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Search of human proteins with 239751227
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751227 PREDICTED: hypothetical protein XP_002347761 [Homo
sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751227 PREDICTED: hypothetical protein XP_002347761 [Homo ... 599 e-171
gi|48255913 tripartite motif-containing 16 [Homo sapiens] 371 e-103
gi|17402909 tripartite motif protein TRIM29 [Homo sapiens] 99 5e-21
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 83 3e-16
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 80 2e-15
gi|223890259 midline 2 isoform 2 [Homo sapiens] 59 5e-09
gi|223890257 midline 2 isoform 1 [Homo sapiens] 59 5e-09
gi|148833499 midline 1 [Homo sapiens] 59 6e-09
gi|4557753 midline 1 [Homo sapiens] 59 6e-09
gi|15451852 midline 1 [Homo sapiens] 59 6e-09
gi|148596968 tripartite motif-containing 8 [Homo sapiens] 52 8e-07
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 49 4e-06
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 49 4e-06
gi|28195390 tripartite motif-containing 42 [Homo sapiens] 49 5e-06
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 47 2e-05
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 47 2e-05
gi|224548923 tripartite motif-containing 45 isoform 2 [Homo sapi... 44 2e-04
gi|224548921 tripartite motif-containing 45 isoform 1 [Homo sapi... 44 2e-04
gi|5730009 ret finger protein [Homo sapiens] 43 3e-04
gi|164419758 bromodomain containing 2 [Homo sapiens] 43 3e-04
gi|4826806 bromodomain containing 2 [Homo sapiens] 43 3e-04
gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens] 41 0.001
gi|51477687 tripartite motif protein 34 isoform 1 [Homo sapiens] 41 0.001
gi|18087807 tripartite motif protein 34 isoform 1 [Homo sapiens] 41 0.001
gi|51477690 tripartite motif-containing 6 and tripartite motif-c... 41 0.001
gi|47174859 tripartite motif-containing 46 [Homo sapiens] 41 0.001
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 40 0.002
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 40 0.002
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 40 0.002
gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens] 40 0.002
>gi|239751227 PREDICTED: hypothetical protein XP_002347761 [Homo
sapiens]
Length = 282
Score = 599 bits (1544), Expect = e-171
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MAELDLMAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDS 60
MAELDLMAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDS
Sbjct: 1 MAELDLMAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDS 60
Query: 61 DSAEQGDPAGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLT 120
DSAEQGDPAGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLT
Sbjct: 61 DSAEQGDPAGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLT 120
Query: 121 EPVKDHNWRYCPAHHSPLSAFCCPDQQCICQDCCQEHSGHTIVSLDAARRDKEVSAWGPF 180
EPVKDHNWRYCPAHHSPLSAFCCPDQQCICQDCCQEHSGHTIVSLDAARRDKEVSAWGPF
Sbjct: 121 EPVKDHNWRYCPAHHSPLSAFCCPDQQCICQDCCQEHSGHTIVSLDAARRDKEVSAWGPF 180
Query: 181 IHLGEGDANESLFPAREATCQTVSSVPRSANSREKPLTLDAPWVPPYGPAAADCFNTFFC 240
IHLGEGDANESLFPAREATCQTVSSVPRSANSREKPLTLDAPWVPPYGPAAADCFNTFFC
