Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751012
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens] 395 e-110
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 61 5e-10
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 47 7e-06
gi|118498339 EMI domain containing 2 [Homo sapiens] 47 7e-06
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 47 1e-05
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 45 5e-05
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 45 5e-05
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 45 5e-05
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 45 5e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 6e-05
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 43 1e-04
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 43 1e-04
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 43 1e-04
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 43 1e-04
gi|150170670 piccolo isoform 2 [Homo sapiens] 43 1e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 43 1e-04
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 43 1e-04
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 43 2e-04
gi|24308227 zinc finger protein 687 [Homo sapiens] 42 2e-04
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 42 2e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 3e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 3e-04
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 42 3e-04
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 42 3e-04
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 42 3e-04
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 42 3e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 4e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 42 4e-04
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 42 4e-04
gi|178557734 microtubule-associated protein tau isoform 6 [Homo ... 41 7e-04
>gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens]
Length = 186
Score = 395 bits (1014), Expect = e-110
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MATCGELSVNCCAADFSEQRRRLERRRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASR 60
MATCGELSVNCCAADFSEQRRRLERRRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASR
Sbjct: 1 MATCGELSVNCCAADFSEQRRRLERRRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASR 60
Query: 61 QPPCGALTSLQAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQ 120
QPPCGALTSLQAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQ
Sbjct: 61 QPPCGALTSLQAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQ 120
Query: 121 PDEEPRATARGYEKEQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAPPVGS 180
PDEEPRATARGYEKEQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAPPVGS
Sbjct: 121 PDEEPRATARGYEKEQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAPPVGS 180
Query: 181 ACAGGA 186
ACAGGA
Sbjct: 181 ACAGGA 186
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 61.2 bits (147), Expect = 5e-10
Identities = 53/164 (32%), Positives = 73/164 (44%), Gaps = 29/164 (17%)
Query: 15 DFSEQ--RRRLERRRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQA 72
DF E+ +R + R +Q PGP PG G A+ +PP GAL + A
Sbjct: 18 DFLEEWKAKREKMRAKQNPPGPAPPG--------------GGSSDAAGKPPAGALGTPAA 63
Query: 73 APQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGY 132
A + +L G A P P GVNCAV +PGP++ ++EP A +
Sbjct: 64 A---AANELNNNLPGGAPAAPAVPGPGGVNCAV-GSAMLTRAAPGPRRSEDEPPAASASA 119
Query: 133 -------EKEQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQ 169
E+E DG PEK KSS GP ++ G + EKR+
Sbjct: 120 APPPQRDEEEPDGVPEKGKSS--GPSARKGKGQIEKRKLREKRR 161
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 47.4 bits (111), Expect = 7e-06
Identities = 48/160 (30%), Positives = 60/160 (37%), Gaps = 29/160 (18%)
Query: 32 PGPRG-PGMGQQPLQPGSPG----------------RGAGRQRASRQPPCGALTSLQAAP 74
PGP+G PG +P + G PG +GA +R S PP + P
Sbjct: 61 PGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLP 120
Query: 75 QQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEK 134
PPG A S + L PP P G+ PG PG PGP P P G
Sbjct: 121 G-PPGEAGVSGPPGGIGLRGPPGPSGL------PGL--PGPPGPPGPPGHPGVLPEGATD 171
Query: 135 EQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSG 174
Q P C GPP G + E+ +VG+ G
Sbjct: 172 LQ--CPSICPPGPPGPPGMPGFKGPTG-YKGEQGEVGKDG 208
Score = 32.0 bits (71), Expect = 0.32
Identities = 40/133 (30%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 53 AGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYAD 112
AG QR P G P PG + P L PP P+G +PG A
Sbjct: 23 AGAQRVGLPGPPGP-----PGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAG 77
Query: 113 -PGSPGPQQPDEEPRATARGYEKEQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQVG 171
PG PG T R GAP + LGPP LG + + + G
Sbjct: 78 LPGLPGVD------GLTGRDGPPGPKGAPG--ERGSLGPPGPPGLGGKG--LPGPPGEAG 127
Query: 172 RSGAPPVGSACAG 184
SG PP G G
Sbjct: 128 VSG-PPGGIGLRG 139
Score = 31.2 bits (69), Expect = 0.54
Identities = 30/94 (31%), Positives = 34/94 (36%), Gaps = 24/94 (25%)
Query: 26 RRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSL 85
R R E G GP +P PG G R A + GAL PQ PPG+
Sbjct: 351 RGRAGELGEAGPS--GEPGVPGDAGMPGERGEAGHRGSAGAL-----GPQGPPGA----- 398
Query: 86 QGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQ 119
P RG + DPG PGPQ
Sbjct: 399 ----------PGVRGFQGQ--KGSMGDPGLPGPQ 420
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 47.4 bits (111), Expect = 7e-06
Identities = 46/132 (34%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 32 PGPRG-PGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPL 90
PGPRG PG +P PG PG AG S P GAL SLQ + G + +
Sbjct: 238 PGPRGLPGEMGRPGPPGPPGP-AGNPGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDT 296
Query: 91 ALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAPEKCKSSELGP 150
L P PRG PG PG PGP+ P P G Q A E+ +GP
Sbjct: 297 VLAGVPGPRG------PPG--PPGPPGPRGPPGPP-----GTPGSQGLAGER---GTVGP 340
Query: 151 PCQERLGAEDGE 162
+ + E+GE
Sbjct: 341 SGEPGVKGEEGE 352
Score = 34.7 bits (78), Expect = 0.049
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 27/93 (29%)
Query: 28 RQVEP-GPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSL 85
RQ P GP GP G P G PG R + + P G PPG
Sbjct: 191 RQRRPTGPAGPPGQTGPPGPAGPPGSKGDRGQTGEKGPAG-----------PPG------ 233
Query: 86 QGSPLALHLPPPPRGVNCAVCRPGYADPGSPGP 118
L PP PRG+ + RPG PG PGP
Sbjct: 234 ------LLGPPGPRGLPGEMGRPG--PPGPPGP 258
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 46.6 bits (109), Expect = 1e-05
