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Search of human proteins with 239751382
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751382 PREDICTED: hypothetical protein XP_002347832 [Homo
sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756886 PREDICTED: hypothetical protein [Homo sapiens] 431 e-121
gi|239751382 PREDICTED: hypothetical protein XP_002347832 [Homo ... 431 e-121
gi|239745889 PREDICTED: hypothetical protein XP_002343609 [Homo ... 431 e-121
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|169234951 coiled-coil domain containing 17 [Homo sapiens] 35 0.059
gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo sap... 33 0.17
gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo sa... 33 0.17
gi|24797116 calcium-binding tyrosine phosphorylation-regulated p... 32 0.50
gi|24797112 calcium-binding tyrosine phosphorylation-regulated p... 32 0.50
gi|24797110 calcium-binding tyrosine phosphorylation-regulated p... 32 0.50
gi|14149793 glutamine rich 2 [Homo sapiens] 32 0.50
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens] 31 0.65
gi|38348280 SH2 domain containing 6 [Homo sapiens] 31 0.65
gi|24797118 calcium-binding tyrosine phosphorylation-regulated p... 31 0.65
gi|163965366 nascent polypeptide-associated complex alpha subuni... 31 0.65
gi|148806881 hypothetical protein LOC57608 [Homo sapiens] 31 0.85
gi|239756245 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239750783 PREDICTED: hypothetical protein XP_002347553 [Homo ... 30 1.1
gi|239745091 PREDICTED: hypothetical protein XP_002343358 [Homo ... 30 1.1
gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens] 30 1.1
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 30 1.1
gi|116089333 kelch domain containing 7A [Homo sapiens] 30 1.1
gi|24797114 calcium-binding tyrosine phosphorylation-regulated p... 30 1.9
gi|24797108 calcium-binding tyrosine phosphorylation-regulated p... 30 1.9
gi|29826341 calmodulin binding transcription activator 2 [Homo s... 30 1.9
gi|118402590 myosin XV [Homo sapiens] 29 2.5
gi|239756043 PREDICTED: similar to hCG2041645 [Homo sapiens] 29 2.5
gi|239750566 PREDICTED: hypothetical protein XP_002347457 [Homo ... 29 2.5
>gi|239756886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 431 bits (1109), Expect = e-121
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG 60
MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG
Sbjct: 1 MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG 60
Query: 61 LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR 120
LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR
Sbjct: 61 LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR 120
Query: 121 GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK 180
GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK
Sbjct: 121 GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK 180
Query: 181 EAPGLCQRPQSIAGRVRPSQQPELSVI 207
EAPGLCQRPQSIAGRVRPSQQPELSVI
Sbjct: 181 EAPGLCQRPQSIAGRVRPSQQPELSVI 207
>gi|239751382 PREDICTED: hypothetical protein XP_002347832 [Homo
sapiens]
Length = 207
Score = 431 bits (1109), Expect = e-121
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG 60
MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG
Sbjct: 1 MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG 60
Query: 61 LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR 120
LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR
Sbjct: 61 LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR 120
Query: 121 GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK 180
GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK
Sbjct: 121 GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK 180
Query: 181 EAPGLCQRPQSIAGRVRPSQQPELSVI 207
EAPGLCQRPQSIAGRVRPSQQPELSVI
Sbjct: 181 EAPGLCQRPQSIAGRVRPSQQPELSVI 207
>gi|239745889 PREDICTED: hypothetical protein XP_002343609 [Homo
sapiens]
Length = 207
Score = 431 bits (1109), Expect = e-121
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG 60
MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG
Sbjct: 1 MPGLSNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRFTG 60
Query: 61 LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR 120
LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR
Sbjct: 61 LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVR 120
Query: 121 GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK 180
GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK
Sbjct: 121 GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQHQVYRHAPGK 180
Query: 181 EAPGLCQRPQSIAGRVRPSQQPELSVI 207
EAPGLCQRPQSIAGRVRPSQQPELSVI
Sbjct: 181 EAPGLCQRPQSIAGRVRPSQQPELSVI 207
>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 35.8 bits (81), Expect = 0.026
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 23 HSSLPRGTRFRVPWPNSI----TSFIQLSGSSVWIRASRFTGLT--RPNAKVLTTLPSAH 76
HSSLP G + P P + T F L S + I R LT RPN ++T +AH
Sbjct: 197 HSSLPGGKQETAPPPQPVRTTQTFFSPLFSSKLGIHGDRAGSLTALRPNPDLVTVPLTAH 256
Query: 77 PP--PP 80
PP PP
Sbjct: 257 PPVHPP 262
>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 35.8 bits (81), Expect = 0.026
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 23 HSSLPRGTRFRVPWPNSI----TSFIQLSGSSVWIRASRFTGLT--RPNAKVLTTLPSAH 76
HSSLP G + P P + T F L S + I R LT RPN ++T +AH
Sbjct: 197 HSSLPGGKQETAPPPQPVRTTQTFFSPLFSSKLGIHGDRAGSLTALRPNPDLVTVPLTAH 256
Query: 77 PP--PP 80
PP PP
Sbjct: 257 PPVHPP 262
>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
Length = 536
Score = 35.8 bits (81), Expect = 0.026
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 23 HSSLPRGTRFRVPWPNSI----TSFIQLSGSSVWIRASRFTGLT--RPNAKVLTTLPSAH 76
HSSLP G + P P + T F L S + I R LT RPN ++T +AH
Sbjct: 234 HSSLPGGKQETAPPPQPVRTTQTFFSPLFSSKLGIHGDRAGSLTALRPNPDLVTVPLTAH 293
Query: 77 PP--PP 80
PP PP
Sbjct: 294 PPVHPP 299
>gi|169234951 coiled-coil domain containing 17 [Homo sapiens]
Length = 590
Score = 34.7 bits (78), Expect = 0.059
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 17/85 (20%)
Query: 46 LSGSSVWIRASRFTGLTRPNAKV--LTTLPSAH--PPPPAISPRTYIPGKVGDLILVEA- 100
L S +W++ TGL R T LP A PPPPA PG +G+ ++ +
Sbjct: 376 LEASWIWVQLR--TGLARDGRDTGRTTALPPALCLPPPPA-------PGPMGNCAILASR 426
Query: 101 -SLPKDSPAPLVHLSCELRVRGWKG 124
+P+ P+ V L CEL+V W+G
Sbjct: 427 QPVPRLPPSSSVSLVCELQV--WQG 449
>gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo
sapiens]
Length = 1048
Score = 33.1 bits (74), Expect = 0.17
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 12 RRHPTTEKRCLHSSLPRGTRFRVPWPNS-ITSFIQLSGSSVWIRASRFTGLTRPNAK-VL 69
R +P + H ++ T V P + +T + LS S GL +P K +
Sbjct: 99 RPYPQVQMLSTHHAVASATPVAVTAPPAHLTPAVPLSFSE---------GLMKPPPKPTM 149
Query: 70 TTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVRGWKGTPLHL 129
