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Search of human proteins with 239751105
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo
sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo ... 302 5e-83
gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo ... 300 3e-82
gi|239756489 PREDICTED: hypothetical protein [Homo sapiens] 139 1e-33
gi|239756617 PREDICTED: hypothetical protein [Homo sapiens] 128 2e-30
gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo ... 107 3e-24
gi|4505845 phospholipase A2, group X [Homo sapiens] 88 2e-18
gi|7657461 phospholipase A2, group IIE [Homo sapiens] 51 3e-07
gi|145553989 phospholipase A2, group IIF [Homo sapiens] 40 6e-04
gi|239915991 phospholipase A2, group IIA precursor [Homo sapiens] 40 8e-04
gi|239915987 phospholipase A2, group IIA precursor [Homo sapiens] 40 8e-04
gi|239915985 phospholipase A2, group IIA precursor [Homo sapiens] 40 8e-04
gi|4505849 phospholipase A2, group IIA precursor [Homo sapiens] 40 8e-04
gi|4505853 phospholipase A2, group V precursor [Homo sapiens] 38 0.002
gi|6912596 phospholipase A2, group IID [Homo sapiens] 34 0.034
gi|149158711 hypothetical protein LOC56673 [Homo sapiens] 33 0.075
gi|4505847 phospholipase A2 group IB [Homo sapiens] 32 0.13
gi|24497517 homeobox A5 [Homo sapiens] 32 0.17
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 32 0.17
gi|223029412 otoconin 90 [Homo sapiens] 31 0.37
gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens] 31 0.37
gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens] 31 0.37
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 30 0.49
gi|61744471 low density lipoprotein receptor-related protein 8 i... 30 0.63
gi|65301119 low density lipoprotein receptor-related protein 8 i... 30 0.63
gi|65301164 very low density lipoprotein receptor isoform b [Hom... 30 0.63
gi|65301167 very low density lipoprotein receptor isoform a [Hom... 30 0.63
gi|4557665 insulin-like growth factor 1 receptor precursor [Homo... 30 0.83
gi|61744467 low density lipoprotein receptor-related protein 8 i... 30 0.83
gi|66082554 low density lipoprotein receptor-related protein 8 i... 30 0.83
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 30 0.83
>gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo
sapiens]
Length = 138
Score = 302 bits (774), Expect = 5e-83
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTRAEEAGCSPKTERY 60
MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTRAEEAGCSPKTERY
Sbjct: 1 MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTRAEEAGCSPKTERY 60
Query: 61 SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE 120
SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE
Sbjct: 61 SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE 120
Query: 121 ILPEYGVINPAVHYCTLP 138
ILPEYGVINPAVHYCTLP
Sbjct: 121 ILPEYGVINPAVHYCTLP 138
>gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo
sapiens]
Length = 138
Score = 300 bits (767), Expect = 3e-82
Identities = 137/138 (99%), Positives = 137/138 (99%)
Query: 1 MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTRAEEAGCSPKTERY 60
MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYT AEEAGCSPKTERY
Sbjct: 1 MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKTERY 60
Query: 61 SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE 120
SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE
Sbjct: 61 SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE 120
Query: 121 ILPEYGVINPAVHYCTLP 138
ILPEYGVINPAVHYCTLP
Sbjct: 121 ILPEYGVINPAVHYCTLP 138
>gi|239756489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 139 bits (349), Expect = 1e-33
Identities = 65/72 (90%), Positives = 69/72 (95%)
Query: 67 QSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYG 126
+ ++ V+CEKPDLTNSSQLTPSEAEDCSSSD SCVRPDSQSEADAGTETISHREILPEYG
Sbjct: 6 RKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYG 65
Query: 127 VINPAVHYCTLP 138
VINPAVHYCTLP
Sbjct: 66 VINPAVHYCTLP 77
>gi|239756617 PREDICTED: hypothetical protein [Homo sapiens]
Length = 63
Score = 128 bits (321), Expect = 2e-30
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 78 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 137
DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL
Sbjct: 3 DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 62
Query: 138 P 138
P
Sbjct: 63 P 63
>gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo
sapiens]
Length = 58
Score = 107 bits (267), Expect = 3e-24
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 89 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 138
EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 9 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
>gi|4505845 phospholipase A2, group X [Homo sapiens]
Length = 165
Score = 88.2 bits (217), Expect = 2e-18
Identities = 35/35 (100%), Positives = 35/35 (100%)
Query: 37 CCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLC 71
CCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLC
Sbjct: 84 CCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLC 118
>gi|7657461 phospholipase A2, group IIE [Homo sapiens]
Length = 142
Score = 51.2 bits (121), Expect = 3e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 37 CCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLC 71
CCH HDCCY R E+ GC PK E+Y + + + C
Sbjct: 61 CCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFC 95
>gi|145553989 phospholipase A2, group IIF [Homo sapiens]
Length = 211
Score = 40.0 bits (92), Expect = 6e-04
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 37 CCHGHDCCYTRAEEAGCSPKTERYSWQCVNQS-VLCVRCEKPD 78
CCH HDCCY + GC P + Y N + ++C K +
Sbjct: 106 CCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIVCSDLNKTE 148
>gi|239915991 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 39.7 bits (91), Expect = 8e-04
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 34 TRECCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCVR 73
T CC HDCCY R E+ GC K Y + + C +
Sbjct: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99
>gi|239915987 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 39.7 bits (91), Expect = 8e-04
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 34 TRECCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCVR 73
T CC HDCCY R E+ GC K Y + + C +
Sbjct: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99
>gi|239915985 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 39.7 bits (91), Expect = 8e-04
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 34 TRECCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCVR 73
T CC HDCCY R E+ GC K Y + + C +
Sbjct: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99
>gi|4505849 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 39.7 bits (91), Expect = 8e-04
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 34 TRECCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCVR 73
T CC HDCCY R E+ GC K Y + + C +
Sbjct: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99
>gi|4505853 phospholipase A2, group V precursor [Homo sapiens]
Length = 138
Score = 38.1 bits (87), Expect = 0.002
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 37 CCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLC 71
CC HD CY R EE GC+ +T+ Y ++ V C
Sbjct: 63 CCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTC 97
>gi|6912596 phospholipase A2, group IID [Homo sapiens]
Length = 145
Score = 34.3 bits (77), Expect = 0.034
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 37 CCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLC 71
CC HDCCY + GCS + Y + ++ C
Sbjct: 63 CCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHC 97
>gi|149158711 hypothetical protein LOC56673 [Homo sapiens]
Length = 467
Score = 33.1 bits (74), Expect = 0.075
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Query: 7 PRPDHLMEVPLVLGP---SLSTCYQRGQLYTRECCHGHDCCYTRAEE--AGCSPKTERYS 61
PRP H +LGP ++ + CH H CC + GC P +
Sbjct: 234 PRPLHWAPCCSLLGPITGRITNELPPDAPFLCPLCHHHACCQLLCQGCLCGCPPCGTTW- 292
Query: 62 WQCVNQSVLCVRCEKPDLTNSSQLTPSEAED------------CSSSDSSCVRPDSQSEA 109
W S + R E P+L ++QL P E SSS SSC + +++
Sbjct: 293 WPLTRTSEVMAR-ELPELEPTAQLLPLEGPKEEKVAMHAPLAVSSSSSSSCEQDGVENDL 351
Query: 110 DAG 112
+ G
Sbjct: 352 EMG 354
>gi|4505847 phospholipase A2 group IB [Homo sapiens]
Length = 148
Score = 32.3 bits (72), Expect = 0.13
