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Search of human proteins with 239751818
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751818 PREDICTED: hypothetical protein XP_002348008 [Homo
sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751818 PREDICTED: hypothetical protein XP_002348008 [Homo ... 399 e-111
gi|239746309 PREDICTED: hypothetical protein XP_002343728 [Homo ... 399 e-111
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 45 4e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 42 3e-04
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 40 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.001
gi|239747595 PREDICTED: hypothetical protein XP_002347777 [Homo ... 40 0.002
gi|239741460 PREDICTED: hypothetical protein XP_002342225 [Homo ... 40 0.002
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 39 0.002
gi|126352608 elastin isoform e precursor [Homo sapiens] 38 0.005
gi|126352700 elastin isoform b precursor [Homo sapiens] 38 0.005
gi|126352440 elastin isoform a precursor [Homo sapiens] 38 0.005
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 38 0.005
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 38 0.005
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 38 0.005
gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ... 37 0.008
gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ... 37 0.008
gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a... 37 0.014
gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b... 37 0.014
gi|126352446 elastin isoform d precursor [Homo sapiens] 37 0.014
gi|126352322 elastin isoform c precursor [Homo sapiens] 37 0.014
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 36 0.018
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 36 0.018
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 36 0.024
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 35 0.031
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 35 0.031
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 35 0.031
gi|22538470 eomesodermin [Homo sapiens] 35 0.040
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 35 0.040
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 35 0.040
>gi|239751818 PREDICTED: hypothetical protein XP_002348008 [Homo
sapiens]
Length = 195
Score = 399 bits (1024), Expect = e-111
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MAFISSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIP 60
MAFISSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIP
Sbjct: 1 MAFISSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIP 60
Query: 61 HKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP 120
HKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP
Sbjct: 61 HKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP 120
Query: 121 GAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRA 180
GAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRA
Sbjct: 121 GAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRA 180
Query: 181 LKGPRAPPGEGVEGA 195
LKGPRAPPGEGVEGA
Sbjct: 181 LKGPRAPPGEGVEGA 195
>gi|239746309 PREDICTED: hypothetical protein XP_002343728 [Homo
sapiens]
Length = 195
Score = 399 bits (1024), Expect = e-111
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MAFISSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIP 60
MAFISSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIP
Sbjct: 1 MAFISSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIP 60
Query: 61 HKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP 120
HKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP
Sbjct: 61 HKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP 120
Query: 121 GAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRA 180
GAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRA
Sbjct: 121 GAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRA 180
Query: 181 LKGPRAPPGEGVEGA 195
LKGPRAPPGEGVEGA
Sbjct: 181 LKGPRAPPGEGVEGA 195
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 45.1 bits (105), Expect = 4e-05
Identities = 48/148 (32%), Positives = 57/148 (38%), Gaps = 23/148 (15%)
