Guide to the Human Genome
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Name: LOC100289059 Sequence: fasta or formatted (216aa) NCBI GI: 239745091
Description:

PREDICTED: hypothetical protein XP_002343358

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         23           2
 C cysteine            1.9          4           1
 D aspartate           3.7          8           1
 E glutamate           3.2          7           1
 F phenylalanine       1.4          3           1
 G glycine             8.3         18           2
 H histidine           3.7          8           2
 I isoleucine          2.8          6           2
 K lysine              3.2          7           1
 L leucine             7.4         16           2
 M methionine          4.2          9           1
 N asparagine          1.9          4           1
 P proline            13.4         29           2
 Q glutamine           6.9         15           1
 R arginine            5.1         11           2
 S serine              4.6         10           1
 T threonine           7.9         17           1
 V valine              5.1         11           1
 W tryptophan          2.3          5           1
 Y tyrosine            2.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343358 
LOC100290007          0.972   PREDICTED: hypothetical protein XP_002347553 
LOC100293247          0.966   PREDICTED: hypothetical protein 
C9orf123              0.381   hypothetical protein LOC90871 
MLL3                  0.034   myeloid/lymphoid or mixed-lineage leukemia 3 
LOC284297             0.025   hypothetical protein LOC284297 
FBLN2                 0.025   fibulin 2 isoform b precursor 
FBLN2                 0.025   fibulin 2 isoform a precursor 
YLPM1                 0.025   YLP motif containing 1 
MUC2                  0.023   mucin 2 precursor 
PXK                   0.023   PX domain containing serine/threonine kinase 
RFX1                  0.023   regulatory factor X1 
VASP                  0.023   vasodilator-stimulated phosphoprotein 
LOC100287250          0.021   PREDICTED: hypothetical protein XP_002344493 
GNAS                  0.021   GNAS complex locus XLas 
MUC16                 0.018   mucin 16 
MLL2                  0.018   myeloid/lymphoid or mixed-lineage leukemia 2 
UBQLN4                0.018   ataxin-1 ubiquitin-like interacting protein 
PDE4D                 0.018   phosphodiesterase 4D isoform 1 
ANKZF1                0.018   ankyrin repeat and zinc finger domain containing 1 ...
ANKZF1                0.018   ankyrin repeat and zinc finger domain containing 1 ...
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
TBP                   0.018   TATA box binding protein 
KDM6B                 0.018   lysine (K)-specific demethylase 6B 
SAPS1                 0.018   SAPS domain family, member 1 
ARAP3                 0.018   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
SYNJ1                 0.016   synaptojanin 1 isoform c 
BAG3                  0.016   BCL2-associated athanogene 3 
RAPH1                 0.016   Ras association and pleckstrin homology domains 1 is...
BIN2                  0.016   bridging integrator 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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