Identities = 44/123 (35%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 36 GPGMGQQPLQPGSPGRGAGR------QRAS--RQPPCGALTSLQAAPQQPPGSAHTSLQG 87
GP +G P PG P GA Q A+ R+PP A S +A +PPG+ T L+
Sbjct: 242 GPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSA--SSLSASLRPPGAPATFLRP 299
Query: 88 SPLALHLPPPPR-----GVNCAVCRPGYADPG--SPGPQQPDEEP-RATARGYEKEQDGA 139
SP+ P P + G CA C A PG SPG P+ P A ARG +
Sbjct: 300 SPIPCSSPGPWQSLCGLGPPCAGCPWPTAGPGRRSPGGTSPERSPGTARARGDPTSLQAS 359
Query: 140 PEK 142
EK
Sbjct: 360 SEK 362
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 44.7 bits (104), Expect = 5e-05
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 25 RRRRQVEPGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHT 83
R+ + GPRGP G+ P PG PG Q +R PP + P PPGS
Sbjct: 1205 RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVI 1264
Query: 84 SLQGSPLALHLPPP--PRGVNCAVCRPG-YADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
++G ++ P P P G + PG PG+PG P +P K + G P
Sbjct: 1265 GIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNP 1324
Query: 141 EKCKSSELGPP 151
S +GPP
Sbjct: 1325 GFLGS--IGPP 1333
Score = 31.2 bits (69), Expect = 0.54
Identities = 34/108 (31%), Positives = 36/108 (33%), Gaps = 26/108 (24%)
Query: 32 PGPRGP----GMGQQ-----------PLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQ 76
PGP GP G G Q P PG PG R S P P
Sbjct: 607 PGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPG----PPGPPG 662
Query: 77 PPGSAHTSLQGSP-----LALHLPPPPRGVNCAVCRPGYADPGSPGPQ 119
PPG H QG P L P G + PG PG PGP+
Sbjct: 663 PPG--HPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPK 708
Score = 30.8 bits (68), Expect = 0.70
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 32 PGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSP-- 89
PGP GP + P P P G +SR L+ AP P +G P
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVPGSPGSSR-------PGLRGAPGWPGLKGSKGERGRPGK 411
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQP 121
A+ P P CA PG PGSPGP P
Sbjct: 412 DAMGTPGSP---GCA-GSPGL--PGSPGPPGP 437
Score = 29.6 bits (65), Expect = 1.6
Identities = 36/108 (33%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 32 PGPRGP-------GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTS 84
PGP+G G P PGSPG P G PQ PG T
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPG---------PAGPAGPPGYGPQGEPGLQGT- 629
Query: 85 LQGSPLALHLPPP--PRG-VNCAVCRPGY----ADPGSPGPQQPDEEP 125
QG P A P PRG ++ + PG PG PGPQ P P
Sbjct: 630 -QGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIP 676
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 44.7 bits (104), Expect = 5e-05
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 25 RRRRQVEPGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHT 83
R+ + GPRGP G+ P PG PG Q +R PP + P PPGS
Sbjct: 1205 RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVI 1264
Query: 84 SLQGSPLALHLPPP--PRGVNCAVCRPG-YADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
++G ++ P P P G + PG PG+PG P +P K + G P
Sbjct: 1265 GIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNP 1324
Query: 141 EKCKSSELGPP 151
S +GPP
Sbjct: 1325 GFLGS--IGPP 1333
Score = 31.2 bits (69), Expect = 0.54
Identities = 34/108 (31%), Positives = 36/108 (33%), Gaps = 26/108 (24%)
Query: 32 PGPRGP----GMGQQ-----------PLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQ 76
PGP GP G G Q P PG PG R S P P
Sbjct: 607 PGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPG----PPGPPG 662
Query: 77 PPGSAHTSLQGSP-----LALHLPPPPRGVNCAVCRPGYADPGSPGPQ 119
PPG H QG P L P G + PG PG PGP+
Sbjct: 663 PPG--HPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPK 708
Score = 30.8 bits (68), Expect = 0.70
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 32 PGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSP-- 89
PGP GP + P P P G +SR L+ AP P +G P
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVPGSPGSSR-------PGLRGAPGWPGLKGSKGERGRPGK 411
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQP 121
A+ P P CA PG PGSPGP P
Sbjct: 412 DAMGTPGSP---GCA-GSPGL--PGSPGPPGP 437
Score = 29.6 bits (65), Expect = 1.6
Identities = 36/108 (33%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 32 PGPRGP-------GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTS 84
PGP+G G P PGSPG P G PQ PG T
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPG---------PAGPAGPPGYGPQGEPGLQGT- 629
Query: 85 LQGSPLALHLPPP--PRG-VNCAVCRPGY----ADPGSPGPQQPDEEP 125
QG P A P PRG ++ + PG PG PGPQ P P
Sbjct: 630 -QGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIP 676
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 44.7 bits (104), Expect = 5e-05
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 25 RRRRQVEPGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHT 83
R+ + GPRGP G+ P PG PG Q +R PP + P PPGS
Sbjct: 1205 RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVI 1264
Query: 84 SLQGSPLALHLPPP--PRGVNCAVCRPG-YADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
++G ++ P P P G + PG PG+PG P +P K + G P
Sbjct: 1265 GIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNP 1324
Query: 141 EKCKSSELGPP 151
S +GPP
Sbjct: 1325 GFLGS--IGPP 1333
Score = 31.2 bits (69), Expect = 0.54
Identities = 34/108 (31%), Positives = 36/108 (33%), Gaps = 26/108 (24%)
Query: 32 PGPRGP----GMGQQ-----------PLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQ 76
PGP GP G G Q P PG PG R S P P
Sbjct: 607 PGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPG----PPGPPG 662
Query: 77 PPGSAHTSLQGSP-----LALHLPPPPRGVNCAVCRPGYADPGSPGPQ 119
PPG H QG P L P G + PG PG PGP+
Sbjct: 663 PPG--HPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPK 708
Score = 30.8 bits (68), Expect = 0.70
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 32 PGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSP-- 89
PGP GP + P P P G +SR L+ AP P +G P
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVPGSPGSSR-------PGLRGAPGWPGLKGSKGERGRPGK 411
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQP 121
A+ P P CA PG PGSPGP P
Sbjct: 412 DAMGTPGSP---GCA-GSPGL--PGSPGPPGP 437
Score = 29.6 bits (65), Expect = 1.6
Identities = 36/108 (33%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 32 PGPRGP-------GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTS 84
PGP+G G P PGSPG P G PQ PG T
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPG---------PAGPAGPPGYGPQGEPGLQGT- 629
Query: 85 LQGSPLALHLPPP--PRG-VNCAVCRPGY----ADPGSPGPQQPDEEP 125
QG P A P PRG ++ + PG PG PGPQ P P