Query: 64 PGPVLPGEGVQGVV-LPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSPGA 122
PGPV PG G G L + GPP G L G+S E G RG P
Sbjct: 257 PGPV-PGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDS-----EGGVNRGIGPSR 310
Query: 123 ASLRRSDERFLQQ--KGDAASAPQRAPLAGGGYSVTLTT-VLLFVTF------------- 166
SL D++ L +G AA P R P GG S+TL + TF
Sbjct: 311 VSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAVPRAR 370
Query: 167 RSKIPLPAPTMPRALKGPRAPPGEGVEG 194
RS LP P+ PR P P + G
Sbjct: 371 RSANRLPRPSGPRPRPAPARSPSQSPAG 398
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 42.4 bits (98), Expect = 3e-04
Identities = 57/188 (30%), Positives = 64/188 (34%), Gaps = 44/188 (23%)
Query: 9 PPPPLRPLSALGAVGPPEASSCWRNLKGAGALG-AGLLAFQPNDTAGSPGLIPHKSPGPV 67
PP P PL G GPP L G G G + G G+ P + P
Sbjct: 1375 PPGPRGPLGDPGPRGPP-------GLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPG 1427
Query: 68 LPGE-GVQGVVLPLLRALQLGPPKGANLGVGGDLEEGE-----SPASWGECGPGRGGSPG 121
LPG G QG V GPP G GD E+G P S GE GP G PG
Sbjct: 1428 LPGSPGPQGPV---------GPP--GKKGEKGDSEDGAPGLPGQPGSPGEQGP--RGPPG 1474
Query: 122 AASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRAL 181
A + D F G+A +R P G LP
Sbjct: 1475 AIG-PKGDRGFPGPLGEAGEKGERGPPGPAG----------------SRGLPGVAGRPGA 1517
Query: 182 KGPRAPPG 189
KGP PPG
Sbjct: 1518 KGPEGPPG 1525
Score = 32.0 bits (71), Expect = 0.34
Identities = 44/125 (35%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKG-AGALGAGLLAFQPNDTAGSPGLIPHKS-PGPV 67
P PL P G+VGPP AS LKG G G GL P G PG+ PG
Sbjct: 2436 PGPLGPPGPPGSVGPPGAS----GLKGDKGDPGVGLPG--PRGERGEPGIRGEDGRPGQ- 2488
Query: 68 LPGEGVQGVVLPLLRALQLGPPKG--ANLGVGGDLEEGESPASWGECGP-GRGGSPGAAS 124
EG +G+ P + G KG + G+ GD +G+S G GP G G G
Sbjct: 2489 ---EGPRGLTGPPGSRGERG-EKGDVGSAGLKGD--KGDSAVILGPPGPRGAKGDMGERG 2542
Query: 125 LRRSD 129
R D
Sbjct: 2543 PRGLD 2547
Score = 29.6 bits (65), Expect = 1.7
Identities = 57/193 (29%), Positives = 70/193 (36%), Gaps = 69/193 (35%)
Query: 19 LGAVGPPEASSCWRNLKGA-GALGAGLLAFQPNDTA-----GSPGLIPHKSP--GPVLPG 70
+G +GP R LKG G GA L + D G PGL HK P +PG
Sbjct: 2616 VGFMGP-------RGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPG 2668
Query: 71 E----GVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECG-PGRGGSPGAASL 125
+ G +G++ P G P G GD +GE GE G PG GG PG +
Sbjct: 2669 QSGAPGKEGLIGPKGDRGFDGQP-----GPKGD--QGEK----GERGTPGIGGFPGPSG- 2716
Query: 126 RRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRAL---K 182
D ++ P P + G P P L K
Sbjct: 2717 -----------NDGSAGPPGPPGSVG-----------------------PRGPEGLQGQK 2742
Query: 183 GPRAPPGEGVEGA 195
G R PPGE V GA
Sbjct: 2743 GERGPPGERVVGA 2755
Score = 28.9 bits (63), Expect = 2.9
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 49 PNDTAGSPGLIPHKSPGPVLPGEGVQGVVLPLLRALQLGPP----KGANLGVGGDLEEGE 104
P G+PG++ + P P LPG +GPP G G G + GE
Sbjct: 1873 PKGERGAPGILGPQGP-PGLPGP--------------VGPPGQGFPGVPGGTGPKGDRGE 1917
Query: 105 SPASWGECG-PGRGGSPGAASLRRSDERFLQQKGDAASA 142
+ S GE G PG G G + +R L+ G ASA
Sbjct: 1918 T-GSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASA 1955
Score = 28.1 bits (61), Expect = 4.9
Identities = 37/132 (28%), Positives = 48/132 (36%), Gaps = 26/132 (19%)
Query: 60 PHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECG-PGRGG 118
P P PV +G +G + Q+GPP GD P G G PG G
Sbjct: 1242 PRPEPCPVYCPKGQKGEPGEMGLRGQVGPP--------GD------PGLPGRTGAPGPQG 1287
Query: 119 SPGAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMP 178
PG+A+ + ER +P RA G + L + LP P
Sbjct: 1288 PPGSATAK--GERGFPGADGRPGSPGRAGNPGTPGAPGL---------KGSPGLPGPRGD 1336
Query: 179 RALKGPRAPPGE 190
+GPR P GE
Sbjct: 1337 PGERGPRGPKGE 1348
Score = 27.7 bits (60), Expect = 6.5
Identities = 42/149 (28%), Positives = 52/149 (34%), Gaps = 42/149 (28%)
Query: 49 PNDTAGSPGLIPHKSPG-PVLPG-EGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESP 106
PN AG G PG LPG G QG+ P GPP G+ G E P
Sbjct: 1795 PNGAAGKAG-----DPGRDGLPGLRGEQGLPGPS------GPP-----GLPGKPGEDGKP 1838
Query: 107 ASWGECG-PGRGGSPGAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVT 165
G+ G PG G G +KGD+ ++ + G
Sbjct: 1839 GLNGKNGEPGDPGEDGRKG----------EKGDSGASGREGRDGPKGE------------ 1876
Query: 166 FRSKIPLPAPTMPRALKGPRAPPGEGVEG 194
R + P P L GP PPG+G G
