Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290641 Sequence: fasta or formatted (208aa) NCBI GI: 239751211
Description:

PREDICTED: hypothetical protein XP_002347748

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         16           2
 C cysteine            2.4          5           1
 D aspartate           4.3          9           1
 E glutamate           8.7         18           2
 F phenylalanine       3.4          7           1
 G glycine            20.2         42           3
 H histidine           1.0          2           1
 I isoleucine          2.4          5           2
 K lysine              1.9          4           1
 L leucine            11.5         24           2
 M methionine          1.4          3           1
 N asparagine          0.0          0           0
 P proline             4.3          9           1
 Q glutamine           1.9          4           1
 R arginine           10.6         22           3
 S serine              8.2         17           2
 T threonine           2.4          5           1
 V valine              5.3         11           1
 W tryptophan          2.4          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347748 
LOC100291611          1.000   PREDICTED: hypothetical protein XP_002345022 
LOC100289146          0.679   PREDICTED: hypothetical protein XP_002343519 
COL24A1               0.037   collagen, type XXIV, alpha 1 
LOC100292655          0.035   PREDICTED: similar to armadillo repeat containing, ...
COL9A3                0.032   alpha 3 type IX collagen 
KRT9                  0.030   keratin 9 
CLIC6                 0.030   chloride intracellular channel 6 
APOB48R               0.027   apolipoprotein B48 receptor 
RPGR                  0.027   retinitis pigmentosa GTPase regulator isoform C [Hom...
HRNR                  0.025   hornerin 
OTUD5                 0.025   OTU domain containing 5 isoform a 
OTUD5                 0.025   OTU domain containing 5 isoform b 
OTUD5                 0.025   OTU domain containing 5 isoform b 
KRT1                  0.025   keratin 1 
LOC100291596          0.025   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.025   PREDICTED: hypothetical protein 
LOC100288068          0.025   PREDICTED: hypothetical protein XP_002343259 
SRF                   0.022   serum response factor (c-fos serum response element-b...
KRT2                  0.022   keratin 2 
KRT10                 0.020   keratin 10 
LOC100294413          0.020   PREDICTED: hypothetical protein 
LOR                   0.020   loricrin 
ADCY5                 0.020   adenylate cyclase 5 
ADRA2C                0.020   alpha-2C-adrenergic receptor 
HOXA10                0.020   homeobox A10 isoform a 
MAP3K6                0.020   mitogen-activated protein kinase kinase kinase 6 [Ho...
KRT76                 0.017   keratin 76 
COL4A1                0.017   alpha 1 type IV collagen preproprotein 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press