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Search of human proteins with 239751006
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751006 PREDICTED: hypothetical protein [Homo sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756482 PREDICTED: hypothetical protein XP_002344999 [Homo ... 246 3e-66
gi|239751006 PREDICTED: hypothetical protein [Homo sapiens] 246 3e-66
gi|239745408 PREDICTED: hypothetical protein XP_002343489 [Homo ... 246 3e-66
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 33 0.050
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.065
gi|239756547 PREDICTED: hypothetical protein [Homo sapiens] 32 0.085
gi|239756183 PREDICTED: hypothetical protein [Homo sapiens] 32 0.085
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens] 32 0.085
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ... 32 0.085
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 32 0.085
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 32 0.085
gi|32171221 GRP1 (general receptor for phosphoinositides 1)-asso... 32 0.14
gi|126352608 elastin isoform e precursor [Homo sapiens] 31 0.25
gi|126352446 elastin isoform d precursor [Homo sapiens] 31 0.25
gi|126352322 elastin isoform c precursor [Homo sapiens] 31 0.25
gi|126352700 elastin isoform b precursor [Homo sapiens] 31 0.25
gi|126352440 elastin isoform a precursor [Homo sapiens] 31 0.25
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 31 0.25
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 31 0.25
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 31 0.25
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 31 0.25
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 31 0.25
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 30 0.32
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 30 0.32
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 30 0.32
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 30 0.42
gi|150417999 ubiquitin-conjugating enzyme E2Z [Homo sapiens] 30 0.42
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 30 0.55
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 30 0.55
>gi|239756482 PREDICTED: hypothetical protein XP_002344999 [Homo
sapiens]
Length = 120
Score = 246 bits (628), Expect = 3e-66
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG 60
MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG
Sbjct: 1 MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG 60
Query: 61 PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP
Sbjct: 61 PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
>gi|239751006 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 246 bits (628), Expect = 3e-66
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG 60
MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG
Sbjct: 1 MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG 60
Query: 61 PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP
Sbjct: 61 PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
>gi|239745408 PREDICTED: hypothetical protein XP_002343489 [Homo
sapiens]
Length = 120
Score = 246 bits (628), Expect = 3e-66
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG 60
MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG
Sbjct: 1 MKSQAAKAGRFLGQFSKLKAMVRGDLLQQVLAGPALLTAAVRSGCGYCCGWCVVALGTLG 60
Query: 61 PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP
Sbjct: 61 PGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 33.1 bits (74), Expect = 0.050
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 56 LGTLGPGECPARAAIGGVAAL-GASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLT 114
+G G P + I G L GA + GP G G PGLP + G E+ P G
Sbjct: 263 IGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKG-----ERGPAGLPG 317
Query: 115 GPG 117
GPG
Sbjct: 318 GPG 320
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 57 GTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRG----- 111
G GP P + G G GP +G PG+P + G+ E+ P G
Sbjct: 72 GHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPG--ERGPYGPKGDV 129
Query: 112 ---RLTGPGRGP 120
L GP RGP