+ P A PP +S +PG+V + +E+S+P+ S P+ +S G +G P +L
Sbjct: 150 PSRPIAPAPPSTLSLPPKVPGQV--TVTMESSIPQASAIPVATIS------GQQGHPSNL 201
>gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo
sapiens]
Length = 1083
Score = 33.1 bits (74), Expect = 0.17
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 12 RRHPTTEKRCLHSSLPRGTRFRVPWPNS-ITSFIQLSGSSVWIRASRFTGLTRPNAK-VL 69
R +P + H ++ T V P + +T + LS S GL +P K +
Sbjct: 99 RPYPQVQMLSTHHAVASATPVAVTAPPAHLTPAVPLSFSE---------GLMKPPPKPTM 149
Query: 70 TTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRVRGWKGTPLHL 129
+ P A PP +S +PG+V + +E+S+P+ S P+ +S G +G P +L
Sbjct: 150 PSRPIAPAPPSTLSLPPKVPGQV--TVTMESSIPQASAIPVATIS------GQQGHPSNL 201
>gi|24797116 calcium-binding tyrosine phosphorylation-regulated
protein isoform c [Homo sapiens]
Length = 379
Score = 31.6 bits (70), Expect = 0.50
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPR-TYIPGKVGDL---ILVEASLPKDSPAP 109
GL+ A TT P + PPP A+SP Y+P L +L A+ + P P
Sbjct: 139 GLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLAMATSERGQPPP 192
>gi|24797112 calcium-binding tyrosine phosphorylation-regulated
protein isoform c [Homo sapiens]
Length = 379
Score = 31.6 bits (70), Expect = 0.50
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPR-TYIPGKVGDL---ILVEASLPKDSPAP 109
GL+ A TT P + PPP A+SP Y+P L +L A+ + P P
Sbjct: 139 GLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLAMATSERGQPPP 192
>gi|24797110 calcium-binding tyrosine phosphorylation-regulated
protein isoform d [Homo sapiens]
Length = 281
Score = 31.6 bits (70), Expect = 0.50
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPR-TYIPGKVGDL---ILVEASLPKDSPAP 109
GL+ A TT P + PPP A+SP Y+P L +L A+ + P P
Sbjct: 41 GLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLAMATSERGQPPP 94
>gi|14149793 glutamine rich 2 [Homo sapiens]
Length = 1663
Score = 31.6 bits (70), Expect = 0.50
Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 41/226 (18%)
Query: 5 SNNHKEQRRHPTTEKRCLHSSLPRGTRFRVPWPNSITSFIQLSGSSVWIRASRF----TG 60
S+ H+ + + +T+ R ++ P + +P S + S S V +R R TG
Sbjct: 173 SDRHRSREKLTSTQPR--RNARPGPVQQDLPLARDQPSSVPASQSQVHLRPDRRGLEPTG 230
Query: 61 LTRPNAKVLTTLPSA---------HPPPPAISPRTYIPGKVGDLILVEAS---------- 101
+ +P +T P PPP + R IP V + ++ S
Sbjct: 231 MNQPGLVPASTYPHGVVPLSMGQLGVPPPEMDDRELIPFVVDEQRMLPPSVPGRDQQGLE 290
Query: 102 LPKDSPAPLVHLSCELRVRGWKGT------PLHLGEECGAPLQGQLVEGEVVITVVQQFL 155
LP LV +S + GT PL + ++ G + G +G V + QQ L
Sbjct: 291 LPSTDQHGLVSVSAYQHGMTFPGTDQRSMEPLGM-DQRGCVISGMGQQGLVPPGIDQQGL 349
Query: 156 QLPKPRPH--LLCRQPQHQVYRHAPGKEAPGLCQRPQSIAGRVRPS 199
LP H +L QH G +PGL G V+PS
Sbjct: 350 TLPVVDQHGLVLPFTDQH-------GLVSPGLMPISADQQGFVQPS 388
>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
Length = 667
Score = 31.2 bits (69), Expect = 0.65
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 139 GQLVEGEVVITVVQQFLQLPKPRPHL-LCRQPQHQVYRHAPGKEAPGLCQRPQSIA 193
G L+ +VV Q LQ +PRP L L + PQ PG PGL + P SIA
Sbjct: 456 GPLLCSQVVKARAQAALQAQQPRPTLTLSQAPQ-------PGPRTPGLLKVPGSIA 504
>gi|38348280 SH2 domain containing 6 [Homo sapiens]
Length = 175
Score = 31.2 bits (69), Expect = 0.65
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 11/45 (24%)
Query: 74 SAHPPPPAISPRTYI--------PGKVGDLILVE---ASLPKDSP 107
S++PPPP +SPR+++ P ++ +L+L+E +SLP +P
Sbjct: 4 SSYPPPPQLSPRSHLCPPPPHPTPPQLNNLLLLEGRKSSLPSVAP 48
>gi|24797118 calcium-binding tyrosine phosphorylation-regulated
