Guide to the Human Genome
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Name: LOC100293001 Sequence: fasta or formatted (207aa) NCBI GI: 239756886
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         10           1
 C cysteine            2.4          5           1
 D aspartate           1.0          2           1
 E glutamate           4.8         10           2
 F phenylalanine       1.9          4           1
 G glycine             7.2         15           1
 H histidine           4.3          9           1
 I isoleucine          4.3          9           1
 K lysine              3.9          8           1
 L leucine            11.1         23           2
 M methionine          0.5          1           1
 N asparagine          1.9          4           2
 P proline            13.0         27           4
 Q glutamine           6.8         14           2
 R arginine            8.7         18           2
 S serine              8.2         17           2
 T threonine           5.3         11           2
 V valine              7.2         15           2
 W tryptophan          1.4          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290586          1.000   PREDICTED: hypothetical protein XP_002347832 
LOC100288474          1.000   PREDICTED: hypothetical protein XP_002343609 
LOC728503             0.027   PREDICTED: hypothetical protein 
LOC728503             0.027   PREDICTED: hypothetical protein 
LOC728503             0.027   PREDICTED: hypothetical protein 
CCDC17                0.025   coiled-coil domain containing 17 
SAP130                0.020   Sin3A-associated protein, 130kDa isoform b 
SAP130                0.020   Sin3A-associated protein, 130kDa isoform a 
CABYR                 0.017   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.017   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.017   calcium-binding tyrosine phosphorylation-regulated p...
QRICH2                0.017   glutamine rich 2 
TAF6                  0.015   TBP-associated factor 6 isoform gamma 
SH2D6                 0.015   SH2 domain containing 6 
CABYR                 0.015   calcium-binding tyrosine phosphorylation-regulated p...
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
KIAA1462              0.015   hypothetical protein LOC57608 
LOC100293247          0.012   PREDICTED: hypothetical protein 
LOC100290007          0.012   PREDICTED: hypothetical protein XP_002347553 
LOC100289059          0.012   PREDICTED: hypothetical protein XP_002343358 
USP36                 0.012   ubiquitin specific peptidase 36 
TNRC18                0.012   trinucleotide repeat containing 18 
KLHDC7A               0.012   kelch domain containing 7A 
CABYR                 0.012   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.012   calcium-binding tyrosine phosphorylation-regulated p...
CAMTA2                0.012   calmodulin binding transcription activator 2 
MYO15A                0.010   myosin XV 
LOC100291967          0.010   PREDICTED: similar to hCG2041645 
LOC100289892          0.010   PREDICTED: hypothetical protein XP_002347457 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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