Sbjct: 130 GPAGLPGP-RGP 140
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.7 bits (73), Expect = 0.065
Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 56 LGTLG-PGECPARAAIGGVAALGASVASLRAGP----GGLGAPGLPDVCGEAALTEKRPR 110
+G +G PG AR + G A G A+ R GP G G PG P G+ K PR
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG--GKGPR 910
Query: 111 GRLTGPGRGP 120
G TGP P
Sbjct: 911 GE-TGPAGRP 919
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 61 PGECPARAAIGGVAALGASVASLRAGPGG----LGAPGLPDVCGEAALTEKRPRG 111
PGE A G A G A+ AGP G G PG P G A E P+G
Sbjct: 307 PGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG--AKGEAGPQG 359
>gi|239756547 PREDICTED: hypothetical protein [Homo sapiens]
Length = 240
Score = 32.3 bits (72), Expect = 0.085
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 19/90 (21%)
Query: 31 LAGPALLTAAVRSGCGYCCGWCVVALGTLGPGECPARAAIGGVAALGASVASLRAGPGGL 90
L P LL + SGC C W + + G + P+RA SLR+GP
Sbjct: 4 LLSPVLLAEGLASGCRAC--WELASFWATGHRDPPSRARGP------PGRPSLRSGPPAS 55
Query: 91 GAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
GAP P P G GRGP
Sbjct: 56 GAPKTP-----------TPPNVRAGRGRGP 74
>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 63 ECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPG 117
+C R A+G A G +V RA PG +CG +A RP GRL PG
Sbjct: 20 KCQERGALG---APGRAVGVARASPGRRAG-----LCGASAALGTRPAGRLRPPG 66
>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 63 ECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPG 117
+C R A+G A G +V RA PG +CG +A RP GRL PG
Sbjct: 20 KCQERGALG---APGRAVGVARASPGRRAG-----LCGASAALGTRPAGRLRPPG 66
>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
sapiens]
Length = 229
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 63 ECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPG 117
+C R A+G A G +V RA PG +CG +A RP GRL PG
Sbjct: 20 KCQERGALG---APGRAVGVARASPGRRAG-----LCGASAALGTRPAGRLRPPG 66
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 32.3 bits (72), Expect = 0.085
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 62 GECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
GE G +G V + PG +G PG P V GE K+ L G RGP
Sbjct: 481 GEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPG-ARGP 538
Score = 29.3 bits (64), Expect = 0.72
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 77 GASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRGP 120
G S+ G G PG+P GE L+ + P+G + GP RGP
Sbjct: 587 GTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKG-VQGP-RGP 628
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 32.3 bits (72), Expect = 0.085
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 36 LLTAAVRSGCGYCCGWCVVALGTLGPGECPAR---AAIGGVAALGASVASLRAGPGGLGA 92
+LT G +C + L GE PA A + AA A+ S G G
Sbjct: 149 MLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANP 208
Query: 93 PGLPDVCGEAALTEKRPRGRLT-GPG 117
GLP G + + RPR R + GPG
Sbjct: 209 LGLPYYNGVGTVQKGRPRKRKSPGPG 234
>gi|32171221 GRP1 (general receptor for phosphoinositides
1)-associated scaffold protein [Homo sapiens]
Length = 395
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 60 GPGECPARAAIGGVAALGASVASLR-AGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPG 117
GP E PA G A + AS+R AGPGG G G P A TE R + L GPG
Sbjct: 311 GPAETPAVGPGPGPRAALSRSASVRCAGPGGGGGGGAPG----ALWTEAREQA-LCGPG 364
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 30.8 bits (68), Expect = 0.25
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 59 LGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
+GP + A AA A GA A + G GG G PG+P
Sbjct: 250 VGP-QAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 286
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 54 VALGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
V G G G P A A GA+V + G G LG G+P
Sbjct: 554 VGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIP 596
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 34 PALLTAAVRSGCGYC-CGWCVVALGTLGPGECPARAAIGGV--AALGASVASLRA--GPG 88
P + V G Y G + G LGPG P + GG+ A LGA + + A PG
Sbjct: 30 PGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPG 89