Sbjct: 630 -QGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIP 676
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 44.7 bits (104), Expect = 5e-05
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 25 RRRRQVEPGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHT 83
R+ + GPRGP G+ P PG PG Q +R PP + P PPGS
Sbjct: 1205 RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVI 1264
Query: 84 SLQGSPLALHLPPP--PRGVNCAVCRPG-YADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
++G ++ P P P G + PG PG+PG P +P K + G P
Sbjct: 1265 GIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNP 1324
Query: 141 EKCKSSELGPP 151
S +GPP
Sbjct: 1325 GFLGS--IGPP 1333
Score = 31.2 bits (69), Expect = 0.54
Identities = 34/108 (31%), Positives = 36/108 (33%), Gaps = 26/108 (24%)
Query: 32 PGPRGP----GMGQQ-----------PLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQ 76
PGP GP G G Q P PG PG R S P P
Sbjct: 607 PGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPG----PPGPPG 662
Query: 77 PPGSAHTSLQGSP-----LALHLPPPPRGVNCAVCRPGYADPGSPGPQ 119
PPG H QG P L P G + PG PG PGP+
Sbjct: 663 PPG--HPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPK 708
Score = 30.8 bits (68), Expect = 0.70
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 32 PGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSP-- 89
PGP GP + P P P G +SR L+ AP P +G P
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVPGSPGSSR-------PGLRGAPGWPGLKGSKGERGRPGK 411
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQP 121
A+ P P CA PG PGSPGP P
Sbjct: 412 DAMGTPGSP---GCA-GSPGL--PGSPGPPGP 437
Score = 29.6 bits (65), Expect = 1.6
Identities = 36/108 (33%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 32 PGPRGP-------GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTS 84
PGP+G G P PGSPG P G PQ PG T
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPG---------PAGPAGPPGYGPQGEPGLQGT- 629
Query: 85 LQGSPLALHLPPP--PRG-VNCAVCRPGY----ADPGSPGPQQPDEEP 125
QG P A P PRG ++ + PG PG PGPQ P P
Sbjct: 630 -QGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIP 676
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 44.3 bits (103), Expect = 6e-05
Identities = 43/120 (35%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 31 EPGPRGP-GMGQQPLQ------PGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHT 83
E GPRGP G P Q PG PGR + P G L P+ PPG T
Sbjct: 1339 ERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGD--PGPRGPPGLPGT 1396
Query: 84 SLQGSP--LALHLPPPPRGVNCAVCRPGYAD-PGSPGPQQPDEEPRATARGYEKEQDGAP 140
+++G PP P A PG PGSPGPQ P P + E DGAP
Sbjct: 1397 AMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSE-DGAP 1455
Score = 40.8 bits (94), Expect = 7e-04
Identities = 61/192 (31%), Positives = 76/192 (39%), Gaps = 41/192 (21%)
Query: 28 RQVEPGPRGPGMGQQPL-------QPGSPG---RGAGRQRASRQPPCGALTSLQAAPQQP 77
R+ +PGP GP + PL PG PG +G R R PP + AP +P
Sbjct: 1366 RKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGI--APGEP 1423
Query: 78 --PGSAHTSLQGSPLALHLPPPPRGV--NCAVCRPGY-ADPGSPGPQQPDEEPRATA--- 129
PG + P+ PP +G + PG PGSPG Q P P A
Sbjct: 1424 GLPGLPGSPGPQGPVG---PPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKG 1480
Query: 130 -RGY--------EKEQDGAPEKCKSSELGPPCQERLGAEDGE-------MEMEKRQVGRS 173
RG+ EK + G P S L P R GA+ E + EK + GR
Sbjct: 1481 DRGFPGPLGEAGEKGERGPPGPAGSRGL-PGVAGRPGAKGPEGPPGPTGRQGEKGEPGRP 1539
Query: 174 GAPP-VGSACAG 184
G P VG A AG
Sbjct: 1540 GDPAVVGPAVAG 1551
Score = 38.5 bits (88), Expect = 0.003
Identities = 45/158 (28%), Positives = 58/158 (36%), Gaps = 19/158 (12%)
Query: 33 GPRGP-GMGQQPLQPGSPGRG----AGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQG 87
GP+GP G+ +P + G PGRG G P L Q +P P T G
Sbjct: 2198 GPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPG 2257
Query: 88 SPLALHLPPPPRGVNCAVCRPGY-ADPGSPGPQQPDEEPRATARGYE--------KEQDG 138
+P G + PG PG PGP P EP T + K + G
Sbjct: 2258 APGR----DGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKG 2313
Query: 139 APEKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAP 176
AP +G P + G EK + GR+G P
Sbjct: 2314 APGGLAGDLVGEPGAKGDRGLPGP-RGEKGEAGRAGEP 2350
Score = 37.4 bits (85), Expect = 0.008
Identities = 46/162 (28%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 7 LSVNCCAADFSEQRRRLE-----RRRRQVEPGPRG-PGMGQQPLQPGSPGRGAGRQRASR 60
L+ C A F+ Q R + ++ EPG G G P PG PGR
Sbjct: 1229 LATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGA---PGP 1285
Query: 61 QPPCGALTS--------LQAAPQQPPGSAHTSLQGSPLALHLP--PPPRGVNCAVCRPGY 110
Q P G+ T+ P P + + G+P P P PRG
Sbjct: 1286 QGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRG---------- 1335
Query: 111 ADPGSPGPQQPDEEPRATARGYEKEQDGAP-EKCKSSELGPP 151
DPG GP+ P EP A + E G P K GPP
Sbjct: 1336 -DPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPP 1376
Score = 37.4 bits (85), Expect = 0.008
Identities = 48/154 (31%), Positives = 56/154 (36%), Gaps = 22/154 (14%)
Query: 32 PGPRG-PGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQ----PPGSAHTSLQ 86
PGP G G +P PG PGR G A R G +Q PPG L
Sbjct: 2027 PGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPG-----LP 2081
Query: 87 GSPLALHLPPPPRGVNCAVCRPG---YADPGSPGPQQPDEEPRATARGYEKEQDGAPE-K 142
G+P PP P G +V PG + G PG + EP + K G P K
Sbjct: 2082 GTPG----PPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIK 2137
Query: 143 CKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAP 176
E GP Q+ GE M G G P
Sbjct: 2138 GDRGEPGPRGQDGNPGLPGERGM----AGPEGKP 2167
Score = 29.6 bits (65), Expect = 1.6
Identities = 45/162 (27%), Positives = 52/162 (32%), Gaps = 30/162 (18%)
Query: 32 PGPRG----PGMGQQPLQ------PGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSA 81
PGP G PG+ +P PG GR + R + A P+ G
Sbjct: 1500 PGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDV 1559
Query: 82 HTSLQGSPLALHLPPPPRGVNCAVCR---PGYADPGSPGPQ--QPDEEP-RATARGYEKE 135
P PRG PG PG PGP+ D P T R
Sbjct: 1560 G------------PAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPG 1607
Query: 136 QDGAP-EKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAP 176
G P EK GPP DGE+ EK G G P
Sbjct: 1608 DSGPPGEKGDPGRPGPPGPVGPRGRDGEVG-EKGDEGPPGDP 1648
Score = 29.3 bits (64), Expect = 2.0
Identities = 39/163 (23%), Positives = 52/163 (31%), Gaps = 30/163 (18%)
Query: 31 EPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPL 90
EPGP GP PG+ +G R P P+ PG +
Sbjct: 1698 EPGPPGPPGRLVDTGPGAREKGEPGDRGQEGP---------RGPKGDPGLPGAPGERGIE 1748
Query: 91 ALHLPPPPR---GVNCAVCRPGYADP----------GSPGPQQPDEEPRATARGYEKEQD 137