protein isoform e [Homo sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 0.65
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 21/95 (22%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPR-TYIPGKVGDLILVEASLPKDSPAPLVHLSCELR 118
GL+ A TT P + PPP A+SP Y+P PA L E
Sbjct: 139 GLSSKPATPKTTTPPSSPPPTAVSPEFAYVPA---------------DPAQLAAQMLEDV 183
Query: 119 VRGWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQ 153
+ G+ G++C AP + GEV +T +
Sbjct: 184 AKKSSGS----GDKC-APFGSYGIAGEVTVTTAHK 213
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 31.2 bits (69), Expect = 0.65
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 61 LTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRV- 119
+T P+ K T P+ PP P P T P V S KDSP ++C++
Sbjct: 1605 VTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGAT 1664
Query: 120 --RGWKGTPLHLG 130
+ KG P G
Sbjct: 1665 VPQASKGLPAKKG 1677
Score = 27.7 bits (60), Expect = 7.2
Identities = 18/49 (36%), Positives = 20/49 (40%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPA 108
G P+ K T P+A PP P P T P V PK SPA
Sbjct: 976 GPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPA 1024
Score = 27.3 bits (59), Expect = 9.4
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRV 119
GL P+ K T P+A PP P P T PK +P P L
Sbjct: 1231 GLATPSPKGAPTTPAATPPSPKGGPAT--------------PPPKGAPTPPAATPPSL-- 1274
Query: 120 RGWKGTPLHLG 130
+G TP H G
Sbjct: 1275 KGGLATPPHKG 1285
>gi|148806881 hypothetical protein LOC57608 [Homo sapiens]
Length = 1359
Score = 30.8 bits (68), Expect = 0.85
Identities = 29/115 (25%), Positives = 42/115 (36%)
Query: 48 GSSVWIRASRFTGLTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSP 107
G S+ RA+R G+ +L + A PA + + L+ P D P
Sbjct: 1079 GESLQARAARILGIEVAVESLLPGIRRAGQNQPAEPDASACTPESPQEELLSRPAPADVP 1138
Query: 108 APLVHLSCELRVRGWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRP 162
R GW +PL +G+ A Q E V VV +P+P P
Sbjct: 1139 RVSTDAFYGRRKCGWTKSPLFVGDRDSARRAPQAFEHSDVDGVVTSTDPVPEPEP 1193
>gi|239756245 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 30.4 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 57 RFTGLTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGD 94
R TGLT+ V P PP P ++P T PG + D
Sbjct: 31 RVTGLTQDAEAVPYCRPQGAPPLPTLAPHTQPPGPLRD 68
>gi|239750783 PREDICTED: hypothetical protein XP_002347553 [Homo
sapiens]
Length = 235
Score = 30.4 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 57 RFTGLTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGD 94
R TGLT+ V P PP P ++P T PG + D
Sbjct: 31 RVTGLTQDAEAVPYCRPQGAPPLPTLAPHTQPPGPLRD 68
>gi|239745091 PREDICTED: hypothetical protein XP_002343358 [Homo
sapiens]
Length = 216
Score = 30.4 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 57 RFTGLTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGD 94
R TGLT+ V P PP P ++P T PG + D
Sbjct: 31 RVTGLTQDAEAVPYCRPQGAPPLPTLAPHTQPPGPLRD 68
>gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens]
Length = 1123
Score = 30.4 bits (67), Expect = 1.1
Identities = 37/156 (23%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPLVHLSCELRV 119
GL N + LPS P P T++P IL + PAP H S
Sbjct: 497 GLKSQNGCIPPKLPSGSPSPKLSQTPTHMP-----TILDDPGKKVKKPAPPQHFS-PRTA 550
Query: 120 RGWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPH----------LLCRQP 169
+G GT G+ QG +VV++ + L H L R
Sbjct: 551 QGLPGTSNSNSSRSGSQRQGSWDSRDVVLSTSPKLLATATANGHGLKGNDESAGLDRRGS 610