Sbjct: 181 IHLGEGDANESLFPAREATCQTVSSVPRSANSREKPLTLDAPWVPPYGPAAADCFNTFFC 240
Query: 241 PCCLDAVFVLERRVLCLQLLPSPGGLEFPQSSVENGETVYAL 282
PCCLDAVFVLERRVLCLQLLPSPGGLEFPQSSVENGETVYAL
Sbjct: 241 PCCLDAVFVLERRVLCLQLLPSPGGLEFPQSSVENGETVYAL 282
>gi|48255913 tripartite motif-containing 16 [Homo sapiens]
Length = 564
Score = 371 bits (952), Expect = e-103
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MAELDLMAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDS 60
MAELDLMAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDS
Sbjct: 1 MAELDLMAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDS 60
Query: 61 DSAEQGDPAGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLT 120
DSAEQGDPAGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLT
Sbjct: 61 DSAEQGDPAGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLT 120
Query: 121 EPVKDHNWRYCPAHHSPLSAFCCPDQQCICQDCCQEHSGHTIVSLDAARRDKE 173
EPVKDHNWRYCPAHHSPLSAFCCPDQQCICQDCCQEHSGHTIVSLDAARRDKE
Sbjct: 121 EPVKDHNWRYCPAHHSPLSAFCCPDQQCICQDCCQEHSGHTIVSLDAARRDKE 173
>gi|17402909 tripartite motif protein TRIM29 [Homo sapiens]
Length = 588
Score = 98.6 bits (244), Expect = 5e-21
Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 73 KEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWRYCP 132
+EVLCD C+ + + KAVKSCL C ++CE HL+PH + H L EP++D R CP
Sbjct: 169 EEVLCDSCIGNKQ--KAVKSCLVCQASFCELHLKPHLEGAAFRDHQLLEPIRDFEARKCP 226
Query: 133 AHHSPLSAFCCPDQQCICQDCC-QEHSGHTIVSLDAARRDKE 173
H + FC DQ CIC C QEH H+ V+++ A+ +KE
Sbjct: 227 VHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKE 268
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 82.8 bits (203), Expect = 3e-16
Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 30/166 (18%)
Query: 9 PGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDP 68
PGP P +P AP SA P E + A + P
Sbjct: 89 PGPAPALAPEPSAP-------------SALP--------------SVPEPSAPCAPEPWP 121
Query: 69 AGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNW 128
AGE + V CD C + + A SCL+C+ ++C HL PH+ + L+ H L P++
Sbjct: 122 AGE-EPVRCDACPEGAA-LPAALSCLSCLASFCPAHLGPHERSPALRGHRLVPPLRRLEE 179
Query: 129 RYCPAHHSPLSAFCCPDQQCICQDC-CQEHSGHTIVSLDAARRDKE 173
CP H PL +C ++ C+C+ C QEH GH +V L+ R +E
Sbjct: 180 SLCPRHLRPLERYCRAERVCLCEACAAQEHRGHELVPLEQERALQE 225
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 80.5 bits (197), Expect = 2e-15
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 74 EVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWRYCPA 133
+V CD CL + AVK+CL CM ++C+EHLQPH + Q H L PV+D R C
Sbjct: 104 QVACDHCLKEA----AVKTCLVCMASFCQEHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQ 159
Query: 134 HHSPLSAFCCPDQQCICQDCCQEHSGHTIVSLDAARRDKEVS 175
H+ FC +CIC C EH + SL A D E +
Sbjct: 160 HNRLREFFCPEHSECICHICLVEHKTCSPASLSQASADLEAT 201
>gi|223890259 midline 2 isoform 2 [Homo sapiens]
Length = 705
Score = 58.9 bits (141), Expect = 5e-09
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 69 AGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIK-LQSHLLTEPVKDHN 127
A + + C FC D R AVK+C+TC V+YC+ L+ N K SH L EPV D +
Sbjct: 131 AMSSERIACQFCEQDPPR-DAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVPDTH 189
Query: 128 WR--YCPAH-HSPLSAFCCPDQQCICQDC--CQEHSGHTIVSLD 166