PP P+ GV G P G PG P A + + +D
Sbjct: 1749 GFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRD 1808
Query: 138 GAP----EKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAP 176
G P E+ GPP EDG+ + G++G P
Sbjct: 1809 GLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLN----GKNGEP 1847
Score = 29.3 bits (64), Expect = 2.0
Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 98 PRGVNCAVCRPGYADPGSPGPQ-------QPDEEPRATARGYEKEQ--------DGAPEK 142
P+G A PG DPGSPG + + RG + E+ DG EK
Sbjct: 2585 PQGQPGAAGIPG--DPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDG--EK 2640
Query: 143 CKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAP 176
E GPP + L GEM E G+SGAP
Sbjct: 2641 GDKGEAGPPGRPGLAGHKGEMG-EPGVPGQSGAP 2673
Score = 28.5 bits (62), Expect = 3.5
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 15/111 (13%)
Query: 31 EPGPRG-PGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSP 89
+PG G PG+ + +PG PG R + GA S + P G +G+P
Sbjct: 1831 KPGEDGKPGLNGKNGEPGDPGEDG---RKGEKGDSGA--SGREGRDGPKGE-----RGAP 1880
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
L P P G+ V PG PG PG P + T K + G P
Sbjct: 1881 GILG-PQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETG---SKGEQGLP 1927
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 43.1 bits (100), Expect = 1e-04
Identities = 50/178 (28%), Positives = 66/178 (37%), Gaps = 19/178 (10%)
Query: 19 QRRRLERRRRQVEPGPRGPGMGQQPLQPGSPGR-GAGRQRASRQPPCGALTSLQAAPQQP 77
+RR R +P P GP P +P PG G PP GA T+ Q+P
Sbjct: 55 KRRPGHTAPRTQQPKPSGPS--SHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP 112
Query: 78 --PGSAHTSLQGSPLAL--------HLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRA 127
PGS H P A PP P C GS G ++ P A
Sbjct: 113 PSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH--LRSSGSTGTRRAPSHPAA 170
Query: 128 TARGYEKE--QDGAPEKCKSSELGPPCQE--RLGAEDGEMEMEKRQVGRSGAPPVGSA 181
Y +E ++ P G C E R GAE G ++E + R+G+ V S+
Sbjct: 171 LQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSS 228
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 43.1 bits (100), Expect = 1e-04
Identities = 50/178 (28%), Positives = 66/178 (37%), Gaps = 19/178 (10%)
Query: 19 QRRRLERRRRQVEPGPRGPGMGQQPLQPGSPGR-GAGRQRASRQPPCGALTSLQAAPQQP 77
+RR R +P P GP P +P PG G PP GA T+ Q+P
Sbjct: 55 KRRPGHTAPRTQQPKPSGPS--SHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP 112
Query: 78 --PGSAHTSLQGSPLAL--------HLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRA 127
PGS H P A PP P C GS G ++ P A
Sbjct: 113 PSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH--LRSSGSTGTRRAPSHPAA 170
Query: 128 TARGYEKE--QDGAPEKCKSSELGPPCQE--RLGAEDGEMEMEKRQVGRSGAPPVGSA 181
Y +E ++ P G C E R GAE G ++E + R+G+ V S+
Sbjct: 171 LQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSS 228
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 43.1 bits (100), Expect = 1e-04
Identities = 50/178 (28%), Positives = 66/178 (37%), Gaps = 19/178 (10%)
Query: 19 QRRRLERRRRQVEPGPRGPGMGQQPLQPGSPGR-GAGRQRASRQPPCGALTSLQAAPQQP 77
+RR R +P P GP P +P PG G PP GA T+ Q+P
Sbjct: 55 KRRPGHTAPRTQQPKPSGPS--SHPREPPLPGAVTGGSLHFQEPPPLGAATAGSRHRQKP 112
Query: 78 --PGSAHTSLQGSPLAL--------HLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRA 127
PGS H P A PP P C GS G ++ P A
Sbjct: 113 PSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH--LRSSGSTGTRRAPSHPAA 170
Query: 128 TARGYEKE--QDGAPEKCKSSELGPPCQE--RLGAEDGEMEMEKRQVGRSGAPPVGSA 181
Y +E ++ P G C E R GAE G ++E + R+G+ V S+
Sbjct: 171 LQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGWGKLEPQGTRRTGSLGVDSS 228
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 43.1 bits (100), Expect = 1e-04
Identities = 53/183 (28%), Positives = 65/183 (35%), Gaps = 32/183 (17%)
Query: 20 RRRLERRRRQVEPGPRGPG--MGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQP 77
RRR + R Q P + PG + +PL P SPG R S P GA TS QA P
Sbjct: 146 RRRKQPCRNQAAPAQKPPGRRLFPEPLPPSSPG-----FRPSSYPCSGASTSSQATQPGP 200
Query: 78 PGSAHTS-----------LQGSPLALHLPPPPRGVNCAVCRPGYADPG-----SPGPQQP 121
+H S L S L P + +PG A P P P
Sbjct: 201 ALLSHASEARPATRSRITLVASALRRRASGPGPVIRGCTAQPGPAFPHRATHLDPARLSP 260
Query: 122 DEEPRATARGYEKEQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAPPVGSA 181
+ P RG A C S+ P R G + + + GR AP GSA
Sbjct: 261 ESAPGPARRGRASVPGPARRGCDSA----PGPARRGRDSAPVSAPR---GRDSAP--GSA 311
Query: 182 CAG 184
G
Sbjct: 312 RRG 314
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 43.1 bits (100), Expect = 1e-04
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 32 PGP-----RGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQP-PGSAHTSL 85
PGP + PG G+ P Q PG+ + +Q +PP + PQQP P
Sbjct: 434 PGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQ 493
Query: 86 QGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQP-DEEPRATARGYEKEQDGAPEKCK 144
GS PP + P P P PQQP +P + G K P K
Sbjct: 494 PGS-----AKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK 548
Query: 145 SS 146
S
Sbjct: 549 PS 550
Score = 38.9 bits (89), Expect = 0.003
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 30 VEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQ---QPPGSAHTSLQ 86
V+P + PG + P QP P + +Q S +P +S Q P+ QPPG T Q
Sbjct: 349 VKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP-----SSEQPGPKALAQPPGVGKTPAQ 403
Query: 87 GSPLALHLPPPPRGVNC---AVCRPGYADPG-SPGP-QQPDEEPRATARGYEKEQDGAPE 141
A PP + V +PG P +PGP + P ++P G Q P
Sbjct: 404 QPGPA---KPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQP---GPGKIPAQQAGPG 457
Query: 142 KCKSSELGP 150
K + + GP
Sbjct: 458 KTSAQQTGP 466
Score = 35.4 bits (80), Expect = 0.029
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 31 EPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPL 90
+P + PG + P+QP PG + +PP L + QQ +S Q P
Sbjct: 340 KPLAQQPGTVKPPVQP--PG--------TTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPK 389
Query: 91 ALHLPPPPRGV-NCAVCRPGYADP-----GSPGP--QQPDEEPRATARGYEKE--QDGAP 140
AL PP GV +PG A P G+P P QQP + A A G K Q P
Sbjct: 390 ALAQPP---GVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGP 446
Query: 141 EKCKSSELGP 150
K + + GP
Sbjct: 447 GKIPAQQAGP 456
Score = 35.0 bits (79), Expect = 0.037
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 31 EPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQ-GSP 89
+P P+ PG + P Q + +Q S +PP + +PQQP + S Q GS
Sbjct: 478 KPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSA 537
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAPEK----CKS 145
P P + + GS P QP P + + G P+ C +
