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Search of human proteins with 239750729
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750729 PREDICTED: hypothetical protein XP_002347517 [Homo
sapiens]
(263 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750729 PREDICTED: hypothetical protein XP_002347517 [Homo ... 563 e-161
gi|239752604 PREDICTED: similar to immunoglobulin lambda-like po... 67 1e-11
gi|113428456 PREDICTED: similar to mCG141871 [Homo sapiens] 42 7e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 7e-04
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 40 0.003
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 40 0.003
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 40 0.003
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 40 0.003
gi|148236531 hypothetical protein LOC339779 [Homo sapiens] 39 0.004
gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens] 39 0.005
gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens] 39 0.005
gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens] 39 0.006
gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens] 39 0.006
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 38 0.008
gi|4885123 CD80 antigen precursor [Homo sapiens] 38 0.010
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.013
gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens] 37 0.013
gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens] 37 0.013
gi|89941479 hypothetical protein LOC148137 [Homo sapiens] 37 0.013
gi|110618224 CD1A antigen precursor [Homo sapiens] 37 0.023
gi|27886561 nuclear factor of activated T-cells, cytoplasmic, ca... 36 0.030
gi|27886559 nuclear factor of activated T-cells, cytoplasmic, ca... 36 0.030
gi|27886555 nuclear factor of activated T-cells, cytoplasmic, ca... 36 0.030
gi|4758804 nuclear factor of activated T-cells, cytoplasmic, cal... 36 0.030
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.030
gi|4504399 major histocompatibility complex, class II, DM beta p... 36 0.030
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 36 0.030
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 36 0.030
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 36 0.030
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 36 0.039
>gi|239750729 PREDICTED: hypothetical protein XP_002347517 [Homo
sapiens]
Length = 263
Score = 563 bits (1452), Expect = e-161
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MTKTQQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPP 60
MTKTQQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPP
Sbjct: 1 MTKTQQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPP 60
Query: 61 PTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFF 120
PTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFF
Sbjct: 61 PTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFF 120
Query: 121 PQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTN 180
PQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTN
Sbjct: 121 PQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTN 180
Query: 181 PSQDVTVPCPVPPPPPCCHPRLSLHRPALEDLLLSSEANLTCTLTGLRDASGATFTWTRQ 240
PSQDVTVPCPVPPPPPCCHPRLSLHRPALEDLLLSSEANLTCTLTGLRDASGATFTWTRQ
Sbjct: 181 PSQDVTVPCPVPPPPPCCHPRLSLHRPALEDLLLSSEANLTCTLTGLRDASGATFTWTRQ 240
Query: 241 ASSMGSPHEGCAHHTADPGKHQH 263
ASSMGSPHEGCAHHTADPGKHQH
Sbjct: 241 ASSMGSPHEGCAHHTADPGKHQH 263
>gi|239752604 PREDICTED: similar to immunoglobulin lambda-like
polypeptide 1 [Homo sapiens]
Length = 490
Score = 67.4 bits (163), Expect = 1e-11
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 22/202 (10%)
Query: 52 RAPRHSWPPPTPGPASL---AGSLQRNGQLSGDPHAF---CVPASPTSPKVFPLSLDS-T 104