Sbjct: 1877 -RGAPGILGPQGPPGLPGPVGPPGQGFPG 1904
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 40.4 bits (93), Expect = 0.001
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 24/111 (21%)
Query: 9 PPPPLRP-----LSALGAVGPPEASSCWRN--LKGAGALGA----GLLAFQPNDTAGSPG 57
P PPL P +ALGA PP L+G G G G AF+P AG
Sbjct: 10 PLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAA 69
Query: 58 LI--PHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESP 106
P SPG +P G LQ+GPP G+ G L G P
Sbjct: 70 QYQRPGMSPGNRMPMAG-----------LQVGPPAGSPFGAAAPLRPGMPP 109
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.0 bits (92), Expect = 0.001
Identities = 48/195 (24%), Positives = 65/195 (33%), Gaps = 48/195 (24%)
Query: 8 SPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKSPGPV 67
+P PP P A A PP LA P AG P + P
Sbjct: 254 APSPPAAPAPAAPAAAPPPPPPA-----------PATLARPPGHPAGPP------TAAPA 296
Query: 68 LPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSPGAASL-- 125
+P PP A G +PA+ G G PGAA+
Sbjct: 297 VP------------------PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAP 338
Query: 126 -----RRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAPTMPRA 180
S +R +Q A+ P LA G + T ++++ T + +P PA P A
Sbjct: 339 APGVKAESPKRVVQ-----AAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPA 393
Query: 181 LKGPRAPPGEGVEGA 195
P P +G GA
Sbjct: 394 PGTPTGLP-KGAAGA 407
Score = 35.0 bits (79), Expect = 0.040
Identities = 56/192 (29%), Positives = 63/192 (32%), Gaps = 45/192 (23%)
Query: 9 PPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKSP-GPV 67
PP P RPL G PP A L+ AG A P A + G P +P GP
Sbjct: 107 PPSPRRPLVPAGPA-PPAAK-----LRPPPEGSAGSCAPVPAAAAVAAG--PEPAPAGPA 158
Query: 68 LPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSPGAASLRR 127
P P A + GP G G G P GPG+ PGAA
Sbjct: 159 KPAG-------PAALAARAGPGPGPGPG------PGPGP------GPGKPAGPGAAQTLN 199
Query: 128 SDERFLQ------------QKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPLPAP 175
L G AA P P A G T+ FV + P PA
Sbjct: 200 GSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPG----TVIQTPPFVGAAAP-PAPAA 254
Query: 176 TMPRALKGPRAP 187
P A P AP
Sbjct: 255 PSPPAAPAPAAP 266
>gi|239747595 PREDICTED: hypothetical protein XP_002347777 [Homo
sapiens]
Length = 98
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 54 GSPGLIPHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECG 113
G PGL G VL G GV L +LG G L G +P WG+CG
Sbjct: 9 GDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLW-------GTAPREWGKCG 61
Query: 114 PGRGGSP 120
PG G P
Sbjct: 62 PGPLGPP 68
>gi|239741460 PREDICTED: hypothetical protein XP_002342225 [Homo
sapiens]
Length = 98
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 54 GSPGLIPHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECG 113
G PGL G VL G GV L +LG G L G +P WG+CG
Sbjct: 9 GDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLW-------GTAPREWGKCG 61
Query: 114 PGRGGSP 120
PG G P
Sbjct: 62 PGPLGPP 68
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/77 (38%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 7 MSPPPPLRPLSALGAV---GPPEASS--CWRNLKGAGALGAGLLAFQPNDTAGS------ 55
+ PPPP P SA A+ GPPE SS N GA + G G PN +
Sbjct: 306 LPPPPPPAPGSAPPALPPEGPPEDSSQDLAPNSVGAASTGGGTGGTHPNTPTATTANNPL 365
Query: 56 -PGLIPHKSPGPVLPGE 71
PG P +PGP L GE
Sbjct: 366 PPGGDPSSAPGPALLGE 382
Score = 32.0 bits (71), Expect = 0.34
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 5 SSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKSP 64
S M P PP R GA+ P G G G GL P+ A P +P++ P
Sbjct: 1223 SQMMPFPP-RLQQPHGAMAPT----------GGGGGGPGLQQHYPSGMALPPEDLPNQPP 1271
Query: 65 GPVLPGEGVQGVVLPLLRALQLGP--PKGANLGVGGDLEEGE 104
GP+ P + + G + A ++G P G GV L + E
Sbjct: 1272 GPMPPQQHLMGKAM----AGRMGDAYPPGVLPGVASVLNDPE 1309
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 38.1 bits (87), Expect = 0.005
Identities = 49/154 (31%), Positives = 56/154 (36%), Gaps = 41/154 (26%)
Query: 18 ALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAG-SPGLIPHKS-----PGPVLPGE 71
A A +A + + G G LG A P AG PG +P PG VLPG
Sbjct: 99 AAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGA 158
Query: 72 GVQGV-VLPLLRALQLGPPKGANL-----GVGGDLEEGESPASWGECGPGRGGSPGAASL 125