Sbjct: 538 KPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQP---PTVSPSAKQPPSQGLPKTICPLCNT 594
Query: 146 SEL 148
+EL
Sbjct: 595 TEL 597
Score = 28.9 bits (63), Expect = 2.7
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 30/107 (28%)
Query: 31 EPGPRGPGMGQ-QPLQPGS---PGRGAGRQRASRQPPCGALTSLQAA-----------PQ 75
+P P+ PG + P QPGS P + G + S Q P A S Q + P
Sbjct: 508 KPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPL 567
Query: 76 QPP----GSAHTSLQGSP-----------LALHLPPPPRGVNCAVCR 107
QPP + QG P L LH+P C C+
Sbjct: 568 QPPTVSPSAKQPPSQGLPKTICPLCNTTELLLHVPEKANFNTCTECQ 614
Score = 27.3 bits (59), Expect = 7.8
Identities = 40/158 (25%), Positives = 56/158 (35%), Gaps = 17/158 (10%)
Query: 32 PGPRGPGMGQQ-PLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPL 90
PGPR P GQ P SP +R S L S+ AP+ P + ++ G
Sbjct: 879 PGPR-PTAGQTVPTPQQSPKPQEQSRRFSLN-----LGSITDAPKSQPTTPQETVTGKLF 932
Query: 91 ALHLPPPPRGVNC--AVCRPG---YADPGSPGPQQPDEEPRATARGYEKEQDGAPEKCKS 145
+ N +PG + PG+P Q P T++G K AP
Sbjct: 933 GFGASIFSQASNLISTAGQPGPHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAK 992
Query: 146 S-----ELGPPCQERLGAEDGEMEMEKRQVGRSGAPPV 178
S E P E+L + + KR PP+
Sbjct: 993 SIPVKKETKAPAAEKLEPKAEQAPTVKRTETEKKPPPI 1030
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 43.1 bits (100), Expect = 1e-04
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 32 PGP-----RGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQP-PGSAHTSL 85
PGP + PG G+ P Q PG+ + +Q +PP + PQQP P
Sbjct: 434 PGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQ 493
Query: 86 QGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQP-DEEPRATARGYEKEQDGAPEKCK 144
GS PP + P P P PQQP +P + G K P K
Sbjct: 494 PGS-----AKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK 548
Query: 145 SS 146
S
Sbjct: 549 PS 550
Score = 38.9 bits (89), Expect = 0.003
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 30 VEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQ---QPPGSAHTSLQ 86
V+P + PG + P QP P + +Q S +P +S Q P+ QPPG T Q
Sbjct: 349 VKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP-----SSEQPGPKALAQPPGVGKTPAQ 403
Query: 87 GSPLALHLPPPPRGVNC---AVCRPGYADPG-SPGP-QQPDEEPRATARGYEKEQDGAPE 141
A PP + V +PG P +PGP + P ++P G Q P
Sbjct: 404 QPGPA---KPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQP---GPGKIPAQQAGPG 457
Query: 142 KCKSSELGP 150
K + + GP
Sbjct: 458 KTSAQQTGP 466
Score = 35.4 bits (80), Expect = 0.029
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 31 EPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPL 90
+P + PG + P+QP PG + +PP L + QQ +S Q P
Sbjct: 340 KPLAQQPGTVKPPVQP--PG--------TTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPK 389
Query: 91 ALHLPPPPRGV-NCAVCRPGYADP-----GSPGP--QQPDEEPRATARGYEKE--QDGAP 140
AL PP GV +PG A P G+P P QQP + A A G K Q P
Sbjct: 390 ALAQPP---GVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGP 446
Query: 141 EKCKSSELGP 150
K + + GP
Sbjct: 447 GKIPAQQAGP 456
Score = 35.0 bits (79), Expect = 0.037
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 31 EPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQ-GSP 89
+P P+ PG + P Q + +Q S +PP + +PQQP + S Q GS
Sbjct: 478 KPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSA 537
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAPEK----CKS 145
P P + + GS P QP P + + G P+ C +
Sbjct: 538 KPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQP---PTVSPSAKQPPSQGLPKTICPLCNT 594
Query: 146 SEL 148
+EL
Sbjct: 595 TEL 597
Score = 28.9 bits (63), Expect = 2.7
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 30/107 (28%)
Query: 31 EPGPRGPGMGQ-QPLQPGS---PGRGAGRQRASRQPPCGALTSLQAA-----------PQ 75
+P P+ PG + P QPGS P + G + S Q P A S Q + P
Sbjct: 508 KPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPL 567
Query: 76 QPP----GSAHTSLQGSP-----------LALHLPPPPRGVNCAVCR 107
QPP + QG P L LH+P C C+
Sbjct: 568 QPPTVSPSAKQPPSQGLPKTICPLCNTTELLLHVPEKANFNTCTECQ 614
Score = 27.3 bits (59), Expect = 7.8
Identities = 40/158 (25%), Positives = 56/158 (35%), Gaps = 17/158 (10%)
Query: 32 PGPRGPGMGQQ-PLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPL 90
PGPR P GQ P SP +R S L S+ AP+ P + ++ G
Sbjct: 879 PGPR-PTAGQTVPTPQQSPKPQEQSRRFSLN-----LGSITDAPKSQPTTPQETVTGKLF 932
Query: 91 ALHLPPPPRGVNC--AVCRPG---YADPGSPGPQQPDEEPRATARGYEKEQDGAPEKCKS 145
+ N +PG + PG+P Q P T++G K AP
Sbjct: 933 GFGASIFSQASNLISTAGQPGPHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAK 992
Query: 146 S-----ELGPPCQERLGAEDGEMEMEKRQVGRSGAPPV 178
S E P E+L + + KR PP+
Sbjct: 993 SIPVKKETKAPAAEKLEPKAEQAPTVKRTETEKKPPPI 1030
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 43.1 bits (100), Expect = 1e-04
Identities = 53/182 (29%), Positives = 68/182 (37%), Gaps = 24/182 (13%)
Query: 5 GELSVNCCAADFSEQRRRLERRRRQVEPGPRGPGMG--------QQPLQPGSPGRGAGRQ 56
GE + D S RL R R + E G RG G Q L G G
Sbjct: 3048 GESEGSSSDEDGSRPLTRLARLRLEAE-GMRGRKSGGSMVVAVIQDDLDLADSGPGG--- 3103
Query: 57 RASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSP 116
PP +LT + + PGS L+ L P G + + + G P SP
Sbjct: 3104 -LELTPPVVSLTPKLRSTRLRPGSLVPPLETEKLPRKRAGAPVGGSPGLAKRGRLQPPSP 3162
Query: 117 -GPQQPDEEPRATARGYEKEQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGA 175
GP+ EE A A G E+E DG P + P RL G +++ RS A
Sbjct: 3163 LGPEGSVEESEAEASGEEEEGDGTPRR-------RPGPRRL---VGTTNQGDQRILRSSA 3212
Query: 176 PP 177
PP
Sbjct: 3213 PP 3214
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 42.7 bits (99), Expect = 2e-04
Identities = 40/120 (33%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 25 RRRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPC------GALTSLQAAPQQPP 78
R + Q PG +P QP G G GR +A +PP A TS P
Sbjct: 1191 RLQLQTPPGS-ATAADLRPKQPPGRGLGPGRAQAGARPPAPRSPRLPASTSAARNASASP 1249
Query: 79 GSAHTSLQGSPLALHLP----PPPRGVNCAVCRP-GYADPG--SPGPQQPDEEPRATARG 131
S S + SP H PPPRGV A +P G PG GP+ + RAT +G
Sbjct: 1250 RSQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDGTPSPGGSKKGPRGKLQAQRATTKG 1309
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 42.4 bits (98), Expect = 2e-04
Identities = 43/154 (27%), Positives = 50/154 (32%), Gaps = 17/154 (11%)
Query: 32 PGPRGPGMGQQPLQPGS----PGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQG 87
P P G P P S G G Q PP GAL +P P A
Sbjct: 182 PSPTREGALTPPPFPSSFELAQENGPGMQPPVSSPPLGALKQESCSPHHPQVLAQQGSGS 241
Query: 88 SPLALHL-----PPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAPEK 142
SP A + PPP GV P + SPG Q P P+ KE+D
Sbjct: 242 SPKATDIPASASPPPVAGV------PFFKQ--SPGHQSPLASPKVPVCQPLKEEDDDEGP 293
