Guide to the Human Genome
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Name: CD80 Sequence: fasta or formatted (288aa) NCBI GI: 4885123
Description:

CD80 antigen precursor

Referenced in:

B cells
Butyrophilin Family
T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         11           1
 C cysteine            3.5         10           2
 D aspartate           3.1          9           1
 E glutamate           7.6         22           2
 F phenylalanine       4.9         14           2
 G glycine             4.2         12           2
 H histidine           3.1          9           1
 I isoleucine          6.2         18           2
 K lysine              4.9         14           2
 L leucine             9.0         26           2
 M methionine          2.4          7           2
 N asparagine          6.2         18           2
 P proline             4.9         14           1
 Q glutamine           2.4          7           1
 R arginine            6.2         18           3
 S serine              8.0         23           2
 T threonine           8.0         23           2
 V valine              6.9         20           2
 W tryptophan          1.7          5           1
 Y tyrosine            2.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD80 antigen precursor 
CD86                  0.077   CD86 antigen isoform 2 precursor 
CD86                  0.077   CD86 antigen isoform 1 
ICOSLG                0.061   inducible T-cell co-stimulator ligand 
CD274                 0.056   CD274 molecule 
CD276                 0.049   CD276 antigen isoform b 
CD276                 0.049   CD276 antigen isoform a 
CADM2                 0.047   immunoglobulin superfamily, member 4D 
ALCAM                 0.042   activated leukocyte cell adhesion molecule 
BTNL2                 0.040   butyrophilin-like 2 
CADM3                 0.039   cell adhesion molecule 3 isoform 2 
CADM3                 0.039   cell adhesion molecule 3 isoform 1 
JAM3                  0.037   junctional adhesion molecule 3 precursor 
BTN1A1                0.035   butyrophilin, subfamily 1, member A1 
ASAM                  0.035   adipocyte-specific adhesion molecule 
AMIGO3                0.033   adhesion molecule with Ig-like domain 3 
SIRPG                 0.032   signal-regulatory protein gamma isoform 3 precursor ...
SIRPG                 0.032   signal-regulatory protein gamma isoform 1 precursor ...
SIRPB1                0.030   signal-regulatory protein beta 1 isoform 1 precurso...
SIRPA                 0.030   signal-regulatory protein alpha precursor 
SIRPA                 0.030   signal-regulatory protein alpha precursor 
SIRPA                 0.030   signal-regulatory protein alpha precursor 
SIRPB1                0.030   signal-regulatory protein beta 1 isoform 3 precurso...
IGSF21                0.026   immunoglobin superfamily, member 21 
HMCN1                 0.026   hemicentin 1 
PDCD1LG2              0.026   programmed cell death 1 ligand 2 
IGSF9B                0.026   immunoglobulin superfamily, member 9B 
HEPACAM               0.025   hepatocyte cell adhesion molecule 
VTCN1                 0.025   V-set domain containing T cell activation inhibitor ...
MCAM                  0.025   melanoma cell adhesion molecule 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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