Guide to the Human Genome
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Name: LOC729196 Sequence: fasta or formatted (503aa) NCBI GI: 239744415
Description:

PREDICTED: similar to unc-93 homolog B1 (C. elegans)

Referenced in:

Muscle

Other entries for this name:
alt prot [529aa] PREDICTED: similar to unc-93 homolog B1 (C. elegans)
alt prot [312aa] PREDICTED: similar to unc-93 homolog B1 (C. elegans)
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         55           3
 C cysteine            2.2         11           1
 D aspartate           3.2         16           1
 E glutamate           6.0         30           3
 F phenylalanine       2.2         11           2
 G glycine            12.9         65           3
 H histidine           3.0         15           1
 I isoleucine          3.0         15           1
 K lysine              2.2         11           1
 L leucine             9.3         47           3
 M methionine          1.4          7           1
 N asparagine          1.0          5           2
 P proline            13.1         66           3
 Q glutamine           4.6         23           1
 R arginine            6.2         31           2
 S serine              4.8         24           2
 T threonine           3.8         19           1
 V valine              5.4         27           2
 W tryptophan          2.4         12           2
 Y tyrosine            2.6         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to unc-93 homolog B1 (C. elegans... 
LOC729196             0.995   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
LOC729196             0.353   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
UNC93B1               0.330   unc-93 homolog B1 
LOC100287293          0.307   PREDICTED: hypothetical protein XP_002343924 
TAF4                  0.025   TBP-associated factor 4 
COL3A1                0.023   collagen type III alpha 1 preproprotein 
LMTK3                 0.023   lemur tyrosine kinase 3 
PRB1                  0.022   proline-rich protein BstNI subfamily 1 isoform 1 pre...
NACA                  0.022   nascent polypeptide-associated complex alpha subuni...
SF3B4                 0.021   splicing factor 3b, subunit 4 
DMRTB1                0.021   DMRT-like family B with proline-rich C-terminal, 1 [...
SFPQ                  0.021   splicing factor proline/glutamine rich (polypyrimidin...
PRB3                  0.020   proline-rich protein BstNI subfamily 3 precursor [H...
MYLK3                 0.020   myosin light chain kinase 3 
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.019   SWI/SNF-related matrix-associated actin-dependent re...
UNC93A                0.019   unc-93 homolog A isoform 1 
UNC93A                0.019   unc-93 homolog A isoform 2 
COL1A1                0.019   alpha 1 type I collagen preproprotein 
PDCD7                 0.018   programmed cell death 7 
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform b ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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