Query: 89 GLGAPGLPD 97
L G+ D
Sbjct: 90 ALVPGGVAD 98
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 56 LGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTG 115
LG P GGVA A+ + +AG G G PG+ + A +P G
Sbjct: 79 LGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQP-GAGVK 137
Query: 116 PGRGP 120
PG+ P
Sbjct: 138 PGKVP 142
Score = 25.8 bits (55), Expect = 7.9
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 32 AGPALLTAAVRSGCGYCCGWCVVALGTLGP--------GECPARAAIGGVAALGASVASL 83
A P L AA + G + LG LG G PA AA AA A+ L
Sbjct: 563 AVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGL 622
Query: 84 RA-------GPGGLGAPGLPDVCG 100
G GGLG PG+ + G
Sbjct: 623 VGAAGLGGLGVGGLGVPGVGGLGG 646
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 30.8 bits (68), Expect = 0.25
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 59 LGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
+GP + A AA A GA A + G GG G PG+P
Sbjct: 255 VGP-QAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 291
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 54 VALGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
V G G G P A A GA+V + G G LG G+P
Sbjct: 578 VGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIP 620
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 34 PALLTAAVRSGCGYC-CGWCVVALGTLGPGECPARAAIGGV--AALGASVASLRA--GPG 88
P + V G Y G + G LGPG P + GG+ A LGA + + A PG
Sbjct: 30 PGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPG 89
Query: 89 GLGAPGLPD 97
L G+ D
Sbjct: 90 ALVPGGVAD 98
Score = 26.2 bits (56), Expect = 6.1
Identities = 35/105 (33%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 32 AGPALLTAAVRSGCGYCCGWCVVALGTLGP--------GECPARAAIGGVAALGASVASL 83
A P L AA + G + LG LG G PA AA AA A+ L
Sbjct: 587 AVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGL 646
Query: 84 --RAGPGGLG--APGLPDVCG-----EAALTEKRPRGRLTGPGRG 119
AG GGLG G+P V G AA + G PG G
Sbjct: 647 VGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYGVAARPGFG 691
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 30.8 bits (68), Expect = 0.25
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 59 LGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
+GP + A AA A GA A + G GG G PG+P
Sbjct: 255 VGP-QAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 291
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 54 VALGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
V G G G P A A GA+V + G G LG G+P
Sbjct: 559 VGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIP 601
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 34 PALLTAAVRSGCGYC-CGWCVVALGTLGPGECPARAAIGGV--AALGASVASLRA--GPG 88
P + V G Y G + G LGPG P + GG+ A LGA + + A PG
Sbjct: 30 PGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPG 89
Query: 89 GLGAPGLPD 97
L G+ D
Sbjct: 90 ALVPGGVAD 98
Score = 26.2 bits (56), Expect = 6.1
Identities = 35/105 (33%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 32 AGPALLTAAVRSGCGYCCGWCVVALGTLGP--------GECPARAAIGGVAALGASVASL 83
A P L AA + G + LG LG G PA AA AA A+ L
Sbjct: 568 AVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGL 627
Query: 84 --RAGPGGLG--APGLPDVCG-----EAALTEKRPRGRLTGPGRG 119
AG GGLG G+P V G AA + G PG G
Sbjct: 628 VGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYGVAARPGFG 672
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 30.8 bits (68), Expect = 0.25
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 59 LGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
+GP + A AA A GA A + G GG G PG+P
Sbjct: 240 VGP-QAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 276
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 54 VALGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
V G G G P A A GA+V + G G LG G+P
Sbjct: 544 VGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIP 586
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 56 LGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTG 115
LG P GGVA A+ + +AG G G PG+ + A +P G
Sbjct: 69 LGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQP-GAGVK 127
Query: 116 PGRGP 120
PG+ P
Sbjct: 128 PGKVP 132