GV VLP G P GA + GVGG A G G G G P
Sbjct: 159 RFPGVGVLP-------GVPTGAGVKPKAPGVGG--------AFAGIPGVGPFGGP----- 198
Query: 126 RRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTT 159
Q G P +AP GGY + TT
Sbjct: 199 ---------QPGVPLGYPIKAPKLPGGYGLPYTT 223
Score = 36.6 bits (83), Expect = 0.014
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 23/137 (16%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKGAGALGA--GLLAFQPNDTAGSPGLIPHKSPG-- 65
P + + + VG P A++ A GA GL+ P G G+ PG
Sbjct: 286 PGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVG 345
Query: 66 ------PVLPGEGVQGVVLP-----------LLRALQLGPPKGANLGVGGDLEEGESPAS 108
PV+PG G+ G +P +A + G G +GVGG G
Sbjct: 346 VPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPG--VGVGGIPTYGVGAGG 403
Query: 109 WGECGPGRGGSPGAASL 125
+ G G GG PG A +
Sbjct: 404 FPGFGVGVGGIPGVAGV 420
Score = 32.3 bits (72), Expect = 0.26
Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 23/135 (17%)
Query: 38 GALGAGLLAFQPNDTAGSPGLIPHKSPGPVL-PGEGV----QGVVLPLLRALQLGPP--K 90
G L L P+ G PG IP PG V PG G+ G + P + L+ P
Sbjct: 12 GVLLLLLSILHPSRPGGVPGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLA 71
Query: 91 GANLGVG---------------GDLEEGESPASWGECGPGRGGSPGAASLRRSDERFLQQ 135
GA LG G G + + + + G G GG PG L S + Q
Sbjct: 72 GAGLGAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQ 131
Query: 136 KGDAASAPQRAPLAG 150
G A P + P G
Sbjct: 132 PG-AGVKPGKVPGVG 145
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 38.1 bits (87), Expect = 0.005
Identities = 49/154 (31%), Positives = 56/154 (36%), Gaps = 41/154 (26%)
Query: 18 ALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAG-SPGLIPHKS-----PGPVLPGE 71
A A +A + + G G LG A P AG PG +P PG VLPG
Sbjct: 89 AAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGA 148
Query: 72 GVQGV-VLPLLRALQLGPPKGANL-----GVGGDLEEGESPASWGECGPGRGGSPGAASL 125
GV VLP G P GA + GVGG A G G G G P
Sbjct: 149 RFPGVGVLP-------GVPTGAGVKPKAPGVGG--------AFAGIPGVGPFGGP----- 188
Query: 126 RRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTT 159
Q G P +AP GGY + TT
Sbjct: 189 ---------QPGVPLGYPIKAPKLPGGYGLPYTT 213
Score = 36.6 bits (83), Expect = 0.014
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 23/137 (16%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKGAGALGA--GLLAFQPNDTAGSPGLIPHKSPG-- 65
P + + + VG P A++ A GA GL+ P G G+ PG
Sbjct: 276 PGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVG 335
Query: 66 ------PVLPGEGVQGVVLP-----------LLRALQLGPPKGANLGVGGDLEEGESPAS 108
PV+PG G+ G +P +A + G G +GVGG G
Sbjct: 336 VPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPG--VGVGGIPTYGVGAGG 393
Query: 109 WGECGPGRGGSPGAASL 125
+ G G GG PG A +
Sbjct: 394 FPGFGVGVGGIPGVAGV 410
Score = 34.7 bits (78), Expect = 0.053
Identities = 37/125 (29%), Positives = 45/125 (36%), Gaps = 13/125 (10%)
Query: 38 GALGAGLLAFQPNDTAGSPGLIPHKSPGPVL-PGEGVQGVVLPLLRALQLGPPKGANLG- 95
G L L P+ G PG IP PG V P G G L + G GA LG
Sbjct: 12 GVLLLLLSILHPSRPGGVPGAIPGGVPGGVFYPALGPGGKPLKPVPGGLAGAGLGAGLGA 71
Query: 96 ----------VGGDLEEGESPASWGECGPGRGGSPGAASLRRSDERFLQQKGDAASAPQR 145
V G + + + + G G GG PG L S + Q G A P +
Sbjct: 72 FPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQPG-AGVKPGK 130
Query: 146 APLAG 150
P G
Sbjct: 131 VPGVG 135
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 38.1 bits (87), Expect = 0.005
Identities = 49/154 (31%), Positives = 56/154 (36%), Gaps = 41/154 (26%)
Query: 18 ALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAG-SPGLIPHKS-----PGPVLPGE 71
A A +A + + G G LG A P AG PG +P PG VLPG
Sbjct: 99 AAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGA 158
Query: 72 GVQGV-VLPLLRALQLGPPKGANL-----GVGGDLEEGESPASWGECGPGRGGSPGAASL 125
GV VLP G P GA + GVGG A G G G G P
Sbjct: 159 RFPGVGVLP-------GVPTGAGVKPKAPGVGG--------AFAGIPGVGPFGGP----- 198
Query: 126 RRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTT 159
Q G P +AP GGY + TT
Sbjct: 199 ---------QPGVPLGYPIKAPKLPGGYGLPYTT 223
Score = 36.6 bits (83), Expect = 0.014
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 23/137 (16%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKGAGALGA--GLLAFQPNDTAGSPGLIPHKSPG-- 65