R C H + ++ +C D Q IC C H H + SL+
Sbjct: 190 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLN 233
>gi|223890257 midline 2 isoform 1 [Homo sapiens]
Length = 735
Score = 58.9 bits (141), Expect = 5e-09
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 69 AGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIK-LQSHLLTEPVKDHN 127
A + + C FC D R AVK+C+TC V+YC+ L+ N K SH L EPV D +
Sbjct: 131 AMSSERIACQFCEQDPPR-DAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVPDTH 189
Query: 128 WR--YCPAH-HSPLSAFCCPDQQCICQDC--CQEHSGHTIVSLD 166
R C H + ++ +C D Q IC C H H + SL+
Sbjct: 190 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLN 233
>gi|148833499 midline 1 [Homo sapiens]
Length = 667
Score = 58.5 bits (140), Expect = 6e-09
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 73 KEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIK-LQSHLLTEPVKDHNWR-- 129
++VLC FC D + AVK+C+TC V+YC+E L+ N K H L EP+ D + R
Sbjct: 115 EKVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGL 173
Query: 130 YCPAHH-SPLSAFCCPDQQCICQDC--CQEHSGHTIVSLDAARRDK 172
C H ++ +C D Q IC C H H + +L + R DK
Sbjct: 174 MCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAAL-SERYDK 218
>gi|4557753 midline 1 [Homo sapiens]
Length = 667
Score = 58.5 bits (140), Expect = 6e-09
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 73 KEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIK-LQSHLLTEPVKDHNWR-- 129
++VLC FC D + AVK+C+TC V+YC+E L+ N K H L EP+ D + R
Sbjct: 115 EKVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGL 173
Query: 130 YCPAHH-SPLSAFCCPDQQCICQDC--CQEHSGHTIVSLDAARRDK 172
C H ++ +C D Q IC C H H + +L + R DK
Sbjct: 174 MCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAAL-SERYDK 218
>gi|15451852 midline 1 [Homo sapiens]
Length = 667
Score = 58.5 bits (140), Expect = 6e-09
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 73 KEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIK-LQSHLLTEPVKDHNWR-- 129
++VLC FC D + AVK+C+TC V+YC+E L+ N K H L EP+ D + R
Sbjct: 115 EKVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGL 173
Query: 130 YCPAHH-SPLSAFCCPDQQCICQDC--CQEHSGHTIVSLDAARRDK 172
C H ++ +C D Q IC C H H + +L + R DK
Sbjct: 174 MCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAAL-SERYDK 218
>gi|148596968 tripartite motif-containing 8 [Homo sapiens]
Length = 551
Score = 51.6 bits (122), Expect = 8e-07
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 77 CDFCLDDTRR---VKAVKSCLTCMVNYCEEHLQPH-QVNIKLQSHLLTEPVKDHNWRYCP 132
C FC RR + A K CL C C+ H+Q H Q + HLL E W CP
Sbjct: 92 CVFC----RRGPPLPAQKVCLRCEAPCCQSHVQTHLQQPSTARGHLLVEADDVRAWS-CP 146
Query: 133 AHHSPLSAFCCPDQQCICQDCCQ---EHSGHTIVSLDAARRD 171
H++ C +Q +CQ CC H GH++ ++ R +
Sbjct: 147 QHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDVEIRRNE 188
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 49.3 bits (116), Expect = 4e-06
Identities = 48/188 (25%), Positives = 68/188 (36%), Gaps = 41/188 (21%)
Query: 11 PLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDPAG 70
P P A PPAP + P P++ A P E + + E D ++AE G P
Sbjct: 56 PPPPAAQPPPAPAPAAAQGPPPEALPAEPAAEAE-AEAAAAAAEPGFDDEEAAEGGGPGA 114
Query: 71 EGKEVLCDFCLDDTRRVKAV-------KSCLTCMVNY----------------CEEHLQP 107