R PRH W PGP+ + G+ QL P + + AS P VFPL+ S +
Sbjct: 125 REPRH-WT--LPGPSWIDKNRGASAPWAQLCPTPRSHGTTSLAASTKGPSVFPLAPCSRS 181
Query: 105 PQDGNVVVACLVQGFFPQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQ 164
+ + CLV+ +FP EP++V+W+ FP +SG LY+ SS +T+ ++
Sbjct: 182 TSESTAALGCLVKDYFP-EPVTVSWNSGALTSGVHTFPAVLQSSG-LYSLSSVVTVTSSN 239
Query: 165 CPDGKSVTCHVKHY-TNPSQDVTVP------CPVPPPPPCCHPRLSLHRPALED-LLLSS 216
++ TC+V H +N D TV CP P PP P + L P +D L++S
Sbjct: 240 FGT-QTYTCNVDHKPSNTKVDKTVERKCCVECPPCPAPPVAGPSVFLFPPKPKDTLMISR 298
Query: 217 EANLTCTLTGL-RDASGATFTW 237
+TC + + + F W
Sbjct: 299 TPEVTCVVVDVSHEDPEVQFNW 320
Score = 43.1 bits (100), Expect = 2e-04
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 91 PTSPKVFPLSLDSTPQDGNVV-VACLVQGFFPQEPLSVTWSESGQ-NVTARNFPPSQDAS 148
P P+V+ L N V + CLV+GF+P + ++V W +GQ + PP D+
Sbjct: 386 PREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSD-IAVEWESNGQPENNYKTTPPMLDSD 444
Query: 149 GDLYTTSSQLTLPATQCPDGKSVTCHVKH 177
G + S+LT+ ++ G +C V H
Sbjct: 445 GSFF-LYSKLTVDKSRWQQGNVFSCSVMH 472
Score = 30.4 bits (67), Expect = 1.6
Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 27/169 (15%)
Query: 60 PPTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGF 119
PP P P +AG P F P P L + TP+ V C+V
Sbjct: 271 PPCPAPP-VAG-----------PSVFLFPPKPKDT----LMISRTPE-----VTCVVVDV 309
Query: 120 FPQEP-LSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHY 178
++P + W G V P ++ + S LT+ +GK C V +
Sbjct: 310 SHEDPEVQFNWYVDGMEVHNAKTKPREEQFNSTFRVVSVLTVVHQDWLNGKEYKCKVSNK 369
Query: 179 TNPSQ-DVTVPCPVPPPPPCCHPRLSLHRPALEDLLLSSEANLTCTLTG 226
P+ + T+ P P++ P+ E+ + ++ +LTC + G
Sbjct: 370 GLPAPIEKTISKTKGQPR---EPQVYTLPPSREE-MTKNQVSLTCLVKG 414
>gi|113428456 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 41.6 bits (96), Expect = 7e-04
Identities = 38/114 (33%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 7 PRPPASAGVARPHGQGIFHSRPRFPG----LRCSSSSVKRLWPPIAGATRAPRHSWPPPT 62
P PP S G ARP + F RP F L C S +RL G RAP H PPP
Sbjct: 192 PPPPPSPGAARP-ARFSFRLRPVFNASVQFLHCQLSRCRRL----RGVRRAPAHLTPPPP 246
Query: 63 PGPASL---------AGSLQRNGQLSGDPHAFCV--PASPTSPKVFPLSLDSTP 105
P P+ GS G + PH + P T P+ P S P
Sbjct: 247 PLPSRCLPQDEACADTGSGSAEGLAADGPHLHTLTQPIVVTVPRPPPRPPKSVP 300
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 41.6 bits (96), Expect = 7e-04
Identities = 59/239 (24%), Positives = 79/239 (33%), Gaps = 21/239 (8%)
Query: 9 PPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPPPTPGPASL 68
P A + +P G P F G + PP A A AP + PPP P PA+L
Sbjct: 222 PAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPS-PPAAPAPAAPAAAPPPPPPAPATL 280
Query: 69 AGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVT 128
A + G +G P A PA P + Q+G A P V+
Sbjct: 281 A---RPPGHPAGPPTA--APAVPP---------PAAAQNGGSAGAAPAPAPAAGGPAGVS 326
Query: 129 WSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQDVTVP 188
+ G A P A + T G + T P+ +P
Sbjct: 327 -GQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTA-ASMVIGPTMQGALP 384
Query: 189 CPVPPPPPCCHPRLSLHRPALEDLLLSSEANLTCTLTGLRDASGATFTWTRQASSMGSP 247
P PPP L + A + S T T +G+R AT T T A + P
Sbjct: 385 SPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIR----ATLTPTVLAPRLPQP 439
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 39.7 bits (91), Expect = 0.003
Identities = 49/178 (27%), Positives = 63/178 (35%), Gaps = 23/178 (12%)
Query: 5 QQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAP--RHSWPPPT 62
Q+P P +A H Q +P PG R R PP GA A RH PP+
Sbjct: 94 QEPPPLGAATAGSRHRQ-----KPPSPGSR------HRWEPPPPGAATATGSRHRREPPS 142
Query: 63 PGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQ 122
PG + R+ +G A PA+ P + TP G A +
Sbjct: 143 PGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR 202