Query: 143 CKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAP 176
S G P GAE + + S P
Sbjct: 294 VDKSSPGSPQSPSSGAEAADEDSNDSPASSSSRP 327
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 42.4 bits (98), Expect = 2e-04
Identities = 50/173 (28%), Positives = 58/173 (33%), Gaps = 27/173 (15%)
Query: 29 QVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSL----------QAAPQQPP 78
Q PGP GP Q P PG G + Q P G + PQ PP
Sbjct: 678 QRHPGPHGPLGPQGP--PGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPP 735
Query: 79 GSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRAT--ARGYEKEQ 136
G+ P + PP P G+ G P S GP PR G + Q
Sbjct: 736 GTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLM-GLNPRGMQGPPGPRENQ 794
Query: 137 DGAPEKCKSSELGPPCQERLGAE-------DGEMEMEKRQV--GRSGAPPVGS 180
AP+ +G P QE G G EM Q G G PP GS
Sbjct: 795 GPAPQ---GMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGS 844
Score = 34.7 bits (78), Expect = 0.049
Identities = 41/148 (27%), Positives = 52/148 (35%), Gaps = 33/148 (22%)
Query: 27 RRQVEPGPRGPGMGQQPLQPGSP-------GRGAGRQRASRQ-------PPCGALTSLQA 72
R P P+G MG P + P G G R ++ PP G++
Sbjct: 791 RENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQ 850
Query: 73 APQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGY 132
+ PPGS S QG P L PPP+G PG G Q P P +
Sbjct: 851 ELRGPPGSQ--SQQGPPQG-SLGPPPQG-------GMQGPPGPQGQQNPARGPHPSQGPI 900
Query: 133 EKEQ-------DG--APEKCKSSELGPP 151
+Q DG AP + GPP
Sbjct: 901 PFQQQKTPLLGDGPRAPFNQEGQSTGPP 928
Score = 32.3 bits (72), Expect = 0.24
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 32 PGPRGPGMGQQPLQ----PGSPGRGAGRQRA-SRQPPCGALTSLQAAPQQPPGSAHTSLQ 86
P P PG+GQQ Q P +PG+G G + SR PP + + + G +
Sbjct: 927 PPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPE 986
Query: 87 GSPLA----LHLPPPPRGVNCAVCRPGYADPGS-PGPQQPDEEPRATARGYEKEQDGAP- 140
P PP RG + P + D S P PD+ R +E P
Sbjct: 987 RGPFRGGQDCRGPPDRRGPH-----PDFPDDFSRPDDFHPDKRFGHRLREFEGRGGPLPQ 1041
Query: 141 -EKCKSSELGPP 151
EK + GPP
Sbjct: 1042 EEKWRRGGPGPP 1053
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.0 bits (97), Expect = 3e-04
Identities = 46/147 (31%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 25 RRRRQVEPGPRGPGMGQQ----PLQPGSPGRGAGRQRASRQPPCGA-----LTSLQAAPQ 75
++R + GP PG G Q PLQ P +G + + PP G+ L S +APQ
Sbjct: 458 QQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQ-QHLSGLGPPAGSPLPQRLPSPTSAPQ 516
Query: 76 QPPGSAHTSLQGS-----PLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATAR 130
QP A QG P+A PP RP P SP PQ+ P+AT
Sbjct: 517 QPASQAAPPTQGQGRQSRPVAGGPGAPP------AARP----PASPSPQRQAGPPQAT-- 564
Query: 131 GYEKEQDGAPEKCKSSELGPPCQERLG 157
+ P K+S P Q+R G
Sbjct: 565 --RQTSVSGPAPPKASGAPPGGQQRQG 589
Score = 42.0 bits (97), Expect = 3e-04
Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 29/141 (20%)
Query: 25 RRRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQ--------------PPCGALTSL 70
R+ R V GP P + P P SP R AG +A+RQ PP G
Sbjct: 531 RQSRPVAGGPGAPPAARPPASP-SPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQ--QR 587
Query: 71 QAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATAR 130
Q PQ+PPG A + Q S P PR +P + PG G +P
Sbjct: 588 QGPPQKPPGPAGPTRQASQAG----PVPRTGPPTTQQPRPSGPGPAGRPKPQLA------ 637
Query: 131 GYEKEQDGAPEKCKSSELGPP 151
+K P ++ GPP
Sbjct: 638 --QKPSQDVPPPATAAAGGPP 656
Score = 36.6 bits (83), Expect = 0.013
Identities = 47/154 (30%), Positives = 60/154 (38%), Gaps = 31/154 (20%)
Query: 26 RRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQP-PGSAHTS 84
R+RQ + P GQ P PG+ G + PP Q P QP PG
Sbjct: 420 RQRQRDASPGRGSHGQTP-SPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQR-- 476
Query: 85 LQGSPLALHLPPPPRGVNCAVCRPGYADP-GSPGPQQPDEEPRATARGYEKEQDGAPEKC 143
QG PL PPP+G G P GSP PQ+ P T+ AP++
Sbjct: 477 -QGPPLQQR--PPPQGQQHL---SGLGPPAGSPLPQR---LPSPTS---------APQQ- 517
Query: 144 KSSELGPPCQERLGAEDGEMEMEKRQVGRSGAPP 177
+S+ PP Q G+ + G GAPP
Sbjct: 518 PASQAAPPTQ-------GQGRQSRPVAGGPGAPP 544
Score = 28.9 bits (63), Expect = 2.7
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 25 RRRRQVEPGPR-GPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHT 83
R+ Q P PR GP QQP G G + + +++P AA PP
Sbjct: 602 RQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLN 661
Query: 84 SLQGSPLALHLPPP 97
Q A +LP P
Sbjct: 662 KSQSLTNAFNLPEP 675
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 42.0 bits (97), Expect = 3e-04
Identities = 46/147 (31%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 25 RRRRQVEPGPRGPGMGQQ----PLQPGSPGRGAGRQRASRQPPCGA-----LTSLQAAPQ 75
++R + GP PG G Q PLQ P +G + + PP G+ L S +APQ
Sbjct: 458 QQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQ-QHLSGLGPPAGSPLPQRLPSPTSAPQ 516
Query: 76 QPPGSAHTSLQGS-----PLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATAR 130
QP A QG P+A PP RP P SP PQ+ P+AT
Sbjct: 517 QPASQAAPPTQGQGRQSRPVAGGPGAPP------AARP----PASPSPQRQAGPPQAT-- 564
Query: 131 GYEKEQDGAPEKCKSSELGPPCQERLG 157
+ P K+S P Q+R G
Sbjct: 565 --RQTSVSGPAPPKASGAPPGGQQRQG 589
Score = 42.0 bits (97), Expect = 3e-04
Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 29/141 (20%)
Query: 25 RRRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQ--------------PPCGALTSL 70
R+ R V GP P + P P SP R AG +A+RQ PP G
Sbjct: 531 RQSRPVAGGPGAPPAARPPASP-SPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQ--QR 587
Query: 71 QAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATAR 130
Q PQ+PPG A + Q S P PR +P + PG G +P
Sbjct: 588 QGPPQKPPGPAGPTRQASQAG----PVPRTGPPTTQQPRPSGPGPAGRPKPQLA------ 637
Query: 131 GYEKEQDGAPEKCKSSELGPP 151
+K P ++ GPP
Sbjct: 638 --QKPSQDVPPPATAAAGGPP 656
Score = 36.6 bits (83), Expect = 0.013
Identities = 47/154 (30%), Positives = 60/154 (38%), Gaps = 31/154 (20%)
Query: 26 RRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQP-PGSAHTS 84
R+RQ + P GQ P PG+ G + PP Q P QP PG
Sbjct: 420 RQRQRDASPGRGSHGQTP-SPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQR-- 476
Query: 85 LQGSPLALHLPPPPRGVNCAVCRPGYADP-GSPGPQQPDEEPRATARGYEKEQDGAPEKC 143
QG PL PPP+G G P GSP PQ+ P T+ AP++
Sbjct: 477 -QGPPLQQR--PPPQGQQHL---SGLGPPAGSPLPQR---LPSPTS---------APQQ- 517
Query: 144 KSSELGPPCQERLGAEDGEMEMEKRQVGRSGAPP 177
+S+ PP Q G+ + G GAPP
Sbjct: 518 PASQAAPPTQ-------GQGRQSRPVAGGPGAPP 544
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 42.0 bits (97), Expect = 3e-04
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 32 PGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPP------GSAHTS 84
PGP+G G+ P QPG G+ + + P L+S+ AA + + S
