Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287120 Sequence: fasta or formatted (195aa) NCBI GI: 239746309
Description:

PREDICTED: hypothetical protein XP_002343728

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         23           2
 C cysteine            1.0          2           1
 D aspartate           2.1          4           1
 E glutamate           4.6          9           2
 F phenylalanine       2.6          5           1
 G glycine            16.4         32           3
 H histidine           0.5          1           1
 I isoleucine          1.5          3           1
 K lysine              3.1          6           1
 L leucine            12.3         24           2
 M methionine          1.5          3           1
 N asparagine          1.5          3           1
 P proline            14.4         28           4
 Q glutamine           3.1          6           2
 R arginine            5.6         11           2
 S serine              8.2         16           2
 T threonine           3.1          6           2
 V valine              5.1         10           2
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343728 
LOC100289886          1.000   PREDICTED: hypothetical protein XP_002348008 
LOC440829             0.053   PREDICTED: transmembrane protein 46-like 
COL7A1                0.045   alpha 1 type VII collagen precursor 
SMARCD2               0.040   SWI/SNF-related matrix-associated actin-dependent r...
TAF4                  0.040   TBP-associated factor 4 
LOC100289704          0.040   PREDICTED: hypothetical protein XP_002347777 
LOC100287039          0.040   PREDICTED: hypothetical protein XP_002342225 
BCL9L                 0.037   B-cell CLL/lymphoma 9-like 
ELN                   0.035   elastin isoform e precursor 
ELN                   0.035   elastin isoform b precursor 
ELN                   0.035   elastin isoform a precursor 
COL18A1               0.035   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.035   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.035   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
DDX31                 0.032   DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ...
DDX31                 0.032   DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ...
ABL1                  0.032   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.032   c-abl oncogene 1, receptor tyrosine kinase isoform b...
ELN                   0.032   elastin isoform d precursor 
ELN                   0.032   elastin isoform c precursor 
INF2                  0.029   inverted formin 2 isoform 2 
INF2                  0.029   inverted formin 2 isoform 1 
COL5A2                0.029   alpha 2 type V collagen preproprotein 
OTUD5                 0.027   OTU domain containing 5 isoform a 
OTUD5                 0.027   OTU domain containing 5 isoform b 
OTUD5                 0.027   OTU domain containing 5 isoform b 
EOMES                 0.027   eomesodermin 
LOC100287558          0.027   PREDICTED: hypothetical protein XP_002343325 
COL25A1               0.027   collagen, type XXV, alpha 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press