P + + + VG P A++ A GA GL+ P G G+ PG
Sbjct: 286 PGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVG 345
Query: 66 ------PVLPGEGVQGVVLP-----------LLRALQLGPPKGANLGVGGDLEEGESPAS 108
PV+PG G+ G +P +A + G G +GVGG G
Sbjct: 346 VPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPG--VGVGGIPTYGVGAGG 403
Query: 109 WGECGPGRGGSPGAASL 125
+ G G GG PG A +
Sbjct: 404 FPGFGVGVGGIPGVAGV 420
Score = 32.3 bits (72), Expect = 0.26
Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 23/135 (17%)
Query: 38 GALGAGLLAFQPNDTAGSPGLIPHKSPGPVL-PGEGV----QGVVLPLLRALQLGPP--K 90
G L L P+ G PG IP PG V PG G+ G + P + L+ P
Sbjct: 12 GVLLLLLSILHPSRPGGVPGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLA 71
Query: 91 GANLGVG---------------GDLEEGESPASWGECGPGRGGSPGAASLRRSDERFLQQ 135
GA LG G G + + + + G G GG PG L S + Q
Sbjct: 72 GAGLGAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQ 131
Query: 136 KGDAASAPQRAPLAG 150
G A P + P G
Sbjct: 132 PG-AGVKPGKVPGVG 145
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 38.1 bits (87), Expect = 0.005
Identities = 55/195 (28%), Positives = 68/195 (34%), Gaps = 33/195 (16%)
Query: 9 PPPPLRPLSALGAVGPP--EASSCWRNLKGA-GALGAGLLAFQPNDTAGSPGLIPHKSPG 65
PP P G +G P LKG G G L F G PG P PG
Sbjct: 1207 PPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 1264
Query: 66 PVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSPGA--- 122
P PG V + + + GPP G+ G+ + GE GP G PG
Sbjct: 1265 P--PGTPVYDSNV-FAESSRPGPP-----GLPGNQGPPGPKGAKGEVGPP--GPPGQFPF 1314
Query: 123 --ASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIP-LPAPTMPR 179
L + +GDA +R GGG+ F S +P P P PR
Sbjct: 1315 DFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGF------------FGSSLPGPPGPPGPR 1362
Query: 180 ALKGPRAPPGEGVEG 194
G P GE + G
Sbjct: 1363 GYPGIPGPKGESIRG 1377
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 38.1 bits (87), Expect = 0.005
Identities = 55/195 (28%), Positives = 68/195 (34%), Gaps = 33/195 (16%)
Query: 9 PPPPLRPLSALGAVGPP--EASSCWRNLKGA-GALGAGLLAFQPNDTAGSPGLIPHKSPG 65
PP P G +G P LKG G G L F G PG P PG
Sbjct: 792 PPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 849
Query: 66 PVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSPGA--- 122
P PG V + + + GPP G+ G+ + GE GP G PG
Sbjct: 850 P--PGTPVYDSNV-FAESSRPGPP-----GLPGNQGPPGPKGAKGEVGPP--GPPGQFPF 899
Query: 123 --ASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIP-LPAPTMPR 179
L + +GDA +R GGG+ F S +P P P PR
Sbjct: 900 DFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGF------------FGSSLPGPPGPPGPR 947
Query: 180 ALKGPRAPPGEGVEG 194
G P GE + G
Sbjct: 948 GYPGIPGPKGESIRG 962
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 38.1 bits (87), Expect = 0.005
Identities = 55/195 (28%), Positives = 68/195 (34%), Gaps = 33/195 (16%)
Query: 9 PPPPLRPLSALGAVGPP--EASSCWRNLKGA-GALGAGLLAFQPNDTAGSPGLIPHKSPG 65
PP P G +G P LKG G G L F G PG P PG
Sbjct: 972 PPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPG--PPGPPG 1029
Query: 66 PVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSPGA--- 122
P PG V + + + GPP G+ G+ + GE GP G PG
Sbjct: 1030 P--PGTPVYDSNV-FAESSRPGPP-----GLPGNQGPPGPKGAKGEVGPP--GPPGQFPF 1079
Query: 123 --ASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIP-LPAPTMPR 179
L + +GDA +R GGG+ F S +P P P PR
Sbjct: 1080 DFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGF------------FGSSLPGPPGPPGPR 1127
Query: 180 ALKGPRAPPGEGVEG 194
G P GE + G
Sbjct: 1128 GYPGIPGPKGESIRG 1142
>gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2
[Homo sapiens]
Length = 585
Score = 37.4 bits (85), Expect = 0.008
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 69 PGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSPGAASLRR 127
PG G +G ++P PP A LG SP SW GPGRGG G++ + R
Sbjct: 37 PGGGTRGSLVPTRPV----PPSPAPLGT--------SPYSWSRSGPGRGGGAGSSRVPR 83
>gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1
[Homo sapiens]
Length = 851
Score = 37.4 bits (85), Expect = 0.008
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 69 PGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSPGAASLRR 127
PG G +G ++P PP A LG SP SW GPGRGG G++ + R
Sbjct: 37 PGGGTRGSLVPTRPV----PPSPAPLGT--------SPYSWSRSGPGRGGGAGSSRVPR 83
>gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a
[Homo sapiens]
Length = 1130
Score = 36.6 bits (83), Expect = 0.014
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 4 ISSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKS 63
+S + P PP P ++ G G + S + G LGA A D S P +
Sbjct: 892 LSRLKPAPPPPPAASAGKAGGKPSQSPSQEAAGEAVLGAKTKATSLVDAVNSDAAKPSQ- 950
Query: 64 PGPVLPGEGVQGVVLPLLRALQLGPPKG 91
PGEG++ VLP Q P G
Sbjct: 951 -----PGEGLKKPVLPATPKPQSAKPSG 973
>gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b
[Homo sapiens]
Length = 1149
Score = 36.6 bits (83), Expect = 0.014
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 4 ISSMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKS 63
+S + P PP P ++ G G + S + G LGA A D S P +
Sbjct: 911 LSRLKPAPPPPPAASAGKAGGKPSQSPSQEAAGEAVLGAKTKATSLVDAVNSDAAKPSQ- 969
Query: 64 PGPVLPGEGVQGVVLPLLRALQLGPPKG 91
PGEG++ VLP Q P G
Sbjct: 970 -----PGEGLKKPVLPATPKPQSAKPSG 992
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 36.6 bits (83), Expect = 0.014
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 23/137 (16%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKGAGALGA--GLLAFQPNDTAGSPGLIPHKSPG-- 65
P + + + VG P A++ A GA GL+ P G G+ PG
Sbjct: 291 PGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVG 350
Query: 66 ------PVLPGEGVQGVVLP-----------LLRALQLGPPKGANLGVGGDLEEGESPAS 108
PV+PG G+ G +P +A + G G +GVGG G
Sbjct: 351 VPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPG--VGVGGIPTYGVGAGG 408
Query: 109 WGECGPGRGGSPGAASL 125
+ G G GG PG A +
Sbjct: 409 FPGFGVGVGGIPGVAGV 425
Score = 35.0 bits (79), Expect = 0.040
Identities = 45/158 (28%), Positives = 53/158 (33%), Gaps = 17/158 (10%)
Query: 38 GALGAGLLAFQPNDTAGSPGLIPHKSPGPVL-PGEGVQGVVLPLLRALQLGPPKGANLGV 96
G L L P+ G PG IP PG V PG G LG G LG
Sbjct: 12 GVLLLLLSILHPSRPGGVPGAIPGGVPGGVFYPGAG-------------LGALGGGALGP 58
Query: 97 GGDLEEGESPASWGECGPGRGGSPGAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVT 156
GG + P G G G G GA + A+A +A AG G
Sbjct: 59 GG---KPLKPVPGGLAGAGLGAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGV 115
Query: 157 LTTVLLFVTFRSKIPLPAPTMPRALKGPRAPPGEGVEG 194
L V+ +P P A P PG G+ G
Sbjct: 116 PGVGGLGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPG 153
Score = 35.0 bits (79), Expect = 0.040
Identities = 43/145 (29%), Positives = 51/145 (35%), Gaps = 18/145 (12%)
Query: 18 ALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPG--LIPHKSPGPVLPGEGVQG 75
A A +A + + G G LG P PG + P K PG LPG G
Sbjct: 99 AAAAYKAAKAGAGLGGVPGVGGLGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGV-YPG 157
Query: 76 VVLPLLRALQLGPPKGANLGVGGDLEE-GESPASWGECGPGRGGSPGAASLRRSDERFLQ 134
VLP R +G G G G + G A G G G G P
Sbjct: 158 GVLPGARFPGVGVLPGVPTGAGVKPKAPGVGGAFAGIPGVGPFGGP-------------- 203
Query: 135 QKGDAASAPQRAPLAGGGYSVTLTT 159
Q G P +AP GGY + TT
Sbjct: 204 QPGVPLGYPIKAPKLPGGYGLPYTT 228
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 36.6 bits (83), Expect = 0.014
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 23/137 (16%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKGAGALGA--GLLAFQPNDTAGSPGLIPHKSPG-- 65
P + + + VG P A++ A GA GL+ P G G+ PG
Sbjct: 291 PGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVG 350
Query: 66 ------PVLPGEGVQGVVLP-----------LLRALQLGPPKGANLGVGGDLEEGESPAS 108
PV+PG G+ G +P +A + G G +GVGG G
Sbjct: 351 VPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPG--VGVGGIPTYGVGAGG 408
Query: 109 WGECGPGRGGSPGAASL 125
+ G G GG PG A +
Sbjct: 409 FPGFGVGVGGIPGVAGV 425
Score = 35.0 bits (79), Expect = 0.040
Identities = 45/158 (28%), Positives = 53/158 (33%), Gaps = 17/158 (10%)
Query: 38 GALGAGLLAFQPNDTAGSPGLIPHKSPGPVL-PGEGVQGVVLPLLRALQLGPPKGANLGV 96
G L L P+ G PG IP PG V PG G LG G LG
Sbjct: 12 GVLLLLLSILHPSRPGGVPGAIPGGVPGGVFYPGAG-------------LGALGGGALGP 58
Query: 97 GGDLEEGESPASWGECGPGRGGSPGAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVT 156
GG + P G G G G GA + A+A +A AG G
Sbjct: 59 GG---KPLKPVPGGLAGAGLGAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGV 115
Query: 157 LTTVLLFVTFRSKIPLPAPTMPRALKGPRAPPGEGVEG 194
L V+ +P P A P PG G+ G