Query: 170 QHQVYRHAPGKEAPGLCQRPQSIAGRVRPSQQPELS 205
H+ ++ Q P+S A + SQ+ S
Sbjct: 611 SSSSPEHSASSDSTKAPQTPRSGAAHLCDSQETNCS 646
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 30.4 bits (67), Expect = 1.1
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 61 LTRPNAKVLTTLPSAHP--PPPAISPRTYIPG-----KVGDLIL--VEASLPKDSPAPLV 111
+++P A PS+HP PPPA P T PG + + ++ + L K++P+P
Sbjct: 1015 VSKPPAYAYPATPSSHPTSPPPASPPPT--PGITRKEEAPENVVEKKDLELEKEAPSPFQ 1072
Query: 112 HLSCELRVR-GWKGTPLHLGEECGAPLQGQLVEGEVVITVVQQFLQLPKPRPHLLCRQPQ 170
L ++ R ++ P H G LQ + + LP P L P+
Sbjct: 1073 ALFSDIPPRYPFQALPPHYGRPYPFLLQPTAAAD---ADGLAPDVPLPADGPERLALSPE 1129
Query: 171 HQVYRHAPGKEAPGLCQRPQ 190
+ R +P K L + P+
Sbjct: 1130 DKPIRLSPSKITEPLREGPE 1149
>gi|116089333 kelch domain containing 7A [Homo sapiens]
Length = 777
Score = 30.4 bits (67), Expect = 1.1
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 58 FTGLTRPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDL--ILVEASLPKDSPAP 109
F G P LT +PS PPP ++ G+ GD A+ P+ P P
Sbjct: 302 FQGRLAPRTAALTEVPSPRPPPGSLGTGAASGGQAGDTKGAAERAASPQTGPWP 355
>gi|24797114 calcium-binding tyrosine phosphorylation-regulated
protein isoform b [Homo sapiens]
Length = 475
Score = 29.6 bits (65), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPR-TYIPGKVGDL 95
GL+ A TT P + PPP A+SP Y+P L
Sbjct: 121 GLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQL 157
>gi|24797108 calcium-binding tyrosine phosphorylation-regulated
protein isoform a [Homo sapiens]
Length = 493
Score = 29.6 bits (65), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 60 GLTRPNAKVLTTLPSAHPPPPAISPR-TYIPGKVGDL 95
GL+ A TT P + PPP A+SP Y+P L
Sbjct: 139 GLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQL 175
>gi|29826341 calmodulin binding transcription activator 2 [Homo
sapiens]
Length = 1202
Score = 29.6 bits (65), Expect = 1.9
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 64 PNAKVLTTLPSAHP--PPPAISP 84
P A LT++P AHP PPP I+P
Sbjct: 256 PRALTLTSIPHAHPPEPPPLIAP 278
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 63 RPNAKVLTTLPSAHPPPPAISPRTYIPGKVGDLILVEASLPKDSPAPL 110
+P + L +LP+ PP P P + G +L+ A+ +PAPL
Sbjct: 2479 QPLSAALRSLPAEKPPAPEAQPTSVGTGPPAKPVLLRATPKPLAPAPL 2526
>gi|239756043 PREDICTED: similar to hCG2041645 [Homo sapiens]
Length = 147
Score = 29.3 bits (64), Expect = 2.5
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 80 PAISPRTYIPGKVGD---------LILVEASLPKDSPAPLVHLSCELRVRGWKGTPLHLG 130
PA S +++PGK L+L AS D P + L C R W G PL +
Sbjct: 8 PAGSAPSFLPGKGSTGGVAPESLTLVLSAASPLVDPRWPRIPLDC----RRWAGAPLLIS 63
Query: 131 EECGAP 136
E G P
Sbjct: 64 PETGRP 69
>gi|239750566 PREDICTED: hypothetical protein XP_002347457 [Homo
sapiens]
Length = 147
Score = 29.3 bits (64), Expect = 2.5
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 80 PAISPRTYIPGKVG---------DLILVEASLPKDSPAPLVHLSCELRVRGWKGTPLHLG 130
PA S +++PGK L+L AS D P + L C R W G PL +
Sbjct: 8 PAGSAPSFLPGKGSAGGVAPESLTLVLSAASPLVDPRWPRIPLDC----RRWAGAPLLIS 63
Query: 131 EECGAP 136
E G P
Sbjct: 64 PETGRP 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,847,573
Number of Sequences: 37866
Number of extensions: 611367
Number of successful extensions: 2304
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2233
Number of HSP's gapped (non-prelim): 112
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.