Score = 26.2 bits (56), Expect = 6.1
Identities = 35/105 (33%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 32 AGPALLTAAVRSGCGYCCGWCVVALGTLGP--------GECPARAAIGGVAALGASVASL 83
A P L AA + G + LG LG G PA AA AA A+ L
Sbjct: 553 AVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGL 612
Query: 84 --RAGPGGLG--APGLPDVCG-----EAALTEKRPRGRLTGPGRG 119
AG GGLG G+P V G AA + G PG G
Sbjct: 613 VGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYGVAARPGFG 657
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 30.8 bits (68), Expect = 0.25
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 59 LGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
+GP + A AA A GA A + G GG G PG+P
Sbjct: 250 VGP-QAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPGVP 286
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 54 VALGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLP 96
V G G G P A A GA+V + G G LG G+P
Sbjct: 573 VGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIP 615
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 34 PALLTAAVRSGCGYC-CGWCVVALGTLGPGECPARAAIGGV--AALGASVASLRA--GPG 88
P + V G Y G + G LGPG P + GG+ A LGA + + A PG
Sbjct: 30 PGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPG 89
Query: 89 GLGAPGLPD 97
L G+ D
Sbjct: 90 ALVPGGVAD 98
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 56 LGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTG 115
LG P GGVA A+ + +AG G G PG+ + A +P G
Sbjct: 79 LGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGGVPGVGGLGVSAGAVVPQP-GAGVK 137
Query: 116 PGRGP 120
PG+ P
Sbjct: 138 PGKVP 142
Score = 25.8 bits (55), Expect = 7.9
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 32 AGPALLTAAVRSGCGYCCGWCVVALGTLGP--------GECPARAAIGGVAALGASVASL 83
A P L AA + G + LG LG G PA AA AA A+ L
Sbjct: 582 AVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGL 641
Query: 84 RA-------GPGGLGAPGLPDVCG 100
G GGLG PG+ + G
Sbjct: 642 VGAAGLGGLGVGGLGVPGVGGLGG 665
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 30.8 bits (68), Expect = 0.25
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 57 GTLGPGECPARAAIGGVAALGASVASLRAGPGG--LGAPGLPDVCGEAALTEKRP 109
G GP PAR+A G A + A RAGP G APG G AA T + P
Sbjct: 70 GAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGR----GRAAATRRSP 120
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 30.8 bits (68), Expect = 0.25
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 56 LGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTG 115
LG PG+ P + +G A G ++SL GPGG G + G AA +
Sbjct: 572 LGWRLPGQAPGQELLGQ-ARPGGGLSSLSGGPGGGSGVGRWQLPGRAAAEDVAEAAAKVL 630
Query: 116 PGRGP 120
G GP
Sbjct: 631 EGAGP 635
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 62 GECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRG 119
G+ R GG G+S+ PG G PG+P GE+ + P G PG G
Sbjct: 1334 GQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIG 1391
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 62 GECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRG 119
G+ R GG G+S+ PG G PG+P GE+ + P G PG G
Sbjct: 919 GQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIG 976
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 62 GECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRG 119
G+ R GG G+S+ PG G PG+P GE+ + P G PG G
Sbjct: 1099 GQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIG 1156
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 30.8 bits (68), Expect = 0.25
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 54 VALGTLGPGECPARAAIGGVAALGASVAS-LRAGPGGLGAPGLPDVCGEAALTEKR---- 108
V +G G GE + ++G G + +R PG LG PGLP GE + +
Sbjct: 519 VGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGELGEPGLP---GEVGMRGPQGPPG 575
Query: 109 ---PRGRLTGPG 117
P GR+ PG
Sbjct: 576 LPGPPGRVGAPG 587
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 61 PGECPARAAIGGVAALGASVASLRAGPGG-LGAPGLPDVCGEAALTEKRPRGRLTG 115
PG R G V G A+ +AGP G +G PGLP + G+A ++ L G
Sbjct: 1276 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1331
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 87 PGGLGAPGLPDVCGEAA-LTEKRPRG--RLTGP 116