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 36 ECCHGHDCCYTRAEEAGC------SPKTERYSWQCVNQSVLC 71
+CC HD CY +A++ +P T YS+ C ++ C
Sbjct: 65 KCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITC 106
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 32.0 bits (71), Expect = 0.17
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 48 AEEAGCSPKTERYSWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQS 107
A A +P RYS Q +PD S + PS D + + S +
Sbjct: 74 AASASAAPAEPRYS-----QPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGA 128
Query: 108 EADAGTETISHRE 120
ADAG+ IS RE
Sbjct: 129 SADAGSTHISSRE 141
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 32.0 bits (71), Expect = 0.17
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 35 RECCHGHDCCYTRAEEAGCSPKTERYSW--QCVNQSVLCVRCEKPDLTNSSQLTPSEAED 92
+ CC CC +GC + S C +QS C C SS S +
Sbjct: 162 KPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKP 221
Query: 93 CSSSDSSCV 101
CSS S CV
Sbjct: 222 CSSQSSCCV 230
>gi|223029412 otoconin 90 [Homo sapiens]
Length = 477
Score = 30.8 bits (68), Expect = 0.37
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 26 CYQRGQLYTRE----CCHGHDCCYTRAEEAGCSPKTERYSWQ---CVNQSVLC---VRCE 75
C Q G+ R+ CC H CC + GC ER W CV+ + C CE
Sbjct: 330 CGQEGRGEPRDDLDRCCLSHHCCLEQVRRLGC--LLERLPWSPVVCVDHTPKCGGQSLCE 387
Query: 76 KPDLTNSSQLTPSEAEDCSSSDSSCVRP 103
K L + T +E +S + S P
Sbjct: 388 K--LLCACDQTAAECMTSASFNQSLKSP 413
Score = 28.9 bits (63), Expect = 1.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 37 CCHGHDCCYTRAEEAGCSPKTERYSWQ--CVNQSVLC 71
CC H CY A E C + S + CV++ ++C
Sbjct: 116 CCFQHRRCYEEAAEMDCLQDPAKLSTEVNCVSKKIIC 152
>gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens]
Length = 414
Score = 30.8 bits (68), Expect = 0.37
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 55 PKTERYSWQCVNQS--VLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAG 112
PK R ++ + Q L V + DL S+ + + D SSS SS DS SE ++G
Sbjct: 306 PKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSS-SSDSDSECESG 364
Query: 113 TE 114
+E
Sbjct: 365 SE 366
>gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens]
Length = 403
Score = 30.8 bits (68), Expect = 0.37
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 55 PKTERYSWQCVNQS--VLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAG 112
PK R ++ + Q L V + DL S+ + + D SSS SS DS SE ++G
Sbjct: 306 PKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSS-SSDSDSECESG 364
Query: 113 TE 114
+E
Sbjct: 365 SE 366
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 30.4 bits (67), Expect = 0.49
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 35 RECCHGHDCCYTRAEEAGCSPKTERYSW--QCVNQSVLCVRCEKPDLTNSSQLTPSEAED 92
+ CC CC + +GC + S C +QS C C SS S +
Sbjct: 111 KPCCSQSSCCKPCSCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKP 170
Query: 93 CSSSDSSCV 101
C S S CV
Sbjct: 171 CCSQSSCCV 179
Score = 28.9 bits (63), Expect = 1.4
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 20 GPSLSTCYQRGQLYTRECCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCVRCEKPDL 79
G S +CY + CC C + + + C P C +QS C C
Sbjct: 84 GCSQCSCY-------KPCCCSSGCGSSCCQSSCCKP--------CCSQSSCCKPCSCSSG 128
Query: 80 TNSSQLTPSEAEDCSSSDSSCVRP 103
SS S + C S SSC +P
Sbjct: 129 CGSSCCQSSCCKPC-CSQSSCCKP 151
>gi|61744471 low density lipoprotein receptor-related protein 8
isoform 1 precursor [Homo sapiens]
Length = 963
Score = 30.0 bits (66), Expect = 0.63
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 38 CHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCV--RCEKPDLTNSSQLTPSEAEDCSS 95
C G C A+EAGC+ + +QC N+S L C+ D S+ C
Sbjct: 148 CDGEKDCEGGADEAGCATLCAPHEFQCGNRSCLAAVFVCDGDDDCGDG----SDERGC-- 201
Query: 96 SDSSCVRPDSQSEADAGTETISHR 119
+D +C + + D G I R
Sbjct: 202 ADPACGPREFRCGGDGGGACIPER 225
Score = 29.6 bits (65), Expect = 0.83
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 38 CHGHDCCYTRAEEAGCSPKTERYS-------------WQCVNQSVLCVRCEKPDLTNSSQ 84
C D C ++E C KT S W+C + ++ + T + Q
Sbjct: 66 CDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEECPDGSDESEATCTKQ 125
Query: 85 LTPSEAEDCSSSDSSCV----RPDSQSEADAGTE 114
+ P+E C + CV R D + + + G +
Sbjct: 126 VCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGAD 159