Sbjct: 116 PGVGGLGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPG 153
Score = 35.0 bits (79), Expect = 0.040
Identities = 43/145 (29%), Positives = 51/145 (35%), Gaps = 18/145 (12%)
Query: 18 ALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPG--LIPHKSPGPVLPGEGVQG 75
A A +A + + G G LG P PG + P K PG LPG G
Sbjct: 99 AAAAYKAAKAGAGLGGVPGVGGLGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGV-YPG 157
Query: 76 VVLPLLRALQLGPPKGANLGVGGDLEE-GESPASWGECGPGRGGSPGAASLRRSDERFLQ 134
VLP R +G G G G + G A G G G G P
Sbjct: 158 GVLPGARFPGVGVLPGVPTGAGVKPKAPGVGGAFAGIPGVGPFGGP-------------- 203
Query: 135 QKGDAASAPQRAPLAGGGYSVTLTT 159
Q G P +AP GGY + TT
Sbjct: 204 QPGVPLGYPIKAPKLPGGYGLPYTT 228
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 36.2 bits (82), Expect = 0.018
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 9 PPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKSPGPVL 68
PPPP PL ++GA P A L G GA+ P GS +P P P L
Sbjct: 439 PPPPPPPLPSVGAKALPTAPPP-PPLPGLGAMAPPAPPLPP-PLPGSCEFLP--PPPPPL 494
Query: 69 PGEGVQGVVLPLLRALQLGPP 89
PG G PLL + GPP
Sbjct: 495 PGLGCPPPPPPLLPGMGWGPP 515
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 36.2 bits (82), Expect = 0.018
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 9 PPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKSPGPVL 68
PPPP PL ++GA P A L G GA+ P GS +P P P L
Sbjct: 439 PPPPPPPLPSVGAKALPTAPPP-PPLPGLGAMAPPAPPLPP-PLPGSCEFLP--PPPPPL 494
Query: 69 PGEGVQGVVLPLLRALQLGPP 89
PG G PLL + GPP
Sbjct: 495 PGLGCPPPPPPLLPGMGWGPP 515
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 35.8 bits (81), Expect = 0.024
Identities = 61/196 (31%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 6 SMSPPPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLIPHKSPG 65
++ PP P+ A G G P S KGA + + P + G PG PG
Sbjct: 511 TVGPPGPVGERGAPGNRGFP-GSDGLPGPKGAQGERGPVGSSGPKGSQGDPG-----RPG 564
Query: 66 -PVLPGE----GVQGVVLPLLRALQLGPP-KGANLGVGGDLEEGESPASWGECGP-GRGG 118
P LPG G GV P + LG P + G G + P S G GP G G
Sbjct: 565 EPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSG 624
Query: 119 SPGAASLRRSDERFLQQKGDAASAPQR-APLAGG--GYSVTLTTVLLFVTFRSKIPLPAP 175
PG + G+A QR AP G G S + L + P P P
Sbjct: 625 DPGKPG----------EAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGP-PGP 673
Query: 176 TMPRALKGPRAPPGEG 191
T + L GP PPGEG
Sbjct: 674 TGFQGLPGPPGPPGEG 689
Score = 31.2 bits (69), Expect = 0.58
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 49 PNDTAGSPGLIPHKSPGPVLPGEGVQGVVLPLLRALQLGP-PKGANLGVGGDLEEGESPA 107
P+ GSPG P +PG P G+QG +P R + P PKG G+G EG +
Sbjct: 739 PDGPKGSPG--PSGTPGDTGP-PGLQG--MPGERGIAGTPGPKGDRGGIGEKGAEGTAGN 793
Query: 108 SWGECGPGRGGSPGAA 123
PG G PG A
Sbjct: 794 DGARGLPGPLGPPGPA 809
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 35.4 bits (80), Expect = 0.031
Identities = 38/124 (30%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 1 MAFISSMSPPPP-LRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLI 59
M + PPPP P + GP + G G G G+ + +G G
Sbjct: 1 MTILPKKKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGGDRDRDSGVVGAR 60
Query: 60 PHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGS 119
P SP P P G G L L P GA V G + SP G G G GG
Sbjct: 61 PRASPPPQGPLPGPPGA----LHRWALAVPPGA---VAGPRPQQASPPPCGGPG-GPGGG 112
Query: 120 PGAA 123
PG A
Sbjct: 113 PGDA 116
Score = 31.2 bits (69), Expect = 0.58
Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQ----PNDTAGSPGLIPHKSPG 65
PPP PL GPP A W GA+ AG Q P G PG P + G
Sbjct: 65 PPPQGPLP-----GPPGALHRWALAVPPGAV-AGPRPQQASPPPCGGPGGPGGGPGDALG 118
Query: 66 PVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP 120
G G GVV+ + A+ +G G G G ++P G GGSP
Sbjct: 119 AAAAGVGAAGVVVGVGGAVGVG---GCCSGPGHSKRRRQAPG----VGAVGGGSP 166
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 35.4 bits (80), Expect = 0.031
Identities = 38/124 (30%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 1 MAFISSMSPPPP-LRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLI 59
M + PPPP P + GP + G G G G+ + +G G
Sbjct: 1 MTILPKKKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGGDRDRDSGVVGAR 60
Query: 60 PHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGS 119
P SP P P G G L L P GA V G + SP G G G GG
