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Search of human proteins with 239750719
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750719 PREDICTED: hypothetical protein XP_002347491 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756179 PREDICTED: hypothetical protein [Homo sapiens] 267 1e-72
gi|239750719 PREDICTED: hypothetical protein XP_002347491 [Homo ... 267 1e-72
gi|239745025 PREDICTED: hypothetical protein XP_002343301 [Homo ... 251 1e-67
gi|38176300 nestin [Homo sapiens] 30 0.46
gi|30409982 lysosomal associated transmembrane protein 4 beta [H... 30 0.60
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 29 0.79
gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 29 0.79
gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 29 0.79
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 29 0.79
gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 ... 29 0.79
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 28 1.8
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 28 1.8
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 28 2.3
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 28 2.3
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 27 3.0
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens] 27 3.0
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens] 27 3.0
gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens] 27 5.1
gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens] 27 5.1
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 5.1
gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 27 5.1
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 5.1
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 27 5.1
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 27 5.1
gi|28557777 immunoglobulin-like domain containing receptor 1 [Ho... 27 5.1
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 26 6.7
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 26 6.7
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 26 6.7
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 26 8.7
>gi|239756179 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 267 bits (683), Expect = 1e-72
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT
Sbjct: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
Query: 61 RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 120
RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL
Sbjct: 61 RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 120
Query: 121 WVF 123
WVF
Sbjct: 121 WVF 123
>gi|239750719 PREDICTED: hypothetical protein XP_002347491 [Homo
sapiens]
Length = 123
Score = 267 bits (683), Expect = 1e-72
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT
Sbjct: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
Query: 61 RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 120
RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL
Sbjct: 61 RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 120
Query: 121 WVF 123
WVF
Sbjct: 121 WVF 123
>gi|239745025 PREDICTED: hypothetical protein XP_002343301 [Homo
sapiens]
Length = 119
Score = 251 bits (641), Expect = 1e-67
Identities = 119/123 (96%), Positives = 119/123 (96%), Gaps = 4/123 (3%)
Query: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT
Sbjct: 1 MGKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVT 60
Query: 61 RMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 120
RMPMFSLLRETG TDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL
Sbjct: 61 RMPMFSLLRETG----TDYRSSRLRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGPHSL 116
Query: 121 WVF 123
WVF
Sbjct: 117 WVF 119
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 30.0 bits (66), Expect = 0.46
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 5 EGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFP---LDHT 47
E S L G+ +DP P R G R +E A RG E FP L HT
Sbjct: 1153 EFSELPGKSRDPWEPPREG---REESEAEAPRGAEEAFPAETLGHT 1195
>gi|30409982 lysosomal associated transmembrane protein 4 beta
[Homo sapiens]
Length = 317
Score = 29.6 bits (65), Expect = 0.60
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 12 RVQDPCPPVRP-----------GALGRNPAEERAGRGLGEGFPLDHTECG 50
RV P PP RP GA G +PAE R+ RG+ E P H G
Sbjct: 6 RVTWPSPP-RPLPVPAAAAVAFGAKGTDPAEARSSRGIEEAGPRAHGRAG 54
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 29.3 bits (64), Expect = 0.79