Query: 123 EPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQL--TLPATQCPDGKSVTCHVKHY 178
V W + T R +G L SS L TL QC G+ C V H+
Sbjct: 203 RGAEVGWGKLEPQGTRR--------TGSLGVDSSPLSETLGPAQCGSGRRRACSVLHH 252
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 39.7 bits (91), Expect = 0.003
Identities = 49/178 (27%), Positives = 63/178 (35%), Gaps = 23/178 (12%)
Query: 5 QQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAP--RHSWPPPT 62
Q+P P +A H Q +P PG R R PP GA A RH PP+
Sbjct: 94 QEPPPLGAATAGSRHRQ-----KPPSPGSR------HRWEPPPPGAATATGSRHRREPPS 142
Query: 63 PGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQ 122
PG + R+ +G A PA+ P + TP G A +
Sbjct: 143 PGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR 202
Query: 123 EPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQL--TLPATQCPDGKSVTCHVKHY 178
V W + T R +G L SS L TL QC G+ C V H+
Sbjct: 203 RGAEVGWGKLEPQGTRR--------TGSLGVDSSPLSETLGPAQCGSGRRRACSVLHH 252
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 39.7 bits (91), Expect = 0.003
Identities = 49/178 (27%), Positives = 63/178 (35%), Gaps = 23/178 (12%)
Query: 5 QQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAP--RHSWPPPT 62
Q+P P +A H Q +P PG R R PP GA A RH PP+
Sbjct: 94 QEPPPLGAATAGSRHRQ-----KPPSPGSR------HRWEPPPPGAATATGSRHRREPPS 142
Query: 63 PGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQ 122
PG + R+ +G A PA+ P + TP G A +
Sbjct: 143 PGATTAGSCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSR 202
Query: 123 EPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQL--TLPATQCPDGKSVTCHVKHY 178
V W + T R +G L SS L TL QC G+ C V H+
Sbjct: 203 RGAEVGWGKLEPQGTRR--------TGSLGVDSSPLSETLGPAQCGSGRRRACSVLHH 252
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 39.7 bits (91), Expect = 0.003
Identities = 48/192 (25%), Positives = 71/192 (36%), Gaps = 28/192 (14%)
Query: 31 PGLRCSSSSVKRLWPPIAG-ATRAPRHSWPPPTPGPASLAGSLQRNGQLSGDP---HAFC 86
PG++ S SS+ L P G + P+ PPP P P S Q N +S P +
Sbjct: 381 PGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPSSF 440
Query: 87 VPASPTSPKVFPLSLDSTPQDGNV----VVACLVQGFFPQEPLSVTWSESGQNV------ 136
+P+ P P++ TPQ+ +V + V P + +E Q +
Sbjct: 441 LPSPSPQPSQSPVTA-RTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQL 499
Query: 137 ---------TARNFPPSQDASGDLYTTSSQ---LTLPATQCPDGKSVTCHVKHYTNPSQD 184
++D DL S LT P+ +CP C + D
Sbjct: 500 SKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIA-LEKLKND 558
Query: 185 VTVPCPVPPPPP 196
+ VP P PPP P
Sbjct: 559 MAVPTPPPPPVP 570
>gi|148236531 hypothetical protein LOC339779 [Homo sapiens]
Length = 412
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 45 PPIAGATRAPRHSWPPP-TPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLD- 102
PP + +T++ R S PPP +P P GS N + P++ +P+SPT LSL
Sbjct: 49 PPFS-STQSRRPSSPPPASPSPGFQFGSCDSNSDFAPHPYSPSLPSSPTFFHQNYLSLPR 107
Query: 103 ---STPQDGNVVVACLVQGFFPQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLT 159
S+P + +P PL+ ++S S ++ P Q S SS LT
Sbjct: 108 PRASSPSN---------HWLYPSPPLTPSFSPSQPQNSSLPHSPCQSPSHPEELHSSTLT 158
Query: 160 LPATQCP 166
P P
Sbjct: 159 SPGPSPP 165
>gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]
Length = 398
Score = 38.9 bits (89), Expect = 0.005
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 127 VTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQD-- 184
+TW + Q + +D +G +T SS +T T+ DG S+ C V H + D
Sbjct: 163 LTWRKGDQELHGEPTRIQEDPNGKTFTVSSSVTFQVTREDDGASIVCSVNHESLKGADRS 222
Query: 185 --------VTVPCPVPPPPPCCHPR 201
T + P PP HPR
Sbjct: 223 TSQRIEVLYTPTAMIRPDPP--HPR 245
>gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]
Length = 432
Score = 38.9 bits (89), Expect = 0.005