Sbjct: 157 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQAS 216
Query: 85 LQGSPLALHLPPPPRGVNCAVCRPGY----ADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
+QG P PP P G + + PG PG PGP P +P K + G P
Sbjct: 217 IQGPPG----PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMP 272
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 42.0 bits (97), Expect = 3e-04
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 32 PGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPP------GSAHTS 84
PGP+G G+ P QPG G+ + + P L+S+ AA + + S
Sbjct: 148 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQAS 207
Query: 85 LQGSPLALHLPPPPRGVNCAVCRPGY----ADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
+QG P PP P G + + PG PG PGP P +P K + G P
Sbjct: 208 IQGPPG----PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMP 263
Score = 27.7 bits (60), Expect = 5.9
Identities = 27/96 (28%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 31 EPGPRG-PGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSP 89
E GPRG PG P G PG+ P +P + T GSP
Sbjct: 438 EKGPRGKPGDMGPPGPQGPPGKDG-------PPGVKGENGHPGSPGEKGEKGETGQAGSP 490
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEP 125
+G PG PG PGP+ P P
Sbjct: 491 -------GEKGEAGEKGNPGAEVPGLPGPEGPPGPP 519
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 42.0 bits (97), Expect = 3e-04
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 32 PGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPP------GSAHTS 84
PGP+G G+ P QPG G+ + + P L+S+ AA + + S
Sbjct: 186 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQAS 245
Query: 85 LQGSPLALHLPPPPRGVNCAVCRPGY----ADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
+QG P PP P G + + PG PG PGP P +P K + G P
Sbjct: 246 IQGPPG----PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMP 301
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 42.0 bits (97), Expect = 3e-04
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 32 PGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPP------GSAHTS 84
PGP+G G+ P QPG G+ + + P L+S+ AA + + S
Sbjct: 186 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQAS 245
Query: 85 LQGSPLALHLPPPPRGVNCAVCRPGY----ADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
+QG P PP P G + + PG PG PGP P +P K + G P
Sbjct: 246 IQGPPG----PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMP 301
Score = 27.7 bits (60), Expect = 5.9
Identities = 27/96 (28%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 31 EPGPRG-PGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSP 89
E GPRG PG P G PG+ P +P + T GSP
Sbjct: 476 EKGPRGKPGDMGPPGPQGPPGKDG-------PPGVKGENGHPGSPGEKGEKGETGQAGSP 528
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEP 125
+G PG PG PGP+ P P
Sbjct: 529 -------GEKGEAGEKGNPGAEVPGLPGPEGPPGPP 557
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 41.6 bits (96), Expect = 4e-04
Identities = 38/114 (33%), Positives = 44/114 (38%), Gaps = 25/114 (21%)
Query: 32 PGPRGP-------------------GMGQQPLQPGSPGRGAGRQRASRQP-PCGALTSLQ 71
PGP+GP G P PGSPG AG+Q A P P G +
Sbjct: 1085 PGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGP-AGQQGAIGSPGPAGPRGPV- 1142
Query: 72 AAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEP 125
P PPG TS P+ P RG + PG+ PG PGP P P
Sbjct: 1143 -GPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH--PGQPGPPGPPGAP 1193
Score = 37.4 bits (85), Expect = 0.008
Identities = 38/112 (33%), Positives = 40/112 (35%), Gaps = 32/112 (28%)
Query: 31 EPGPRG-------PGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQ------- 76
+PGP G PG+ QP PGSPG P G S PQ
Sbjct: 110 DPGPPGIPGRNGDPGIPGQPGSPGSPG------------PPGICESCPTGPQNYSPQYDS 157
Query: 77 ---PPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEP 125
G A L G P PP P G PG PGSPG Q P EP
Sbjct: 158 YDVKSGVAVGGLAGYPGPAG-PPGPPGPPGTSGHPG--SPGSPGYQGPPGEP 206
Score = 34.3 bits (77), Expect = 0.064
Identities = 33/108 (30%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 32 PGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGS----AHTSLQG 87
PG GP G P P P G + + P + P PPGS G
Sbjct: 839 PGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLP-GPPGSNGNPGPPGPSG 897
Query: 88 SPLALHLPPPPRGVNCAVCRPGYADP----------GSPGPQQPDEEP 125
SP PP P G A PG + P GSPG Q P P
Sbjct: 898 SP-GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAP 944
Score = 33.9 bits (76), Expect = 0.083
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 20/120 (16%)
Query: 32 PGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPLA 91
PG +GP + P P RGA + P G ++ P P G G
Sbjct: 500 PGEKGPAGERGAPGPAGP-RGAAGEPGRDGVPGGP--GMRGMPGSPGGPGSDGKPG---- 552
Query: 92 LHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAPEKCKSSELGPP 151
PP +G + PG PGP P +P K DGAP K+ E G P
Sbjct: 553 ---PPGSQGES--------GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPG--KNGERGGP 599
Score = 33.5 bits (75), Expect = 0.11
Identities = 47/160 (29%), Positives = 58/160 (36%), Gaps = 42/160 (26%)
Query: 32 PG-PRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPL 90
PG P GPG +P PGS G + R P G + P+ PG + G
Sbjct: 539 PGSPGGPGSDGKPGPPGSQG------ESGRPGPPG-----PSGPRGQPG-----VMGF-- 580
Query: 91 ALHLPPPPRGVNCAVCRPG-YADPGSPGPQQPDEE---------PRATARGYEKEQDGAP 140
P P+G + A + G PG PGPQ P + P T G +K G P
Sbjct: 581 -----PGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPP 635
Query: 141 EKCKSSEL----GPPCQERLGAEDGEMEMEKRQVGRSGAP 176
L GPP + E G K G GAP
Sbjct: 636 GPQGLQGLPGTGGPPGENGKPGEPG----PKGDAGAPGAP 671
Score = 28.1 bits (61), Expect = 4.6
Identities = 45/172 (26%), Positives = 55/172 (31%), Gaps = 45/172 (26%)
Query: 29 QVEPGPRGPG--------MGQQPLQ--------------------------PGSP-GRGA 53
Q PGP GPG G Q LQ PG+P G+G
Sbjct: 617 QGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGD 676
Query: 54 GRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPLALHLPPPP--RGVNCAVCRPG-Y 110
R PP L AP G+ +G A P PP G PG
Sbjct: 677 AGAPGERGPP-----GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGER 731
Query: 111 ADPGSPGPQQPDEEPRATARGYEKEQDGAPEKCKSSELGPPCQERLGAEDGE 162
GSPGP+ EP +DG + + +GPP + GE
Sbjct: 732 GGLGSPGPKGDKGEPGGPGADGVPGKDG--PRGPTGPIGPPGPAGQPGDKGE 781
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 41.6 bits (96), Expect = 4e-04
Identities = 49/154 (31%), Positives = 57/154 (37%), Gaps = 16/154 (10%)
Query: 31 EPGPRGPGMGQQPLQPGSPGR-GAGRQRASRQP-PCGALTSLQAAPQQPPG-SAHTSLQG 87
+PGPRGP P PG PG+ G G+ QP P G + PPG G
Sbjct: 84 KPGPRGP-----PGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPG 138
