +E + K+ GSA GA+ T G G P AGG
Sbjct: 61 KVTQINDRSAPQIESSKGTNKEGGGSANTRGASTPPTLGDLFAGGFPVLRPAGQRDVAGG 120
Query: 85 ARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFST 144
G G G S SP P ++ SG + A P +T
Sbjct: 121 KTGQGPG----------SRAPSPRLPNKTI---------------SGPLIPPASPRLGNT 155
Query: 145 GICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRS---GPTGSQTRGNCG 201
E HG AP R + P PP P ++ ++ P G T+GN
Sbjct: 156 S--EAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLP 213
Query: 202 AAGSGDP-RWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAVLPERG 260
P P P T L P + + P P+P P L +LP G
Sbjct: 214 VVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIP--PPLPLLPPCG 271
Query: 261 GRALTTPALARTPGSLAPSPPPSPNP 286
L + + P PP P P
Sbjct: 272 YPGLKAEPASPAQDAQEPPAPPPPLP 297
Score = 29.3 bits (64), Expect = 5.1
Identities = 42/151 (27%), Positives = 56/151 (37%), Gaps = 22/151 (14%)
Query: 69 CGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAP 128
CG G E +PA A+ PPP SP+AS P P S S P
Sbjct: 270 CGYPGLKAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAPPLPGVNSS-SETPPPLPP 328
Query: 129 RSGRFLGCAGPSCFSTGICEGHGRVSAAPA-RGSQPRDCSK------DDGGRFPPGPA-- 179
+S PS + G + A PA GSQP K GG+ P PA
Sbjct: 329 KS--------PSFQAPPQKAGAQALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAPP 380
Query: 180 ----RTEITTHSRSGPTGSQTRGNCGAAGSG 206
TE+++ S+ + T+ G +G
Sbjct: 381 ARSPTTELSSKSQQATAWTPTQQPGGQLRNG 411
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 46.2 bits (108), Expect = 4e-05
Identities = 74/278 (26%), Positives = 85/278 (30%), Gaps = 73/278 (26%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADCGTAGGGGERGA 80
PG GLA A R + P GP G+AG G AG G +G
Sbjct: 680 PGERGPPGLAGAPGLRGGAGPP-------GPEG----GKGAAGPPGPP-GAAGTPGLQGM 727
Query: 81 PAGGARGSGGGPPPWRLRNE--------VSPKASPPRPTCSVCRKSPSGAEMDRAPRSGR 132
P G RG G P P + E V K P PT + P+G D+
Sbjct: 728 P--GERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDK------ 779
Query: 133 FLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPT 192
G G P PR + G PPGPA P
Sbjct: 780 ----------------GEGGAPGLPGIAG-PRGSPGERGETGPPGPAGFPGAPGQNGEPG 822
Query: 193 GSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPY 252
G RG G G G P PG G +GP PGP+
Sbjct: 823 GKGERGAPGEKGEGGPPGVAGPPG-------------GSGPAGP----PGPQ-------- 857
Query: 253 LAVLPERGGRALTTPALARTPGSLAPSPPPSPNPRPAP 290
V ERG P A PG+ PP N P P
Sbjct: 858 -GVKGERGSPG--GPGAAGFPGARGLPGPPGSNGNPGP 892
Score = 42.4 bits (98), Expect = 6e-04
Identities = 77/281 (27%), Positives = 91/281 (32%), Gaps = 53/281 (18%)
Query: 21 PGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSS-----GSAGEGAADCGTAGGG 75
PG A+G A G A + A GPR ++ G+ GE D G+ G
Sbjct: 416 PGPAGANG-APGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKD-GSPGEP 473
Query: 76 GERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLG 135
G G P GA G G P R P P K P+G P R G
Sbjct: 474 GANGLP--GAAGERGAPG---FRGPAGPNGIPGE-------KGPAGERGAPGPAGPR--G 519
Query: 136 CAGPSCFSTGICEGHGRVSAAPARGSQPRDCSK--DDGGRFPPGPARTEITTHSRSGPTG 193
AG G V P P DG PPG R GP G
Sbjct: 520 AAGEP--------GRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGES----GRPGPPG 567
Query: 194 -SQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPR-TPVPTAP 251
S RG G G P+ D PG+ P G G + GP+ P PT P
Sbjct: 568 PSGPRGQPGVMGFPGPKGNDGAPGK--NGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625