PG LG PG P + GE+ L + PRG LTGP
Sbjct: 412 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGP 444
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 62 GECPARAAIGGVAALG-ASVASLRAGPGGLGAPGLPDVCGEAALT-EKRPRGRLTGPG-R 118
GE AR G A G PG +G GLP GE T + P G PG R
Sbjct: 1040 GEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPR 1099
Query: 119 GP 120
GP
Sbjct: 1100 GP 1101
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 61 PGECPARAAIGGVAALGASVASLRAGPGG-LGAPGLPDVCGEAALTEKRPRGRLTG 115
PG R G V G A+ +AGP G +G PGLP + G+A ++ L G
Sbjct: 1255 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1310
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 87 PGGLGAPGLPDVCGEAA-LTEKRPRG--RLTGP 116
PG LG PG P + GE+ L + PRG LTGP
Sbjct: 391 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGP 423
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 62 GECPARAAIGGVAALG-ASVASLRAGPGGLGAPGLPDVCGEAALT-EKRPRGRLTGPG-R 118
GE AR G A G PG +G GLP GE T + P G PG R
Sbjct: 1019 GEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPR 1078
Query: 119 GP 120
GP
Sbjct: 1079 GP 1080
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 61 PGECPARAAIGGVAALGASVASLRAGPGG-LGAPGLPDVCGEAALTEKRPRGRLTG 115
PG R G V G A+ +AGP G +G PGLP + G+A ++ L G
Sbjct: 1362 PGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1417
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 87 PGGLGAPGLPDVCGEAA-LTEKRPRG--RLTGP 116
PG LG PG P + GE+ L + PRG LTGP
Sbjct: 498 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGP 530
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 62 GECPARAAIGGVAALG-ASVASLRAGPGGLGAPGLPDVCGEAALT-EKRPRGRLTGPG-R 118
GE AR G A G PG +G GLP GE T + P G PG R
Sbjct: 1126 GEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPR 1185
Query: 119 GP 120
GP
Sbjct: 1186 GP 1187
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 35 ALLTAAVRSGCGYCCGWCVVALGTLGPGECPARAAIGGVAALGASVASLRAGPGGLGAPG 94
A L AA G G L T GP + PA A +GG S R PG + APG
Sbjct: 56 AALPAATTPGPG---------LETAGPADAPAGAVVGG--------GSPRGRPGPVPAPG 98
Query: 95 L 95
L
Sbjct: 99 L 99
>gi|150417999 ubiquitin-conjugating enzyme E2Z [Homo sapiens]
Length = 354
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 68 AAIGGVAALG------ASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGRLTGPGRG 119
AA G A G A V + GG G P LPDV AA G GPG G
Sbjct: 9 AATAGAGAAGPGASSVAGVVGVSGSGGGFGPPFLPDVWAAAAAA-----GGAGGPGSG 61
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 29.6 bits (65), Expect = 0.55
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 18/79 (22%)
Query: 57 GTLGPGECPA-RAAIGGVAALGASVASLRAGP----------GGLGAPGLPDVCGEAALT 105
G +GP P R G A GA + GP GG G PG P GEA T
Sbjct: 321 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT 380
Query: 106 EKR-------PRGRLTGPG 117
R PRG PG
Sbjct: 381 GARGPEGAQGPRGEPGTPG 399
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 57 GTLGP----GECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGR 112
G GP G+ AR GGV +G R PG G PG + G +R
Sbjct: 480 GAPGPAGEEGKRGARGEPGGVGPIGPP--GERGAPGNRGFPGQDGLAGPKGAPGERGPSG 537
Query: 113 LTGP 116
L GP
Sbjct: 538 LAGP 541
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 29.6 bits (65), Expect = 0.55
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 18/79 (22%)
Query: 57 GTLGPGECPA-RAAIGGVAALGASVASLRAGP----------GGLGAPGLPDVCGEAALT 105
G +GP P R G A GA + GP GG G PG P GEA T
Sbjct: 252 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT 311
Query: 106 EKR-------PRGRLTGPG 117
R PRG PG
Sbjct: 312 GARGPEGAQGPRGEPGTPG 330
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 57 GTLGP----GECPARAAIGGVAALGASVASLRAGPGGLGAPGLPDVCGEAALTEKRPRGR 112
G GP G+ AR GGV +G R PG G PG + G +R
Sbjct: 411 GAPGPAGEEGKRGARGEPGGVGPIGPP--GERGAPGNRGFPGQDGLAGPKGAPGERGPSG 468
Query: 113 LTGP 116
L GP
Sbjct: 469 LAGP 472
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,272,512
Number of Sequences: 37866
Number of extensions: 266029
Number of successful extensions: 2043
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 815
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.