Guide to the Human Genome
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Name: LOC100289702 Sequence: fasta or formatted (263aa) NCBI GI: 239750729
Description:

PREDICTED: hypothetical protein XP_002347517

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         21           1
 C cysteine            3.8         10           2
 D aspartate           3.8         10           1
 E glutamate           1.9          5           1
 F phenylalanine       3.0          8           2
 G glycine             7.2         19           1
 H histidine           4.9         13           2
 I isoleucine          0.8          2           1
 K lysine              2.3          6           1
 L leucine             8.0         21           3
 M methionine          0.8          2           1
 N asparagine          2.3          6           1
 P proline            14.4         38           5
 Q glutamine           5.7         15           2
 R arginine            5.3         14           1
 S serine             11.4         30           4
 T threonine           8.4         22           2
 V valine              5.7         15           3
 W tryptophan          1.5          4           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347517 
LOC100294459          0.078   PREDICTED: similar to immunoglobulin lambda-like po...
LOC645781             0.032   PREDICTED: similar to mCG141871 
TAF4                  0.032   TBP-associated factor 4 
LOC100293249          0.028   PREDICTED: similar to hCG2040393 
LOC100291245          0.028   PREDICTED: hypothetical protein XP_002347031 
LOC100287846          0.028   PREDICTED: hypothetical protein XP_002342883 
MED15                 0.028   mediator complex subunit 15 isoform b 
C2orf53               0.026   hypothetical protein LOC339779 
CADM3                 0.026   cell adhesion molecule 3 isoform 2 
CADM3                 0.026   cell adhesion molecule 3 isoform 1 
LOC645781             0.026   PREDICTED: similar to mCG141871 
LOC645781             0.026   PREDICTED: similar to mCG141871 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
CD80                  0.024   CD80 antigen precursor 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
C11orf9               0.022   hypothetical protein LOC745 isoform 1 
C11orf9               0.022   hypothetical protein LOC745 isoform 2 
C19orf55              0.022   hypothetical protein LOC148137 
CD1A                  0.022   CD1A antigen precursor 
NFATC3                0.020   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.020   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.020   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.020   nuclear factor of activated T-cells, cytoplasmic, cal...
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
HLA-DMB               0.020   major histocompatibility complex, class II, DM beta p...
PTPN23                0.020   protein tyrosine phosphatase, non-receptor type 23 [...
SFRS18                0.020   splicing factor, arginine/serine-rich 130 
SFRS18                0.020   splicing factor, arginine/serine-rich 130 
LOC100133756          0.020   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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