>gi|65301119 low density lipoprotein receptor-related protein 8
isoform 4 precursor [Homo sapiens]
Length = 904
Score = 30.0 bits (66), Expect = 0.63
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 38 CHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCV--RCEKPDLTNSSQLTPSEAEDCSS 95
C G C A+EAGC+ + +QC N+S L C+ D S+ C
Sbjct: 148 CDGEKDCEGGADEAGCATLCAPHEFQCGNRSCLAAVFVCDGDDDCGDG----SDERGC-- 201
Query: 96 SDSSCVRPDSQSEADAGTETISHR 119
+D +C + + D G I R
Sbjct: 202 ADPACGPREFRCGGDGGGACIPER 225
Score = 29.6 bits (65), Expect = 0.83
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 38 CHGHDCCYTRAEEAGCSPKTERYS-------------WQCVNQSVLCVRCEKPDLTNSSQ 84
C D C ++E C KT S W+C + ++ + T + Q
Sbjct: 66 CDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEECPDGSDESEATCTKQ 125
Query: 85 LTPSEAEDCSSSDSSCV----RPDSQSEADAGTE 114
+ P+E C + CV R D + + + G +
Sbjct: 126 VCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGAD 159
>gi|65301164 very low density lipoprotein receptor isoform b [Homo
sapiens]
Length = 845
Score = 30.0 bits (66), Expect = 0.63
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 17 LVLGPSLSTCYQRGQLYTRECCHGHDCCYTRAEEAGCSPKT-ERYSWQCVNQSVLCVRCE 75
+ P TC + C+G D C ++E C+P T + +QC S + +
Sbjct: 152 ITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWV 211
Query: 76 KPDLTNSSQLTPSEAEDC 93
D + S + E C
Sbjct: 212 CDDDADCSDQSDESLEQC 229
>gi|65301167 very low density lipoprotein receptor isoform a [Homo
sapiens]
Length = 873
Score = 30.0 bits (66), Expect = 0.63
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 17 LVLGPSLSTCYQRGQLYTRECCHGHDCCYTRAEEAGCSPKT-ERYSWQCVNQSVLCVRCE 75
+ P TC + C+G D C ++E C+P T + +QC S + +
Sbjct: 152 ITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWV 211
Query: 76 KPDLTNSSQLTPSEAEDC 93
D + S + E C
Sbjct: 212 CDDDADCSDQSDESLEQC 229
>gi|4557665 insulin-like growth factor 1 receptor precursor [Homo
sapiens]
Length = 1367
Score = 29.6 bits (65), Expect = 0.83
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 20/103 (19%)
Query: 24 STCYQRGQLYTRECCH-----------GHDCC-------YTRAEEAGCSPKTERY-SWQC 64
STC +R ECCH C Y C P T R+ W+C
Sbjct: 217 STCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRC 276
Query: 65 VNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQS 107
V++ C + ++S + E S +R SQS
Sbjct: 277 VDRD-FCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQS 318
>gi|61744467 low density lipoprotein receptor-related protein 8
isoform 3 precursor [Homo sapiens]
Length = 700
Score = 29.6 bits (65), Expect = 0.83
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 38 CHGHDCCYTRAEEAGCSPKTERYS-------------WQCVNQSVLCVRCEKPDLTNSSQ 84
C D C ++E C KT S W+C + ++ + T + Q
Sbjct: 66 CDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEECPDGSDESEATCTKQ 125
Query: 85 LTPSEAEDCSSSDSSCV----RPDSQSEADAGTE 114
+ P+E C + CV R D + + + G +
Sbjct: 126 VCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGAD 159
>gi|66082554 low density lipoprotein receptor-related protein 8
isoform 2 precursor [Homo sapiens]
Length = 793
Score = 29.6 bits (65), Expect = 0.83
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 38 CHGHDCCYTRAEEAGCSPKTERYS-------------WQCVNQSVLCVRCEKPDLTNSSQ 84
C D C ++E C KT S W+C + ++ + T + Q
Sbjct: 66 CDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEECPDGSDESEATCTKQ 125
Query: 85 LTPSEAEDCSSSDSSCV----RPDSQSEADAGTE 114
+ P+E C + CV R D + + + G +
Sbjct: 126 VCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGAD 159
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 29.6 bits (65), Expect = 0.83
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 57 TERYSWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETI 116
TE+ + + VN+ + + T S L PSE CS +S + P SQS + ++
Sbjct: 1036 TEKRTARPVNKVI-----KSASATALSLLIPSEHHTCSPL-ASPMSPHSQSSNPSSRDSS 1089
Query: 117 SHREILPEYGVINPAV 132
R+ LP G + P +
Sbjct: 1090 PSRDFLPALGSMRPPI 1105
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,594,674
Number of Sequences: 37866
Number of extensions: 295773
Number of successful extensions: 1064
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 112
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.