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 127 VTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQD-- 184
+TW + Q + +D +G +T SS +T T+ DG S+ C V H + D
Sbjct: 197 LTWRKGDQELHGEPTRIQEDPNGKTFTVSSSVTFQVTREDDGASIVCSVNHESLKGADRS 256
Query: 185 --------VTVPCPVPPPPPCCHPR 201
T + P PP HPR
Sbjct: 257 TSQRIEVLYTPTAMIRPDPP--HPR 279
>gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 306
Score = 38.5 bits (88), Expect = 0.006
Identities = 37/114 (32%), Positives = 43/114 (37%), Gaps = 20/114 (17%)
Query: 7 PRPPASAGVARPHGQGIFHSRPRFPG----LRCSSSSVKRLWPPIAGATRAPRHSWPPPT 62
P PP S G ARP + F RP F L C S +RL G RAP PPP
Sbjct: 140 PPPPPSPGAARP-ARFSFRLRPVFNASVQFLHCQLSRCRRL----RGVRRAPAPLTPPPP 194
Query: 63 PGPASL---------AGSLQRNGQLSGDPHAFCV--PASPTSPKVFPLSLDSTP 105
P P+ GS G + PH + P T P+ P S P
Sbjct: 195 PPPSRCLPQDEACADTGSGSAEGLAADGPHLHTLTQPIVVTVPRPPPRPPKSVP 248
>gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 38.5 bits (88), Expect = 0.006
Identities = 37/114 (32%), Positives = 43/114 (37%), Gaps = 20/114 (17%)
Query: 7 PRPPASAGVARPHGQGIFHSRPRFPG----LRCSSSSVKRLWPPIAGATRAPRHSWPPPT 62
P PP S G ARP + F RP F L C S +RL G RAP PPP
Sbjct: 192 PPPPPSPGAARP-ARFSFRLRPVFNASVQFLHCQLSRCRRL----RGVRRAPAPLTPPPP 246
Query: 63 PGPASL---------AGSLQRNGQLSGDPHAFCV--PASPTSPKVFPLSLDSTP 105
P P+ GS G + PH + P T P+ P S P
Sbjct: 247 PPPSRCLPQDEACADTGSGSAEGLAADGPHLHTLTQPIVVTVPRPPPRPPKSVP 300
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 38.1 bits (87), Expect = 0.008
Identities = 54/212 (25%), Positives = 72/212 (33%), Gaps = 39/212 (18%)
Query: 7 PRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWP------P 60
P P A + P S P P + ++S L P AT + S P P
Sbjct: 298 PSPSAPPSPSAPPSLQTLPSPPATPPSQATTS----LGSPTLQATHSFLPSPPLSPLATP 353
Query: 61 PTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFF 120
P P +LA P P+ P SP + PL+ S PQ N + L+Q F
Sbjct: 354 PPQAPPALAL-----------PPLQAPPSPPASPPLSPLATPS-PQAPNALAVHLLQAPF 401
Query: 121 ---PQEPLSVTWS-ESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVK 176
P P+ +S + V+ PPSQ L P Q P + +
Sbjct: 402 SPPPSPPVQAPFSPPASPPVSPSATPPSQ--------APPSLAAPPLQVPPSPPASPPMS 453
Query: 177 HYTNPSQDVTVPCPVPP-----PPPCCHPRLS 203
P P PP PPP P L+
Sbjct: 454 PSATPPPQAPPPLAAPPLQLAKPPPQAPPALA 485
Score = 29.6 bits (65), Expect = 2.8
Identities = 41/156 (26%), Positives = 51/156 (32%), Gaps = 29/156 (18%)
Query: 59 PPPTPGPASLAGSLQRNGQLSGDPHAFCVP---ASPTSPKVFPLSLDSTPQDGNVVVACL 115
PPP P A LQ P A P A P+ P FP +P
Sbjct: 458 PPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSAS------- 510
Query: 116 VQGFFPQEPLSVTWSESGQNVTAR--NFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTC 173
P PL+ ++ + A PPS AS L P T PD
Sbjct: 511 ----LPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRR----PPTPGPDTS---- 558
Query: 174 HVKHYTNPSQDVTVPCPVPPPPPCCHPRLSLHRPAL 209
+ P + + P PPPPP P +L P L
Sbjct: 559 ----VSGPRLTLAL-APGPPPPPSRSPSSTLSGPDL 589
>gi|4885123 CD80 antigen precursor [Homo sapiens]
Length = 288
Score = 37.7 bits (86), Expect = 0.010
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 112 VACLVQGFFPQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSV 171
+ C G FP+ LS W E+G+ + A N SQD +LY SS+L T S
Sbjct: 160 IICSTSGGFPEPHLS--WLENGEELNAINTTVSQDPETELYAVSSKLDFNMT---TNHSF 214
Query: 172 TCHVKH 177
C +K+
Sbjct: 215 MCLIKY 220
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 37.4 bits (85), Expect = 0.013
Identities = 41/154 (26%), Positives = 53/154 (34%), Gaps = 30/154 (19%)
Query: 59 PPPTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQG 118
PPP PA LQ P+ P SP + PL+ S PQ N + L+Q
Sbjct: 392 PPPQAPPALALPPLQ------------APPSPPASPPLSPLATPS-PQAPNALAVHLLQA 438
Query: 119 FF---PQEPLSVTWS-ESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCH 174
