Guide to the Human Genome
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Name: LOC100289892 Sequence: fasta or formatted (147aa) NCBI GI: 239750566
Description:

PREDICTED: hypothetical protein XP_002347457

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         14           2
 C cysteine            2.7          4           1
 D aspartate           4.8          7           1
 E glutamate           2.0          3           1
 F phenylalanine       2.7          4           1
 G glycine            10.2         15           2
 H histidine           1.4          2           1
 I isoleucine          3.4          5           1
 K lysine              0.7          1           1
 L leucine            12.2         18           2
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline            10.9         16           1
 Q glutamine           1.4          2           1
 R arginine            9.5         14           2
 S serine             10.9         16           1
 T threonine           5.4          8           1
 V valine              5.4          8           2
 W tryptophan          2.7          4           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347457 
LOC100289373          1.000   PREDICTED: hypothetical protein XP_002344117 
LOC100291967          0.996   PREDICTED: similar to hCG2041645 
FOXD2                 0.025   forkhead box D2 
KIAA0644              0.018   hypothetical protein LOC9865 
OLAH                  0.018   oleoyl-ACP hydrolase isoform 2 
OLAH                  0.018   oleoyl-ACP hydrolase isoform 1 
LOC645249             0.018   PREDICTED: hypothetical protein 
MLL2                  0.018   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL4                  0.018   myeloid/lymphoid or mixed-lineage leukemia 4 
MEX3D                 0.018   ring finger and KH domain containing 1 
LOC100293001          0.014   PREDICTED: hypothetical protein 
LOC100128994          0.014   PREDICTED: hypothetical protein 
LOC100290586          0.014   PREDICTED: hypothetical protein XP_002347832 
LOC100288474          0.014   PREDICTED: hypothetical protein XP_002343609 
LOC100131482          0.014   PREDICTED: similar to hCG1643669 
LOC100131482          0.014   PREDICTED: similar to hCG1643669 
LOC100131482          0.014   PREDICTED: hypothetical protein LOC100131482 
GPR98                 0.014   G protein-coupled receptor 98 precursor 
MICALL1               0.011   molecule interacting with Rab13 
GNAS                  0.011   GNAS complex locus alex 
CA9                   0.011   carbonic anhydrase IX precursor 
GRIN2D                0.011   N-methyl-D-aspartate receptor subunit 2D precursor ...
VWCE                  0.011   von Willebrand factor C and EGF domains 
NFATC4                0.011   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC729549             0.011   PREDICTED: similar to hCG1793014 
LOC100291624          0.011   PREDICTED: hypothetical protein XP_002345876 
LOC100291029          0.011   PREDICTED: hypothetical protein XP_002347124 
LOC100289712          0.011   PREDICTED: hypothetical protein XP_002346761 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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