E EV C CL +A +SC C+ +Y C E L P
Sbjct: 115 E--EVECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNP 172
Query: 108 HQVNIKLQSHLLTEP----------VKDHNWRYCPA---HHSPLSAFC--CPDQQCICQD 152
H + + L L D + R+CPA ++ ++ C CP C +
Sbjct: 173 HDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREG 232
Query: 153 CCQEHSGH 160
C E H
Sbjct: 233 CQTEFCYH 240
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 49.3 bits (116), Expect = 4e-06
Identities = 48/188 (25%), Positives = 68/188 (36%), Gaps = 41/188 (21%)
Query: 11 PLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDPAG 70
P P A PPAP + P P++ A P E + + E D ++AE G P
Sbjct: 56 PPPPAAQPPPAPAPAAAQGPPPEALPAEPAAEAE-AEAAAAAAEPGFDDEEAAEGGGPGA 114
Query: 71 EGKEVLCDFCLDDTRRVKAV-------KSCLTCMVNY----------------CEEHLQP 107
E EV C CL +A +SC C+ +Y C E L P
Sbjct: 115 E--EVECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNP 172
Query: 108 HQVNIKLQSHLLTEP----------VKDHNWRYCPA---HHSPLSAFC--CPDQQCICQD 152
H + + L L D + R+CPA ++ ++ C CP C +
Sbjct: 173 HDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREG 232
Query: 153 CCQEHSGH 160
C E H
Sbjct: 233 CQTEFCYH 240
>gi|28195390 tripartite motif-containing 42 [Homo sapiens]
Length = 723
Score = 48.9 bits (115), Expect = 5e-06
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 75 VLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWRYCPAH 134
+LC C + RR+ A K C+TC +N C + L+ ++ +Q H+ + + H
Sbjct: 236 ILCQVCRN--RRI-AYKRCITCRLNLCNDCLKAFHSDVAMQDHVFVDTSAEEQDEKICIH 292
Query: 135 H--SPLSAFCCPDQQCICQDC-CQEHSGHTIVSLDAARRDKEVS 175
H S + +C D + +C C H+GH +SL A ++ S
Sbjct: 293 HPSSRIIEYCRNDNKLLCTFCKFSFHNGHDTISLIDACSERAAS 336
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 47.0 bits (110), Expect = 2e-05
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 93 CLTCMVNYCEEHLQPHQ-----VNIKLQSHLLTEPVKDHNWRYCPAHHSPLSAFCCPDQQ 147
C C L+P++ V I Q + ++D + CP HH LS FC DQ+
Sbjct: 66 CPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDES--LCPQHHEALSLFCYEDQE 123
Query: 148 CICQDCC--QEHSGHTIVSLDAARRD 171
+C C H HT+V LD A ++
Sbjct: 124 AVCLICAISHTHRAHTVVPLDDATQE 149
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 47.0 bits (110), Expect = 2e-05
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 93 CLTCMVNYCEEHLQPHQ-----VNIKLQSHLLTEPVKDHNWRYCPAHHSPLSAFCCPDQQ 147
C C L+P++ V I Q + ++D + CP HH LS FC DQ+
Sbjct: 66 CPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDES--LCPQHHEALSLFCYEDQE 123
Query: 148 CICQDCC--QEHSGHTIVSLDAARRD 171
+C C H HT+V LD A ++
Sbjct: 124 AVCLICAISHTHRAHTVVPLDDATQE 149
>gi|224548923 tripartite motif-containing 45 isoform 2 [Homo
sapiens]
Length = 562
Score = 43.9 bits (102), Expect = 2e-04
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 70 GEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWR 129
GEG+ ++CD C D R V+ K C TC N C Q H+ K H + + +KD
Sbjct: 128 GEGQGLVCDLCND--REVE--KRCQTCKANLCHFCCQAHRRQKKTTYHTMVD-LKDLKGY 182
Query: 130 -------YCPAHHS-PLSAFCCPDQQCICQDC-CQEHSGH 160
CP H + L FC + +CQDC EH H
Sbjct: 183 SRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREH 222
>gi|224548921 tripartite motif-containing 45 isoform 1 [Homo
sapiens]
Length = 580
Score = 43.9 bits (102), Expect = 2e-04