Sbjct: 61 PRASPPPQGPLPGPPGA----LHRWALAVPPGA---VAGPRPQQASPPPCGGPG-GPGGG 112
Query: 120 PGAA 123
PG A
Sbjct: 113 PGDA 116
Score = 31.2 bits (69), Expect = 0.58
Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQ----PNDTAGSPGLIPHKSPG 65
PPP PL GPP A W GA+ AG Q P G PG P + G
Sbjct: 65 PPPQGPLP-----GPPGALHRWALAVPPGAV-AGPRPQQASPPPCGGPGGPGGGPGDALG 118
Query: 66 PVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP 120
G G GVV+ + A+ +G G G G ++P G GGSP
Sbjct: 119 AAAAGVGAAGVVVGVGGAVGVG---GCCSGPGHSKRRRQAPG----VGAVGGGSP 166
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 35.4 bits (80), Expect = 0.031
Identities = 38/124 (30%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 1 MAFISSMSPPPP-LRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQPNDTAGSPGLI 59
M + PPPP P + GP + G G G G+ + +G G
Sbjct: 1 MTILPKKKPPPPDADPANEPPPPGPMPPAPRRGGGVGVGGGGTGVGGGDRDRDSGVVGAR 60
Query: 60 PHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGS 119
P SP P P G G L L P GA V G + SP G G G GG
Sbjct: 61 PRASPPPQGPLPGPPGA----LHRWALAVPPGA---VAGPRPQQASPPPCGGPG-GPGGG 112
Query: 120 PGAA 123
PG A
Sbjct: 113 PGDA 116
Score = 31.2 bits (69), Expect = 0.58
Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 10 PPPLRPLSALGAVGPPEASSCWRNLKGAGALGAGLLAFQ----PNDTAGSPGLIPHKSPG 65
PPP PL GPP A W GA+ AG Q P G PG P + G
Sbjct: 65 PPPQGPLP-----GPPGALHRWALAVPPGAV-AGPRPQQASPPPCGGPGGPGGGPGDALG 118
Query: 66 PVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECGPGRGGSP 120
G G GVV+ + A+ +G G G G ++P G GGSP
Sbjct: 119 AAAAGVGAAGVVVGVGGAVGVG---GCCSGPGHSKRRRQAPG----VGAVGGGSP 166
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 35.0 bits (79), Expect = 0.040
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 34 LKGAGALGAGLLA----FQPNDTAGSPGLIPHKSP-------GPVLPGEGVQGVVLPLLR 82
L+ G G+ L A F AG+P + +P G +LP G V P R
Sbjct: 146 LQSPGPQGSELAAPCSLFPYQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVCPPGR 205
Query: 83 ALQLGPPKGANLGVGGDLEEGESPAS--WGECGPGRGGSPGAAS 124
A Q GP GA G GG G P + + + P G PGAA+
Sbjct: 206 A-QFGPGAGAGSGAGGSSGGGGGPGTYQYSQGAPLYGPYPGAAA 248
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 35.0 bits (79), Expect = 0.040
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 7/152 (4%)
Query: 9 PPPPLRPLSALGAVGPPEASSCWRNLKGAGALG---AGLLAFQPNDTAGSPGLIPHKSPG 65
PP LR + +GP + L+G G +G G+ + A + G P
Sbjct: 681 PPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPA 740
Query: 66 PVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEG--ESPASWGECGPGRGGSPGAA 123
P P E V+G P + + G P G+ G + G + PA+ G G G
Sbjct: 741 PSEPPEAVEGKASPREQG-EEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLG 799
Query: 124 SLRRSD-ERFLQQKGDAASAPQRAPLAGGGYS 154
L S R L + A AP A AG S
Sbjct: 800 KLVPSPAPRELYLRATRAVAPGGAHAAGASIS 831
Score = 29.3 bits (64), Expect = 2.2
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 113 GPGRGGSPGAASLRRSDERFLQQKGDAASAPQRAPLAGGGYSVTLTTVLLFVTFRSKIPL 172
GP G+ GAA LR E +Q+ G R A G + PL
Sbjct: 695 GPEVPGAVGAA-LRGGGEVGIQEGGVRGPPTSRPARAQGA---------------QESPL 738
Query: 173 PAPTMP-RALKGPRAPPGEGVEGA 195
PAP+ P A++G +P +G EGA
Sbjct: 739 PAPSEPPEAVEGKASPREQGEEGA 762
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 35.0 bits (79), Expect = 0.040
Identities = 45/156 (28%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 54 GSPGLI-PHKSPG-PVLPG-EGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWG 110
G PG I P PG P LPG +G +G + GPP G E GE A
Sbjct: 341 GEPGFIGPQGEPGLPGLPGTKGERG---------EAGPP--------GRGERGEPGA--- 380
Query: 111 ECGPGRGGSPGAASLR--RSDERFLQQKGDAASAPQRAPLAGGG---------YSVTLTT 159
PG G G + R + + +KGD+ + R P G Y+ L
Sbjct: 381 ---PGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHE 437
Query: 160 VLLFVTFRSKIPLPAPTMPRALKGPRAPPGE-GVEG 194
L +T + P P P+ L+GP+ G G+ G
Sbjct: 438 ALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPG 473
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,323,761
Number of Sequences: 37866
Number of extensions: 720474
Number of successful extensions: 3598
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 3109
Number of HSP's gapped (non-prelim): 711
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.