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 24 ALGRNP---AEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFSLLRETGPAWR 76
ALG+ P A G G G +H CG G++ + +V +GP WR
Sbjct: 71 ALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVA----------SGPRWR 116
>gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 29.3 bits (64), Expect = 0.79
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 24 ALGRNP---AEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFSLLRETGPAWR 76
ALG+ P A G G G +H CG G++ + +V +GP WR
Sbjct: 71 ALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVA----------SGPRWR 116
>gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 29.3 bits (64), Expect = 0.79
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 24 ALGRNP---AEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFSLLRETGPAWR 76
ALG+ P A G G G +H CG G++ + +V +GP WR
Sbjct: 71 ALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVA----------SGPRWR 116
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 29.3 bits (64), Expect = 0.79
Identities = 37/128 (28%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 9 LEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFP------LDHTECGTGLDTITLVTRM 62
LEG + PP+R LG +PA+ G G+G P H T ++ T
Sbjct: 197 LEGTAER-LPPIRASGLGADPAQAVVSPGQGDGVPGPAQAFPGHLPLPTKVEAKAPETPS 255
Query: 63 PMFSLLRETGPA-WRTDYRSSRLRHAPRHPVRRAGQGSWCSR---------MRFLPAHQA 112
E PA R + S L AP AGQG+ SR R P
Sbjct: 256 ENLRTGLELAPAPGRVNVVSPSLEVAP-----GAGQGASSSRPDPEPLEEGTRLTPGPGP 310
Query: 113 WLPGPHSL 120
PGP L
Sbjct: 311 QCPGPPGL 318
>gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
[Homo sapiens]
Length = 507
Score = 29.3 bits (64), Expect = 0.79
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 59 VTRMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWCSRM--RFLPAHQAWLPG 116
V R FS L+ PA R R++R +H W R RFL AH AWLP
Sbjct: 400 VLREEEFSPLKNAEPADRDSPRTARQALLTQHY-------RWALRAGARFLDAHGAWLPE 452
Query: 117 PHSL 120
SL
Sbjct: 453 LPSL 456
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 28.1 bits (61), Expect = 1.8
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 2 GKLEGSSLEGRVQD----PCPPVRPGALGRNPAEERAGRGLGEGF 42
G+ EG+S E R++ P P PGAL R AGR G GF
Sbjct: 224 GRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRP-GPGF 267
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 28.1 bits (61), Expect = 1.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 17 CPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTG 52
C PV G N E R+G +G G P H C G
Sbjct: 303 CCPVCDGCF-LNGREHRSGEPVGSGDPCSHCRCANG 337
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 28.1 bits (61), Expect = 1.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 17 CPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTG 52
C PV G N E R+G +G G P H C G
Sbjct: 245 CCPVCDGCF-LNGREHRSGEPVGSGDPCSHCRCANG 279
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 27.7 bits (60), Expect = 2.3
Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 8 SLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFSL 67
S+ PC P + R G G G +H CG GL T ++L
Sbjct: 273 SMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWAL 332
Query: 68 LR--ETGPAWRTDYRSSR-LRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGP 117
G W + + + R H R G G+ S PA + W P P
Sbjct: 333 AARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE----PA-RVWSPPP 380
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 27.7 bits (60), Expect = 2.3
Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 8 SLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFSL 67
S+ PC P + R G G G +H CG GL T ++L
Sbjct: 273 SMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWAL 332
Query: 68 LR--ETGPAWRTDYRSSR-LRHAPRHPVRRAGQGSWCSRMRFLPAHQAWLPGP 117
G W + + + R H R G G+ S PA + W P P
Sbjct: 333 AARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASE----PA-RVWSPPP 380
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 27.3 bits (59), Expect = 3.0
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 18 PPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVTRMPMFSLLRETGPAWRT 77
PP RPG+ G P AG LG G P + G D ++P G R+
Sbjct: 789 PPARPGSRGPAPGPPPAGSALG-GAPPVPSRPGASPDPFGPPPQVPSRPNRAPPGVPSRS 847
Query: 78 DYRSSRLRHAPRHP 91
S +PR P
Sbjct: 848 GQASPSRPESPRPP 861
>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
Length = 377
Score = 27.3 bits (59), Expect = 3.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 54 DTITLVTRMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAG 96
D TL M L R W + R+ +H P+HPV +G