F P P+ +S + V+ PPSQ L P Q P +
Sbjct: 439 PFSPPPSPPVQAPFSPPASPPVSPSATPPSQ--------APPSLAAPPLQVPPSPPASPP 490
Query: 175 VKHYTNPSQDVTVPCPVPP-----PPPCCHPRLS 203
+ P P PP PPP P L+
Sbjct: 491 MSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALA 524
Score = 30.4 bits (67), Expect = 1.6
Identities = 57/209 (27%), Positives = 71/209 (33%), Gaps = 50/209 (23%)
Query: 2 TKTQQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPPP 61
T+ PRP SA RP +G P SS+S P A R P
Sbjct: 185 TEVGLPRPAPSAR-PRPPTEG--------PRKSVSSASEHSTTEPSPAARRRPSAGGGLQ 235
Query: 62 TPGPASLAGSLQ------RNGQLS-GDPHAFCVPASPTSPKVFPLSLDSTPQ-DGNVVVA 113
P SL+ S R+G + G P A PA P+ PK L PQ A
Sbjct: 236 RPASRSLSSSATPLSSPARSGPSARGTPRA---PAHPSQPKPKGLQALRPPQVTPPRKDA 292
Query: 114 CLVQGFFPQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTC 173
G PL+ PS A+ + + TLPAT P S+TC
Sbjct: 293 APALGPLSSSPLAT---------------PSPSAA---LQSQAPPTLPAT--PHSSSLTC 332
Query: 174 HVKHYTNPSQDVTVPCPVPPPPPCCHPRL 202
+ P P+ PP P P L
Sbjct: 333 QL----------ATPLPLAPPSPSAPPSL 351
Score = 29.6 bits (65), Expect = 2.8
Identities = 41/156 (26%), Positives = 51/156 (32%), Gaps = 29/156 (18%)
Query: 59 PPPTPGPASLAGSLQRNGQLSGDPHAFCVP---ASPTSPKVFPLSLDSTPQDGNVVVACL 115
PPP P A LQ P A P A P+ P FP +P
Sbjct: 497 PPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSAS------- 549
Query: 116 VQGFFPQEPLSVTWSESGQNVTAR--NFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTC 173
P PL+ ++ + A PPS AS L P T PD
Sbjct: 550 ----LPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRR----PPTPGPDTS---- 597
Query: 174 HVKHYTNPSQDVTVPCPVPPPPPCCHPRLSLHRPAL 209
+ P + + P PPPPP P +L P L
Sbjct: 598 ----VSGPRLTLAL-APGPPPPPSRSPSSTLSGPDL 628
>gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens]
Length = 1111
Score = 37.4 bits (85), Expect = 0.013
Identities = 53/194 (27%), Positives = 67/194 (34%), Gaps = 45/194 (23%)
Query: 25 HSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPPPTPGPASLAGSLQRNGQLSGDPHA 84
H +P PG SS V L PP G +P P P PG + NG
Sbjct: 52 HGQPAMPG----SSGVHHLSPP--GGGPSPGRHGPLPPPGYGTPLNCNNNNGM------- 98
Query: 85 FCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVTWSESGQNVTARNFPPS 144
+PK FP + P A G P P +SG + P
Sbjct: 99 ------GAAPKPFPGG--TGPPIKAEPKAPYAPGTLPDSP-----PDSGSEA----YSPQ 141
Query: 145 QDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQDVTVPCPVPPPPPCCHPRLSL 204
Q L T + P T C G V ++H P + P P PPPPP
Sbjct: 142 QVNEPHLLRTIT----PETLCHVG--VPSRLEHPPPPPAHLPGPPPPPPPPP-------- 187
Query: 205 HRPALE-DLLLSSE 217
H P L+ DL + +E
Sbjct: 188 HYPVLQRDLYMKAE 201
Score = 28.1 bits (61), Expect = 8.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 51 TRAPRHSWPPP---TPGPASLAGSLQR 74
TRAP WPP +PGP SL S+ R
Sbjct: 281 TRAPSPPWPPQGPLSPGPGSLPLSIAR 307
>gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens]
Length = 1151
Score = 37.4 bits (85), Expect = 0.013
Identities = 53/194 (27%), Positives = 67/194 (34%), Gaps = 45/194 (23%)
Query: 25 HSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPPPTPGPASLAGSLQRNGQLSGDPHA 84
H +P PG SS V L PP G +P P P PG + NG
Sbjct: 61 HGQPAMPG----SSGVHHLSPP--GGGPSPGRHGPLPPPGYGTPLNCNNNNGM------- 107
Query: 85 FCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVTWSESGQNVTARNFPPS 144
+PK FP + P A G P P +SG + P
Sbjct: 108 ------GAAPKPFPGG--TGPPIKAEPKAPYAPGTLPDSP-----PDSGSEA----YSPQ 150
Query: 145 QDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQDVTVPCPVPPPPPCCHPRLSL 204
Q L T + P T C G V ++H P + P P PPPPP
Sbjct: 151 QVNEPHLLRTIT----PETLCHVG--VPSRLEHPPPPPAHLPGPPPPPPPPP-------- 196
Query: 205 HRPALE-DLLLSSE 217
H P L+ DL + +E
Sbjct: 197 HYPVLQRDLYMKAE 210
Score = 28.1 bits (61), Expect = 8.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 51 TRAPRHSWPPP---TPGPASLAGSLQR 74