Query: 88 SPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAPEKCKSSE 147
P L P RG PG PG PGP + A+G E E
Sbjct: 139 QP-GLRGEPGIRGDQGLRGPPG--PPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGE 195
Query: 148 LGPPCQERLGAEDGEMEMEKRQVGRSGAPPVGSA 181
GPP L ++G Q G GAP G A
Sbjct: 196 PGPPGDRGLKGDNG-----VGQPGLPGAPGQGGA 224
Score = 37.7 bits (86), Expect = 0.006
Identities = 49/169 (28%), Positives = 60/169 (35%), Gaps = 29/169 (17%)
Query: 32 PGPRG---PGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGS 88
PGP G PG+ P PG G + GA+ P+ PPG + G+
Sbjct: 231 PGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAV-----GPKGPPGVDGVGVPGA 285
Query: 89 --------PLALHLPPPPRGVNCAVCRPGYADPGSPGP---QQPDEEPRATARGYEKEQD 137
P P RG + GY PG PGP + P P E +D
Sbjct: 286 AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED 345
Query: 138 GAPEKCKSSELGPPCQERLGAEDGEMEMEKRQVGRSGAP-PVGSACAGG 185
G P E GP + LG G + GR G P P G A GG
Sbjct: 346 GEP-----GEQGP---QGLGGPPG-LPGSAGLPGRRGPPGPKGEAGPGG 385
Score = 34.7 bits (78), Expect = 0.049
Identities = 44/132 (33%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 31 EPGPRGP-GMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSP 89
EPG +GP G+G P PGS G R+ P G +A P PPG P
Sbjct: 347 EPGEQGPQGLGGPPGLPGSAGL------PGRRGPPGPKG--EAGPGGPPGVPGIRGDQGP 398
Query: 90 LALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAPEKCKSSELG 149
L P GV PG P PGP P EP T R GA + +LG
Sbjct: 399 SGLAGKP---GVPGERGLPGAHGP--PGPTGPKGEPGFTGRPGGPGVAGA--LGQKGDLG 451
Query: 150 PPCQERLGAEDG 161
P Q L G
Sbjct: 452 LPGQPGLRGPSG 463
Score = 32.0 bits (71), Expect = 0.32
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 27/86 (31%)
Query: 33 GPRG-PGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPLA 91
GP+G PG+ +P PG PG G + + A P PPG + GSP
Sbjct: 475 GPQGLPGLKGEPGLPGPPGEGRAGEPGT------------AGPTGPPG-----VPGSP-G 516
Query: 92 LHLPPPPRGVNCAVCRPGYADPGSPG 117
+ PP P G PG PG+PG
Sbjct: 517 ITGPPGPPG------PPG--PPGAPG 534
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 41.6 bits (96), Expect = 4e-04
Identities = 47/168 (27%), Positives = 60/168 (35%), Gaps = 31/168 (18%)
Query: 32 PGPRG----------PGMGQQPLQPGSPGRGAGRQRASRQPPCG--ALTSLQAAPQQPPG 79
PGP G PG P PGSPG G+ + P G + L P +P
Sbjct: 821 PGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGA 880
Query: 80 SAHTSLQGSP-----LALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEK 134
L G P L PP P+G PG+ PG G + P A EK
Sbjct: 881 HGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGF--PGERGKPGAEGCPGAKGEPGEK 938
Query: 135 EQDGAPE----KCKSSELGPPCQERLGAEDGEMEM--EKRQVGRSGAP 176
G P + +GPP ++GEM + +K G G P
Sbjct: 939 GMSGLPGDRGLRGAKGAIGPP------GDEGEMAIISQKGTPGEPGPP 980
Score = 36.6 bits (83), Expect = 0.013
Identities = 35/114 (30%), Positives = 40/114 (35%), Gaps = 24/114 (21%)
Query: 32 PGPRG-PGMGQQPLQPGSPGRGAGRQRASRQP--------PCGALTSLQAAPQQPPGSAH 82
PGP G PG+ + PGSPG R + P P G + AP+ P
Sbjct: 1200 PGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGP 1259
Query: 83 TSLQGSPLALHLPPPPRGVNCAVCRPGYAD-----------PGSPGPQQPDEEP 125
QG P P PRG PG D PG PGP P P
Sbjct: 1260 PGDQGPP----GPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPP 1309
Score = 33.9 bits (76), Expect = 0.083
Identities = 42/155 (27%), Positives = 56/155 (36%), Gaps = 21/155 (13%)
Query: 32 PGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPLA 91
PGP+G +PGSPG G AS + + + +P +P + G P
Sbjct: 1084 PGPKG--------EPGSPGC-PGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCP-G 1133
Query: 92 LHLPPPPRGVNCAVCRPG----YADPGSPGP---QQPDEEPRATARGYEKEQDGAPEKCK 144
H P RG + PG DPG PGP + P P K Q G
Sbjct: 1134 DHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASG 1193
Query: 145 SSELGPPCQERLGAEDGEMEMEKRQVGRSGAPPVG 179
++GPP + G E+ G G P G
Sbjct: 1194 LHDVGPPGPVGIPGLKG----ERGDPGSPGISPPG 1224
Score = 30.4 bits (67), Expect = 0.92
Identities = 39/152 (25%), Positives = 47/152 (30%), Gaps = 28/152 (18%)
Query: 32 PGPRGPGMGQQPLQPGSPG-RGAGRQRAS-------------RQPPCG--------ALTS 69
PGP PG P PG PG RG + R P G
Sbjct: 635 PGP--PGERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPG 692
Query: 70 LQAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATA 129
Q AP H G+P +P PP G + PG+ P P P +
Sbjct: 693 PQGAPGLSGSDGHKGRPGTPGTAEIPGPP-GFRGDMGDPGFGGEKGSSPVGPPGPPGSPG 751
Query: 130 RGYEKEQDGAPEKCKSSELGPPCQERLGAEDG 161
+K G P LGPP + L G
Sbjct: 752 VNGQK---GIPGDPAFGHLGPPGKRGLSGVPG 780
Score = 27.3 bits (59), Expect = 7.8
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 33 GPRGPGMGQQPLQP-GSPGR-GAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPL 90
GP GP Q P+ P G+PG G ++ R + PPG+A P
Sbjct: 65 GPPGPPGPQGPIGPLGAPGPIGLSGEKGMR------------GDRGPPGAAGDKGDKGPT 112
Query: 91 ALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAP 140
+ P G+ PG PGP P +P + + G P
Sbjct: 113 GVPGFPGLDGI-----------PGHPGPPGPRGKPGMSGHNGSRGDPGFP 151
>gi|178557734 microtubule-associated protein tau isoform 6 [Homo
sapiens]
Length = 776
Score = 40.8 bits (94), Expect = 7e-04
Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 40/148 (27%)
Query: 46 PGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGSPLALHLPP--------- 96
PG G+ + ++ PP AP+ PP SA +Q P PP
Sbjct: 477 PGQKGQANATRIPAKTPP---------APKTPPSSATKQVQRRP-----PPAGPRSERGE 522
Query: 97 PPRGVNCAVCRPGYADPGSPG-----------PQQPDEEPR--ATARGYEKEQDGAPEKC 143
PP+ + R GY+ PGSPG P P EP+ A R K A +
Sbjct: 523 PPKSGD----RSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRL 578
Query: 144 KSSELGPPCQERLGAEDGEMEMEKRQVG 171
+++ + P + + ++ G E K Q G
Sbjct: 579 QTAPVPMPDLKNVKSKIGSTENLKHQPG 606
Score = 31.6 bits (70), Expect = 0.41
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 18/125 (14%)
Query: 31 EPGPRGPGMGQQPLQ--PGSPGRGAGRQRASRQPPCGALTSLQAAPQQPPGSAHTSLQGS 88
EPGP PG+ Q + PG+P G + A+RQP + P H L
Sbjct: 139 EPGP--PGLSHQLMSGMPGAPLLPEGPREATRQPSGTGPEDTEGGRHAPELLKHQLLGD- 195
Query: 89 PLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGYEKEQDGAPEKCKSSEL 148
LH PP G PG ++ +E R QD P K ++
Sbjct: 196 ---LHQEGPP--------LKGAGGKERPGSKEEVDEDRDVDE--SSPQDSPPSKASPAQD 242
Query: 149 GPPCQ 153
G P Q
Sbjct: 243 GRPPQ 247
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,106,876
Number of Sequences: 37866
Number of extensions: 873910
Number of successful extensions: 6189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 918
Number of HSP's that attempted gapping in prelim test: 4644
Number of HSP's gapped (non-prelim): 2195
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.