Sbjct: 274 DAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSG 316
>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
Length = 392
Score = 27.3 bits (59), Expect = 3.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 54 DTITLVTRMPMFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAG 96
D TL M L R W + R+ +H P+HPV +G
Sbjct: 274 DAQTLQKLADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSG 316
>gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens]
Length = 2986
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 12/43 (27%)
Query: 4 LEGSSLEGRVQDP--------CPPVRPGALGRNPAEERAGRGL 38
LEGSS G ++DP PP P +NP EE+ + L
Sbjct: 1889 LEGSSYRGSLKDPAGCLNEGMAPPTPP----KNPEEEQKAKAL 1927
>gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens]
Length = 1289
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 12/43 (27%)
Query: 4 LEGSSLEGRVQDP--------CPPVRPGALGRNPAEERAGRGL 38
LEGSS G ++DP PP P +NP EE+ + L
Sbjct: 192 LEGSSYRGSLKDPAGCLNEGMAPPTPP----KNPEEEQKAKAL 230
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 10/33 (30%)
Query: 16 PCPPVRP---------GALGRNPAEERAGRGLG 39
P PPV P GA+GR P ERAG G+G
Sbjct: 35 PPPPVTPAALRVLGAAGAVGRKPLAERAG-GIG 66
>gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 312
Score = 26.6 bits (57), Expect = 5.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 5 EGSSLEGRVQDPCPPVRPGALGRNPAE-ERAGRGLGEGFPLDHTEC 49
+G+ E P P P LGR P E+A RG G P +H C
Sbjct: 178 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG---PEEHLSC 220
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 10/33 (30%)
Query: 16 PCPPVRP---------GALGRNPAEERAGRGLG 39
P PPV P GA+GR P ERAG G+G
Sbjct: 35 PPPPVTPAALRVLGAAGAVGRKPLAERAG-GIG 66
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 10/33 (30%)
Query: 16 PCPPVRP---------GALGRNPAEERAGRGLG 39
P PPV P GA+GR P ERAG G+G
Sbjct: 35 PPPPVTPAALRVLGAAGAVGRKPLAERAG-GIG 66
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 26.6 bits (57), Expect = 5.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 18 PPVRPGALGRNPAEERAGRGLGEGFPL 44
PP RPG+ G P AG LG P+
Sbjct: 789 PPARPGSRGPAPGPPPAGSALGGAPPV 815
>gi|28557777 immunoglobulin-like domain containing receptor 1 [Homo
sapiens]
Length = 502
Score = 26.6 bits (57), Expect = 5.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 69 RETGPAWRTDYRSSRLRHAPRH 90
RE P+W +RSSRL +P H
Sbjct: 349 RELDPSWSGRHRSSRLNGSPIH 370
>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 529
Score = 26.2 bits (56), Expect = 6.7
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 19/108 (17%)
Query: 5 EGSSLEGRVQDPCPPVRPGALGRNPAE-ERAGRGLGEGFPLDHTECGTGLDTITLVTRMP 63
+G+ E P P P LGR P E+A RG G P +H G G++ + +
Sbjct: 178 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG---PEEHPLQG-GVEPWEPLGQAQ 233
Query: 64 MFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWC--SRMRFLPA 109
F ET LR P AG GS C + ++ LPA
Sbjct: 234 GFENTAET------------LRALSTRPSAGAGSGSSCDPAPLQILPA 269
>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 503
Score = 26.2 bits (56), Expect = 6.7
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 19/108 (17%)
Query: 5 EGSSLEGRVQDPCPPVRPGALGRNPAE-ERAGRGLGEGFPLDHTECGTGLDTITLVTRMP 63
+G+ E P P P LGR P E+A RG G P +H G G++ + +
Sbjct: 152 DGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDG---PEEHPLQG-GVEPWEPLGQAQ 207
Query: 64 MFSLLRETGPAWRTDYRSSRLRHAPRHPVRRAGQGSWC--SRMRFLPA 109
F ET LR P AG GS C + ++ LPA
Sbjct: 208 GFENTAET------------LRALSTRPSAGAGSGSSCDPAPLQILPA 243
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 26.2 bits (56), Expect = 6.7
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 26/87 (29%)
Query: 2 GKLEGSSLEGRVQDPCPPVRPGALGRNPAEERAGRGLGEGFPLDHTECGTGLDTITLVTR 61
GKL+ SSL G + P P PG G P E + L E
Sbjct: 2394 GKLDVSSLSGEERVPAIPKEPGLRGFLP-ENKFNHTLAE--------------------- 2431
Query: 62 MPMFSLLRETGPAWRTDYRSSRLRHAP 88
+LR+TGP R S L AP
Sbjct: 2432 ----PILRDTGPRRRGRRPRSELLKAP 2454
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 25.8 bits (55), Expect = 8.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 8 SLEGRVQDPCPPVRPGALGRNP----AEERAGRGLGEGFP-LDHTECGTG 52
S E V+ P P +RP + G +P +EE A + L P L E G+G
Sbjct: 72 SKEQDVKSPVPSLRPSSTGPSPSGGLSEEPAAKDLDNRMPGLVGQEVGSG 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,343,613
Number of Sequences: 37866
Number of extensions: 302924
Number of successful extensions: 891
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 41
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.