TRAP WPP +PGP SL S+ R
Sbjct: 290 TRAPSPPWPPQGPLSPGPGSLPLSIAR 316
>gi|89941479 hypothetical protein LOC148137 [Homo sapiens]
Length = 425
Score = 37.4 bits (85), Expect = 0.013
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 2 TKTQQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLW-PPIAGATRAPRHSWPP 60
T T P P +S RP ++ R R + S R W PP+ A R S
Sbjct: 266 TPTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKGDRAWVPPLTPALRTLAESLKA 325
Query: 61 PTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTP 105
PA AGS+ R + + P A P P SP ++ ++P
Sbjct: 326 KALPPA--AGSVIRKSEATPSPGACLQPEVPLSPAEQATTVKASP 368
>gi|110618224 CD1A antigen precursor [Homo sapiens]
Length = 327
Score = 36.6 bits (83), Expect = 0.023
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 99 LSLDSTPQDGNVVVACLVQGFFPQEPLSVTW--SESGQNVTAR-NFPPSQDASGDLYTTS 155
LS +P G++ + C V GF+P +P+ V W E Q T R + PS D + L T
Sbjct: 208 LSHGPSPGPGHLQLVCHVSGFYP-KPVWVMWMRGEQEQQGTQRGDILPSADGTWYLRAT- 265
Query: 156 SQLTLPATQCPDGKSVTCHVKHYTNPSQDVTV 187
L + A + D ++C VKH + QD+ +
Sbjct: 266 --LEVAAGEAAD---LSCRVKHSSLEGQDIVL 292
>gi|27886561 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 1 [Homo sapiens]
Length = 1075
Score = 36.2 bits (82), Expect = 0.030
Identities = 43/164 (26%), Positives = 58/164 (35%), Gaps = 16/164 (9%)
Query: 12 SAGVARPHGQGIFHSRPRFP--GLRCSSSSVKRLWPPIAGA-TRAPRHSWPPPTPGPASL 68
S G H H+ P G CS++ + L P+A T P P T GP S
Sbjct: 861 STGHLLAHTPHSVHTLPHLQSMGYHCSNTGQRSLSSPVADQITGQPSSQLQPITYGP-SH 919
Query: 69 AGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVT 128
+GS + P A + P SP++ P+ S P G P T
Sbjct: 920 SGSATTASPAASHPLASSPLSGPPSPQLQPMPYQS-PSSGTA-----------SSPSPAT 967
Query: 129 WSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVT 172
SGQ+ T S L PA+ PDG +V+
Sbjct: 968 RMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVS 1011
>gi|27886559 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 4 [Homo sapiens]
Length = 1045
Score = 36.2 bits (82), Expect = 0.030
Identities = 43/164 (26%), Positives = 58/164 (35%), Gaps = 16/164 (9%)
Query: 12 SAGVARPHGQGIFHSRPRFP--GLRCSSSSVKRLWPPIAGA-TRAPRHSWPPPTPGPASL 68
S G H H+ P G CS++ + L P+A T P P T GP S
Sbjct: 861 STGHLLAHTPHSVHTLPHLQSMGYHCSNTGQRSLSSPVADQITGQPSSQLQPITYGP-SH 919
Query: 69 AGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVT 128
+GS + P A + P SP++ P+ S P G P T
Sbjct: 920 SGSATTASPAASHPLASSPLSGPPSPQLQPMPYQS-PSSGTA-----------SSPSPAT 967
Query: 129 WSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVT 172
SGQ+ T S L PA+ PDG +V+
Sbjct: 968 RMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVS 1011
>gi|27886555 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 3 [Homo sapiens]
Length = 1065
Score = 36.2 bits (82), Expect = 0.030
Identities = 43/164 (26%), Positives = 58/164 (35%), Gaps = 16/164 (9%)
Query: 12 SAGVARPHGQGIFHSRPRFP--GLRCSSSSVKRLWPPIAGA-TRAPRHSWPPPTPGPASL 68
S G H H+ P G CS++ + L P+A T P P T GP S
Sbjct: 861 STGHLLAHTPHSVHTLPHLQSMGYHCSNTGQRSLSSPVADQITGQPSSQLQPITYGP-SH 919
Query: 69 AGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVT 128
+GS + P A + P SP++ P+ S P G P T
Sbjct: 920 SGSATTASPAASHPLASSPLSGPPSPQLQPMPYQS-PSSGTA-----------SSPSPAT 967
Query: 129 WSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVT 172
SGQ+ T S L PA+ PDG +V+
Sbjct: 968 RMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVS 1011
>gi|4758804 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 2 [Homo sapiens]
Length = 1068
Score = 36.2 bits (82), Expect = 0.030
Identities = 43/164 (26%), Positives = 58/164 (35%), Gaps = 16/164 (9%)
Query: 12 SAGVARPHGQGIFHSRPRFP--GLRCSSSSVKRLWPPIAGA-TRAPRHSWPPPTPGPASL 68
S G H H+ P G CS++ + L P+A T P P T GP S