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 70 GEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWR 129
GEG+ ++CD C D R V+ K C TC N C Q H+ K H + + +KD
Sbjct: 128 GEGQGLVCDLCND--REVE--KRCQTCKANLCHFCCQAHRRQKKTTYHTMVD-LKDLKGY 182
Query: 130 -------YCPAHHS-PLSAFCCPDQQCICQDC-CQEHSGH 160
CP H + L FC + +CQDC EH H
Sbjct: 183 SRIGKPILCPVHPAEELRLFCEFCDRPVCQDCVVGEHREH 222
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 43.1 bits (100), Expect = 3e-04
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 92 SCLTCMVNYCEEHLQP--HQVNI-KLQSHLLTEPVKDHNWRY--CPAHHSPLSAFCCPDQ 146
SC C + + H++P H N+ +L L TE C H PL +C DQ
Sbjct: 52 SCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQ 111
Query: 147 QCICQDC--CQEHSGHTIVSLDAA 168
IC C +EH GH+++ L+ A
Sbjct: 112 MPICVVCDRSREHRGHSVLPLEEA 135
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 43.1 bits (100), Expect = 3e-04
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 7 MAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQ 65
+ PGPLP +TA PP S S S +S S S EEE+ E+ E E + SDS E+
Sbjct: 458 LEPGPLPVSTAMPPGLAKSSSESSSEESSSESSSEEEE-EEDEEDEEEEESESSDSEEE 515
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 43.1 bits (100), Expect = 3e-04
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 7 MAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQ 65
+ PGPLP +TA PP S S S +S S S EEE+ E+ E E + SDS E+
Sbjct: 458 LEPGPLPVSTAMPPGLAKSSSESSSEESSSESSSEEEE-EEDEEDEEEEESESSDSEEE 515
>gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens]
Length = 270
Score = 41.2 bits (95), Expect = 0.001
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 92 SCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWR---YCPAHHSPLSAFCCPDQQC 148
SC C ++Y EHLQ +Q + L + N + C H L FC D++
Sbjct: 55 SCPVCGISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKV 114
Query: 149 ICQDC--CQEHSGHTIV 163
IC C QEH GH V
Sbjct: 115 ICWLCERSQEHRGHHTV 131
>gi|51477687 tripartite motif protein 34 isoform 1 [Homo sapiens]
Length = 488
Score = 41.2 bits (95), Expect = 0.001
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 92 SCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWR---YCPAHHSPLSAFCCPDQQC 148
SC C ++Y EHLQ +Q + L + N + C H L FC D++
Sbjct: 55 SCPVCGISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKV 114
Query: 149 ICQDC--CQEHSGHTIV 163
IC C QEH GH V
Sbjct: 115 ICWLCERSQEHRGHHTV 131
>gi|18087807 tripartite motif protein 34 isoform 1 [Homo sapiens]
Length = 488
Score = 41.2 bits (95), Expect = 0.001
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 92 SCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWR---YCPAHHSPLSAFCCPDQQC 148
SC C ++Y EHLQ +Q + L + N + C H L FC D++
Sbjct: 55 SCPVCGISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKV 114
Query: 149 ICQDC--CQEHSGHTIV 163
IC C QEH GH V
Sbjct: 115 ICWLCERSQEHRGHHTV 131
>gi|51477690 tripartite motif-containing 6 and tripartite
motif-containing 34 [Homo sapiens]
Length = 842
Score = 41.2 bits (95), Expect = 0.001
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 92 SCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWR---YCPAHHSPLSAFCCPDQQC 148
SC C ++Y EHLQ +Q + L + N + C H L FC D++