Query: 252 YLAVLPERGGRALTTP----ALARTPGSLAPSPPPSPNPRP 288
G + T P L PG+ PP N +P
Sbjct: 626 -------GGDKGDTGPPGPQGLQGLPGT---GGPPGENGKP 656
Score = 40.0 bits (92), Expect = 0.003
Identities = 78/314 (24%), Positives = 103/314 (32%), Gaps = 83/314 (26%)
Query: 21 PGRGSASGLAAA--------ASGRAASMTPSTASSMEGPRSRWKDSSGSAGEGAADC-GT 71
PG A+G A ++G PS + +GP ++ G + G
Sbjct: 866 PGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGD 925
Query: 72 AGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSP------------ 119
AG GE+G+P GA+G G P P + + P R SP
Sbjct: 926 AGQPGEKGSP--GAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKP 983
Query: 120 --SGAEMDRAPRSGRFL----GCAGP-----SCFSTGICEGHGRVSAAPARGSQ------ 162
+G +R P + L G AG + S G+ G RG
Sbjct: 984 GANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAP 1043
Query: 163 -------------PRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPR 209
P S D G P GPA GP GS+ GA G PR
Sbjct: 1044 GAPGHPGPPGPVGPAGKSGDRGESGPAGPA-------GAPGPAGSR-----GAPGPQGPR 1091
Query: 210 WGDPRPGEGFTARFLQPRGCGREFSGPFPSRPG-PRTPVPTAPYLAVLPERGGRALTTPA 268
GE A RG FP PG P +P P ++G A+ +P
Sbjct: 1092 GDKGETGERGAAGIKGHRG--------FPGNPGAPGSPGPAG-------QQG--AIGSPG 1134
Query: 269 LARTPGSLAPSPPP 282
A G + PS PP
Sbjct: 1135 PAGPRGPVGPSGPP 1148
Score = 38.5 bits (88), Expect = 0.008
Identities = 79/298 (26%), Positives = 100/298 (33%), Gaps = 55/298 (18%)
Query: 21 PGRGSASGL--AAAASGRAASMTPSTASSMEGP--RSRWKDSSGSAGE--GAADCGTAGG 74
PG GL AA A G + GP + + S G+ GE A G+ G
Sbjct: 305 PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGA 364
Query: 75 GGERGAPA-GGARGSGGGPPPWRL------RNEVSPKASPPRPTCSVCRKSPSGAEMDRA 127
G+RG P G G+ G P P + + E+ P P P R P A + A
Sbjct: 365 PGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGA 424
Query: 128 PRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQ-PRDCSKDDGGRFPPGPARTEITTH 186
P G+ G G A+G PR + G PG A+ E
Sbjct: 425 P----------------GLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPG-AKGEDGKD 467
Query: 187 SRSGPTGSQTRGNCGAAGS-GDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRP---- 241
G G+ G GAAG G P + P G +G E P P+ P
Sbjct: 468 GSPGEPGA--NGLPGAAGERGAPGFRGPAGPNGIPGE----KGPAGERGAPGPAGPRGAA 521
Query: 242 --GPRTPVPTAPYLAVLPERGGRALTTPALARTPG-------SLAPSPPPSPNPRPAP 290
R VP P + +P G P PG S P PP PR P
Sbjct: 522 GEPGRDGVPGGPGMRGMPGSPG----GPGSDGKPGPPGSQGESGRPGPPGPSGPRGQP 575
Score = 37.7 bits (86), Expect = 0.014
Identities = 83/314 (26%), Positives = 99/314 (31%), Gaps = 57/314 (18%)
Query: 22 GRGSASGLAAAAS-----GRAASMTPSTASSMEGPRSRWKDSSGSAGEGA-ADCGTAGGG 75
G G A GL A G P + G + + G GA + G G
Sbjct: 780 GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP 839
Query: 76 GERGAPAG-------------GARGSGGGPPPWRL---RNEVSPKAS-----PPRPTCSV 114
G G P G G RGS GGP R P S PP P+ S
Sbjct: 840 GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899
Query: 115 CRKSPSG-AEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGR 173
+ P G A AP S G +GP + E + P P + G R
Sbjct: 900 GKDGPPGPAGNTGAPGSP---GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR 956
Query: 174 ---FPPG-------PARTEITTHS----------RSGPTGSQTRGNCGAAGSGDPRWGDP 213
PPG P + S GP G Q G G AG+ D
Sbjct: 957 GLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQ--GLPGLAGTAGEPGRDG 1014
Query: 214 RPG-EGFTARFLQPRGCGREFSGPFPSRPG-PRTPVPTAPYLAVLPERGGRALTTPA-LA 270
PG +G R P G G P PG P P P P + + G R + PA A
Sbjct: 1015 NPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGP-VGPAGKSGDRGESGPAGPA 1073
