Guide to the Human Genome
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Name: CCDC17 Sequence: fasta or formatted (590aa) NCBI GI: 169234951
Description:

coiled-coil domain containing 17

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         62           2
 C cysteine            1.2          7           1
 D aspartate           3.6         21           1
 E glutamate           6.8         40           2
 F phenylalanine       2.5         15           1
 G glycine             8.1         48           2
 H histidine           1.2          7           2
 I isoleucine          2.2         13           1
 K lysine              0.7          4           1
 L leucine            13.2         78           2
 M methionine          1.9         11           1
 N asparagine          1.4          8           1
 P proline            11.0         65           4
 Q glutamine           6.3         37           1
 R arginine            9.8         58           2
 S serine              7.5         44           3
 T threonine           4.2         25           2
 V valine              5.3         31           2
 W tryptophan          1.7         10           1
 Y tyrosine            1.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 17 
CCDC88B               0.019   coiled-coil domain containing 88 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
KIAA1949              0.018   phostensin 
KIAA1949              0.018   phostensin 
NES                   0.017   nestin 
PCLO                  0.015   piccolo isoform 2 
PCLO                  0.015   piccolo isoform 1 
TNK2                  0.014   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.014   tyrosine kinase, non-receptor, 2 isoform 2 
CROCC                 0.014   ciliary rootlet coiled-coil 
FILIP1                0.014   filamin A interacting protein 1 
DIAPH3                0.013   diaphanous homolog 3 isoform b 
DIAPH3                0.013   diaphanous homolog 3 isoform a 
MYH7B                 0.013   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
FMNL1                 0.012   formin-like 1 
DIAPH1                0.012   diaphanous 1 isoform 2 
DIAPH1                0.012   diaphanous 1 isoform 1 
LZTS2                 0.012   leucine zipper, putative tumor suppressor 2 
NUMA1                 0.012   nuclear mitotic apparatus protein 1 
CCDC88C               0.012   DVL-binding protein DAPLE 
PLEC1                 0.011   plectin 1 isoform 11 
PLEC1                 0.011   plectin 1 isoform 10 
PLEC1                 0.011   plectin 1 isoform 8 
PLEC1                 0.011   plectin 1 isoform 7 
PLEC1                 0.011   plectin 1 isoform 6 
PLEC1                 0.011   plectin 1 isoform 3 
PLEC1                 0.011   plectin 1 isoform 2 
PLEC1                 0.011   plectin 1 isoform 1 
RAVER1                0.011   RAVER1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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