Sbjct: 409 SCPVCGISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKV 468
Query: 149 ICQDC--CQEHSGHTIV 163
IC C QEH GH V
Sbjct: 469 ICWLCERSQEHRGHHTV 485
Score = 38.5 bits (88), Expect = 0.007
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 77 CDFCLDDTRRVKAV-----KSCLTCMVNYCEEHLQP--HQVNI-KLQSHLLTEPVKDHNW 128
C C+ R + +SC C +Y +L+P H NI + ++ P K
Sbjct: 63 CQACITPNGRESVIGQEGERSCPVCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQLKA 122
Query: 129 RYCPAHHSPLSAFCCPDQQCICQDC--CQEHSGH 160
C H L FC D + IC C QEH GH
Sbjct: 123 VLCADHGEKLQLFCQEDGKVICWLCERSQEHRGH 156
>gi|47174859 tripartite motif-containing 46 [Homo sapiens]
Length = 759
Score = 41.2 bits (95), Expect = 0.001
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 72 GKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQP-HQVNIKLQSHLLTEPVKDHNWR- 129
G +LC C ++A K C C +C E + H + H T P +
Sbjct: 167 GGAILCQLCKPPP--LEATKGCTECRATFCNECFKLFHPWGTQKAQHEPTLPTLSFRPKG 224
Query: 130 -YCPAHHSPLSAFCCPDQQCICQDC--CQEHSGHTIVSLDAA 168
CP H ++ +C Q+ +CQ C + HSGH I + +A
Sbjct: 225 LMCPDHKEEVTHYCKTCQRLVCQLCRVRRTHSGHKITPVLSA 266
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 40.4 bits (93), Expect = 0.002
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 78 DFCLDDTRRV----KAVKSCLTCMVNYCEEHLQPHQVNIKL-QSHLLTEPVKDHNWRYCP 132
+FC + RR + +C C + +L+P++ K+ + P CP
Sbjct: 34 NFCRECIRRCWGQPEGPYACPECRELSPQRNLRPNRPLAKMAEMARRLHPPSPVPQGVCP 93
Query: 133 AHHSPLSAFCCPDQQCICQDC--CQEHSGHTIVSLDAARRDKEVSAWGPFIHLGEGDANE 190
AH PL+AFC + + +C C EH H + L A D + HL + +
Sbjct: 94 AHREPLAAFCGDELRLLCAACERSGEHWAHRVRPLQDAAEDLKAKLEKSLEHLRKQMQDA 153
Query: 191 SLFPAR-EATC 200
LF A+ + TC
Sbjct: 154 LLFQAQADETC 164
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 77 CDFCLDDTRRV----KAVKSCLTCMVNYCEEHLQP--HQVNIKLQSHLLTEPVKDHNWRY 130
C CL + K SC C ++Y E+++P H NI + + + +
Sbjct: 35 CQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDH 94
Query: 131 CPAHHSPLSAFCCPDQQCICQDC--CQEHSGH 160
C H L FC D + IC C QEH GH
Sbjct: 95 CARHGEKLLLFCQEDGKVICWLCERSQEHRGH 126
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 77 CDFCLDDTRRV----KAVKSCLTCMVNYCEEHLQP--HQVNIKLQSHLLTEPVKDHNWRY 130
C CL + K SC C ++Y E+++P H NI + + + +
Sbjct: 35 CQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDH 94
Query: 131 CPAHHSPLSAFCCPDQQCICQDC--CQEHSGH 160
C H L FC D + IC C QEH GH
Sbjct: 95 CARHGEKLLLFCQEDGKVICWLCERSQEHRGH 126
>gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens]
Length = 493
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 19/112 (16%)
Query: 67 DPAGEGKEVLC--DFCLDDTRRVKAVKSCLTCMVNYCEEHLQP------HQVNIKLQSHL 118
DP + + C +FC R V+ TC V C++ P H +N L L
Sbjct: 26 DPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPV--CKDRASPADLRTNHTLN-NLVEKL 82
Query: 119 LTEPVKDHNW------RYCPAHHSPLSAFCCPDQQCICQDCCQE--HSGHTI 162
L E + W R C H LS FC D++ +C C + H GH +
Sbjct: 83 LREEAEGARWTSYRFSRVCRLHRGQLSLFCLEDKELLCCSCQADPRHQGHRV 134
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,947,345
Number of Sequences: 37866
Number of extensions: 752743
Number of successful extensions: 7967
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 7009
Number of HSP's gapped (non-prelim): 1137
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.