Guide to the Human Genome
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Name: LOC100290125 Sequence: fasta or formatted (123aa) NCBI GI: 239750719
Description:

PREDICTED: hypothetical protein XP_002347491

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          8           1
 C cysteine            2.4          3           1
 D aspartate           3.3          4           1
 E glutamate           5.7          7           2
 F phenylalanine       3.3          4           1
 G glycine            12.2         15           1
 H histidine           4.1          5           1
 I isoleucine          0.8          1           1
 K lysine              0.8          1           1
 L leucine            10.6         13           2
 M methionine          3.3          4           1
 N asparagine          0.8          1           1
 P proline            10.6         13           2
 Q glutamine           2.4          3           1
 R arginine           13.0         16           2
 S serine              6.5          8           2
 T threonine           5.7          7           1
 V valine              4.1          5           1
 W tryptophan          3.3          4           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347491 
LOC100293114          1.000   PREDICTED: hypothetical protein 
LOC100288101          0.934   PREDICTED: hypothetical protein XP_002343301 
NES                   0.021   nestin 
LAPTM4B               0.021   lysosomal associated transmembrane protein 4 beta [H...
LOC284801             0.017   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.017   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.017   PREDICTED: hypothetical protein LOC284801 
MYLK3                 0.017   myosin light chain kinase 3 
UAP1L1                0.017   UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 ...
LOC100127891          0.012   PREDICTED: hypothetical protein 
KCP                   0.012   cysteine rich BMP regulator 2 isoform 2 
KCP                   0.012   cysteine rich BMP regulator 2 isoform 1 
LOC100290372          0.012   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.012   PREDICTED: hypothetical protein XP_002342652 
DNM1                  0.008   dynamin 1 isoform 1 
LHX6                  0.008   LIM homeobox protein 6 isoform 2 
LHX6                  0.008   LIM homeobox protein 6 isoform 1 
KALRN                 0.008   kalirin, RhoGEF kinase isoform 1 
KALRN                 0.008   kalirin, RhoGEF kinase isoform 3 
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
LOC729196             0.008   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.008   PREDICTED: hypothetical protein LOC80164 
DNM1                  0.008   dynamin 1 isoform 2 
ILDR1                 0.008   immunoglobulin-like domain containing receptor 1 [Ho...
LOC729196             0.004   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
LOC729196             0.004   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
CHD6                  0.004   chromodomain helicase DNA binding protein 6 
KIAA1671              0.004   hypothetical protein LOC85379 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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