Guide to the Human Genome
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Name: LOC100291967 Sequence: fasta or formatted (147aa) NCBI GI: 239756043
Description:

PREDICTED: similar to hCG2041645

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         13           2
 C cysteine            2.7          4           1
 D aspartate           4.8          7           1
 E glutamate           2.0          3           1
 F phenylalanine       2.7          4           1
 G glycine            10.2         15           2
 H histidine           1.4          2           1
 I isoleucine          3.4          5           1
 K lysine              0.7          1           1
 L leucine            12.2         18           2
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline            10.9         16           1
 Q glutamine           1.4          2           1
 R arginine            9.5         14           2
 S serine             10.9         16           1
 T threonine           6.1          9           1
 V valine              5.4          8           2
 W tryptophan          2.7          4           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2041645 
LOC100289892          0.996   PREDICTED: hypothetical protein XP_002347457 
LOC100289373          0.996   PREDICTED: hypothetical protein XP_002344117 
FOXD2                 0.021   forkhead box D2 
KIAA0644              0.018   hypothetical protein LOC9865 
OLAH                  0.018   oleoyl-ACP hydrolase isoform 2 
OLAH                  0.018   oleoyl-ACP hydrolase isoform 1 
LOC645249             0.018   PREDICTED: hypothetical protein 
MLL2                  0.018   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL4                  0.018   myeloid/lymphoid or mixed-lineage leukemia 4 
MEX3D                 0.018   ring finger and KH domain containing 1 
LOC100293001          0.014   PREDICTED: hypothetical protein 
LOC100128994          0.014   PREDICTED: hypothetical protein 
LOC100290586          0.014   PREDICTED: hypothetical protein XP_002347832 
LOC100288474          0.014   PREDICTED: hypothetical protein XP_002343609 
LOC100131482          0.014   PREDICTED: similar to hCG1643669 
LOC100131482          0.014   PREDICTED: similar to hCG1643669 
LOC100131482          0.014   PREDICTED: hypothetical protein LOC100131482 
MICALL1               0.011   molecule interacting with Rab13 
GNAS                  0.011   GNAS complex locus alex 
LOC729549             0.011   PREDICTED: similar to hCG1793014 
CA9                   0.011   carbonic anhydrase IX precursor 
CD207                 0.011   CD207 antigen, langerin 
NFATC4                0.011   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC729549             0.011   PREDICTED: similar to hCG1793014 
LOC100291029          0.011   PREDICTED: hypothetical protein XP_002347124 
LOC729549             0.011   PREDICTED: similar to UNCoordinated family member (...
LOC644538             0.007   PREDICTED: hypothetical protein 
LOC100293578          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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