Sbjct: 861 STGHLLAHTPHSVHTLPHLQSMGYHCSNTGQRSLSSPVADQITGQPSSQLQPITYGP-SH 919
Query: 69 AGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVT 128
+GS + P A + P SP++ P+ S P G P T
Sbjct: 920 SGSATTASPAASHPLASSPLSGPPSPQLQPMPYQS-PSSGTA-----------SSPSPAT 967
Query: 129 WSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVT 172
SGQ+ T S L PA+ PDG +V+
Sbjct: 968 RMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVS 1011
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 36.2 bits (82), Expect = 0.030
Identities = 43/167 (25%), Positives = 56/167 (33%), Gaps = 32/167 (19%)
Query: 45 PPIAGATRAPRH--SWPPPTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLD 102
PP+ G P + PPP P LQ P+ P SP + PL+
Sbjct: 601 PPLQGLPSPPLSPLATPPPQAPPXLALPPLQ------------APPSPPASPPLSPLATP 648
Query: 103 STPQDGNVVVACLVQGFF---PQEPLSVTWS-ESGQNVTARNFPPSQDASGDLYTTSSQL 158
S PQ N + L+Q F P P+ +S + V+ PPSQ L
Sbjct: 649 S-PQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQ--------APPSL 699
Query: 159 TLPATQCPDGKSVTCHVKHYTNPSQD-----VTVPCPVPPPPPCCHP 200
P Q P + + P P VPP PP P
Sbjct: 700 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPP 746
Score = 33.9 bits (76), Expect = 0.15
Identities = 55/210 (26%), Positives = 66/210 (31%), Gaps = 42/210 (20%)
Query: 8 RPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPPPTPGPAS 67
RP A G+ RP + + S SS R P G RAP H P G +
Sbjct: 227 RPSAGGGLQRPASRSLSSSATPL-------SSPARSGPSARGTPRAPAHPSQPKPKGLQA 279
Query: 68 LAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLD--STPQDGNVVVACLVQGFFPQEPL 125
L P P +P + PLS +TP + PL
Sbjct: 280 LR------------PPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPL 327
Query: 126 SVTWSESGQNVTARNF-PPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQD 184
T S T PPS A L T S P +Q P PS
Sbjct: 328 PATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAP--------------PSM- 372
Query: 185 VTVPCPVPPP----PPCCHPRLSLHRPALE 210
T P PP PP P SL P+L+
Sbjct: 373 TTPPMQAPPSLQTIPPIQVPH-SLTSPSLQ 401
Score = 32.3 bits (72), Expect = 0.43
Identities = 60/209 (28%), Positives = 72/209 (34%), Gaps = 47/209 (22%)
Query: 2 TKTQQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPPP 61
T+ PRP SA RP +G P SS+S P A R P
Sbjct: 185 TEVGLPRPAPSAR-PRPPTEG--------PRKSVSSASEHSTTEPSPAARRRPSAGGGLQ 235
Query: 62 TPGPASLAGSLQ------RNGQLS-GDPHAFCVPASPTSPKVFPLSLDSTPQ-DGNVVVA 113
P SL+ S R+G + G P A PA P+ PK L PQ A
Sbjct: 236 RPASRSLSSSATPLSSPARSGPSARGTPRA---PAHPSQPKPKGLQALRPPQVTPPRKDA 292
Query: 114 CLVQGFFPQEPLSVTWSESGQNVTARNFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTC 173
G PL+ T S SG AR PP +A+ T TLP
Sbjct: 293 APALGPLSSSPLA-TPSPSGTK--ARPVPPPDNAA-----TPLPATLP------------ 332
Query: 174 HVKHYTNPSQDVTVPCPVPPPPPCCHPRL 202
PS + P P+ PP P P L
Sbjct: 333 -------PSPPLATPLPLAPPSPSAPPSL 354
Score = 31.6 bits (70), Expect = 0.74
Identities = 54/214 (25%), Positives = 76/214 (35%), Gaps = 37/214 (17%)
Query: 1 MTKTQQPRPPASAGVARPHGQGIFHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHSWPP 60
M+ + P P A +A P Q + S P P + S++ R+ P +A AP PP
Sbjct: 716 MSPSATPPPQAPPPLAAPPLQ-VPPSPPASPPMSPSATPPPRVPPLLA----APPLQVPP 770
Query: 61 PTPGPASLAGSLQRNGQLSGDPHAFCVP---ASPTSPKVFPLSLDSTPQDGNVVVACLVQ 117
P ++ + Q P A P A P+ P FP +P
Sbjct: 771 SPPASLPMSPLAKPPPQA---PPALATPPLQALPSPPASFPGQAPFSPSAS--------- 818
Query: 118 GFFPQEPLSVTWSESGQNVTAR--NFPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHV 175
P PL+ ++ + A PPS AS L P T PD
Sbjct: 819 --LPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRR----PPTPGPDTS------ 866
Query: 176 KHYTNPSQDVTVPCPVPPPPPCCHPRLSLHRPAL 209
+ P + + P PPPPP P +L P L
Sbjct: 867 --VSGPRLTLAL-APGPPPPPSRSPSSTLSGPDL 897
>gi|4504399 major histocompatibility complex, class II, DM beta