Query: 271 RTPGSLAPSPPPSP 284
PG P P
Sbjct: 1074 GAPGPAGSRGAPGP 1087
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 45.8 bits (107), Expect = 5e-05
Identities = 56/192 (29%), Positives = 73/192 (38%), Gaps = 33/192 (17%)
Query: 98 RNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCF--STGICEGHGRVSA 155
R +SP PP P P+G E P+S R +G S GI E
Sbjct: 516 RKHISPAFQPPLPPTDGSTVVPAGPEPP--PQSSRAESSSGGGTVPSSAGILEQ----GP 569
Query: 156 APARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRP 215
+P GS P+ KD P P R + SG Q AAGS G P
Sbjct: 570 SPGDGSPPKP--KDPVSAAVPAPGRNN--SQIASGQNQPQA-----AAGSHQLSMGQPHN 620
Query: 216 GEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAVLPERGGRALTTPALARTPGS 275
G + L+ R P P+ P P P P P GG++ + ++ P S
Sbjct: 621 AAGPSPHTLR-----RAVKKPAPAPPKPGNPPPGHP--------GGQS--SSGTSQHPPS 665
Query: 276 LAPSPPP-SPNP 286
L+P PP SP+P
Sbjct: 666 LSPKPPTRSPSP 677
Score = 32.0 bits (71), Expect = 0.78
Identities = 69/288 (23%), Positives = 91/288 (31%), Gaps = 56/288 (19%)
Query: 32 AASGRAASMTPSTASSMEG---------PRSRWKDSSGSAGEGAADCGTAGGGGERGAPA 82
A S PS+A +E P+ + S+ G + A G + A A
Sbjct: 549 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPKDPVSAAVPAPGRNNSQIASGQNQPQAAA 608
Query: 83 GGARGSGG------GPPPWRLRNEVS-PKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLG 135
G + S G GP P LR V P +PP+P + P G + L
Sbjct: 609 GSHQLSMGQPHNAAGPSPHTLRRAVKKPAPAPPKPG-NPPPGHPGGQSSSGTSQHPPSLS 667
Query: 136 CAGPSCFSTGICEGHGRVSAAPARGSQ---PRDCSKD----DGGRFPPGPARTEITTHSR 188
P+ + + G+ P+ SQ PR S PP T+ T
Sbjct: 668 PKPPTRSPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMH 727
Query: 189 SGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVP 248
+ P G P P P G E PS P+TP P
Sbjct: 728 TKPNSQ----------------GPPNP-------MALPSEHGLEQ----PSHTPPQTPTP 760
Query: 249 -TAPYLAV----LPERGGRALTTPALARTPGSLAPSPPPSPNPRPAPS 291
+ P L LP A P A+ P P P P PR PS
Sbjct: 761 PSTPPLGKQNPSLPAPQTLAGGNPETAQPHAGTLPRPRPVPKPRNRPS 808
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 45.8 bits (107), Expect = 5e-05
Identities = 67/260 (25%), Positives = 101/260 (38%), Gaps = 59/260 (22%)
Query: 68 DCGTAGGGGERGAPAGGARGSGGGP--PPWRLRNEVSPKASPPRPTCSV-----CRKSPS 120
+CG GG G GGA + G W+L ++ SP+ P CS CR S +
Sbjct: 204 ECGGPGGSGS----GGGASDTSGFSFDQEWKLSSDESPR----NPGCSGSGDQHCRCSST 255
Query: 121 GAEMDRAPRSGRFLGCAGPSC---------FSTGICEGHG----RVSAAPARGSQPRDCS 167
++ + A +S ++ + SC FST + HG +++AP S CS
Sbjct: 256 SSQSEAADQSMGYV--SDSSCNSSDGVLVTFSTLYNKMHGTPRANLNSAPQSCSDSSFCS 313
Query: 168 KDDGGRF----PPGPARTEITTHSRSGPTGSQTRG-NCGAAGSG--DPRWGDPRPGEGFT 220
D G F P P ++++ S +G + G C A S D RP
Sbjct: 314 HSDPGAFYLDLQPSPFESKMSYESHHPESGGREGGYGCPHASSPELDANCNSYRP----- 368
Query: 221 ARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAVL---------PERGGRALTTPALAR 271
+P + + F S+ R V T Y ++ P G ++T+ +
Sbjct: 369 --HCEPCPAVADLTACFQSQA--RLVVATQNYYKLVTCDLSSQSSPSPAGSSITSCSEEH 424
Query: 272 TPGSLAPSPPPSPNPRPAPS 291
T SPPP P P P PS
Sbjct: 425 TK----ISPPPGPGPDPGPS 440
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,507,858
Number of Sequences: 37866
Number of extensions: 1507002
Number of successful extensions: 18763
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 1307
Number of HSP's that attempted gapping in prelim test: 10479
Number of HSP's gapped (non-prelim): 6698
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.