precursor [Homo sapiens]
Length = 263
Score = 36.2 bits (82), Expect = 0.030
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 110 VVVACLVQGFFPQEPLSVTWSESGQNVTARNFP-PSQDASGD-LYTTSSQLTLPATQCPD 167
V++AC V GF+P E +++TW ++G+ V + + +GD Y T S L L +
Sbjct: 131 VMLACYVWGFYPAE-VTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSY--- 186
Query: 168 GKSVTCHVKHYTNP 181
G + TC V+H P
Sbjct: 187 GDTYTCVVEHIGAP 200
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23
[Homo sapiens]
Length = 1636
Score = 36.2 bits (82), Expect = 0.030
Identities = 50/180 (27%), Positives = 67/180 (37%), Gaps = 31/180 (17%)
Query: 28 PRFPGLRCSSSSVKRLWP-PIAGATRAPRHSWPPPTPGPASLAGSLQRNGQLSGDPHAFC 86
PR P S++ P P +T H P P P + +G Q + PHA
Sbjct: 756 PRLPDTFLGSATPLHFPPSPFPSSTGPGPHYLSGPLP-PGTYSGPTQLIQPRAPGPHAMP 814
Query: 87 VPASPT---SPKVFP---LSLDSTPQDGNVVVACLVQGFFPQEPLSVTWSESGQNVTARN 140
V P +P P L S+PQ G VV+ G P P++ S
Sbjct: 815 VAPGPALYPAPAYTPELGLVPRSSPQHG--VVSSPYVGVGPAPPVAGLPSA--------- 863
Query: 141 FPPSQDASGDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQDVTVPCPVPPPPPCCHP 200
PP Q + +L + PAT D S+ + +T P P P P PPP C P
Sbjct: 864 -PPPQFSGPEL----AMAVRPATTTVD--SIQAPIPSHTAPR-----PNPTPAPPPPCFP 911
Score = 28.1 bits (61), Expect = 8.2
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 188 PCPVPPPPPCCHPRLSLHRPALEDLLLSS 216
P PVPP PP P L R A LLSS
Sbjct: 1094 PGPVPPRPPAAEPPPCLRRGAAAADLLSS 1122
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 36.2 bits (82), Expect = 0.030
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 18 PHGQGI--FHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHS-----WPPPTPGPASLA- 69
P+GQ + S P G S+ R+W P G + P H W PPTPGP +
Sbjct: 62 PNGQDMSTMESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVP 121
Query: 70 GSLQRNGQLSGD 81
S N Q SG+
Sbjct: 122 PSEDSNSQDSGE 133
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 36.2 bits (82), Expect = 0.030
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 18 PHGQGI--FHSRPRFPGLRCSSSSVKRLWPPIAGATRAPRHS-----WPPPTPGPASLA- 69
P+GQ + S P G S+ R+W P G + P H W PPTPGP +
Sbjct: 62 PNGQDMSTMESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVP 121
Query: 70 GSLQRNGQLSGD 81
S N Q SG+
Sbjct: 122 PSEDSNSQDSGE 133
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 35.8 bits (81), Expect = 0.039
Identities = 62/225 (27%), Positives = 80/225 (35%), Gaps = 21/225 (9%)
Query: 36 SSSSVKRLWPPIAGATRAPRHSWPPPTPGPASLAGSLQRNGQLSGDPHAFCV-----PAS 90
S++S+ R PP A TR P + P P AS G+ R +G P + AS
Sbjct: 327 STASISRT-PPRASITRTPSRASPTGKPSTASPTGTPSR-ASPTGSPSTASLTGLSSTAS 384
Query: 91 PTS--PKVFPLSLDSTPQDGNVVVACLVQGFFPQEPLSVTWSESGQNVTARNFPPSQDAS 148
PT P+ P ST G + S+T +S + T PP +
Sbjct: 385 PTGTPPRASPTGTPSTASLTRKPPRASPTGMLSR--TSITKMDSTASPT--RTPPRASPT 440
Query: 149 GDLYTTSSQLTLPATQCPDGKSVTCHVKHYTNPSQDVTVPCPVPPPPPCCHPRLSLHRPA 208
G S T P+ P G T +PS P P R SL R
Sbjct: 441 GTPPRASPTGT-PSRASPTGTQST--ASPTGSPSTASPTGSPSTASPTGSPSRASLTRTP 497
Query: 209 LEDLLLSSEANLTCTLTGLRDASGATFTWT-RQASSMGSPHEGCA 252
L E+ + T R S A+ TWT AS GSP A
Sbjct: 498 SRASLTKMESTASIT----RTPSRASPTWTPSTASPTGSPSTALA 538
Score = 28.5 bits (62), Expect = 6.2
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 47 IAGATRAPRHSWPPPTPGPASLAGSLQRNGQLSGDPHAFCVPASPTSPKVFPLSLDSTP 105
+A TR P + P TP ASL G+ R L+G P + +P+ SL TP
Sbjct: 1 MAPPTRTPSRASPTRTPSTASLTGTPSR-ASLTGTPSTASLMGTPSR-----ASLTGTP 53
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,861,547
Number of Sequences: 37866
Number of extensions: 899852
Number of successful extensions: 7115
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 6476
Number of HSP's gapped (non-prelim): 855
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.