Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239750268
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750268 PREDICTED: hypothetical protein [Homo sapiens]
(1154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750268 PREDICTED: hypothetical protein [Homo sapiens] 2330 0.0
gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo ... 2330 0.0
gi|239755764 PREDICTED: hypothetical protein [Homo sapiens] 2312 0.0
gi|148539835 dystroglycan 1 preproprotein [Homo sapiens] 95 3e-19
gi|239758058 PREDICTED: similar to mucin, partial [Homo sapiens] 45 3e-04
gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 40 0.017
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 40 0.017
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 40 0.017
gi|4504487 histidine rich calcium binding protein precursor [Hom... 40 0.017
gi|19924161 RPB5-mediating protein isoform b [Homo sapiens] 38 0.064
gi|19924159 RPB5-mediating protein isoform a [Homo sapiens] 38 0.064
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 37 0.11
gi|62865614 TAF9 RNA polymerase II, TATA box binding protein-ass... 37 0.11
gi|4507351 TAF9 RNA polymerase II, TATA box binding protein-asso... 37 0.11
gi|41350214 asporin [Homo sapiens] 37 0.11
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 37 0.14
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 37 0.14
gi|239752529 PREDICTED: similar to mucin [Homo sapiens] 36 0.18
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 35 0.41
gi|224493919 zinc finger and SCAN domain containing 18 isoform 2... 34 0.70
gi|224493912 zinc finger and SCAN domain containing 18 isoform 3... 34 0.70
gi|226371704 zinc finger and SCAN domain containing 18 isoform 3... 34 0.70
gi|224493905 zinc finger and SCAN domain containing 18 isoform 1... 34 0.70
gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens] 34 0.92
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 34 0.92
gi|23510384 enhancer of zeste 2 isoform b [Homo sapiens] 33 1.2
gi|21361095 enhancer of zeste 2 isoform a [Homo sapiens] 33 1.2
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 33 1.2
gi|4507161 SRY-box 11 [Homo sapiens] 33 1.6
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 33 2.0
>gi|239750268 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1154
Score = 2330 bits (6038), Expect = 0.0
Identities = 1154/1154 (100%), Positives = 1154/1154 (100%)
Query: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVRFSK 60
MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVRFSK
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVRFSK 60
Query: 61 VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT 120
VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT
Sbjct: 61 VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT 120
Query: 121 THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP 180
THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP
Sbjct: 121 THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP 180
Query: 181 TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA 240
TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA
Sbjct: 181 TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA 240
Query: 241 EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW 300
EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW
Sbjct: 241 EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW 300
Query: 301 NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG 360
NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG
Sbjct: 301 NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG 360
Query: 361 WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC 420
WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC
Sbjct: 361 WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC 420
Query: 421 AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV 480
AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV
Sbjct: 421 AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV 480
Query: 481 TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS 540
TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS
Sbjct: 481 TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS 540
Query: 541 ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH 600
ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH
Sbjct: 541 ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH 600
Query: 601 SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII 660
SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII
Sbjct: 601 SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII 660
Query: 661 PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET 720
PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET
Sbjct: 661 PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET 720
Query: 721 PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG 780
PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG
Sbjct: 721 PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG 780
Query: 781 HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ 840
HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ
Sbjct: 781 HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ 840
Query: 841 YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA 900
YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA
Sbjct: 841 YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA 900
Query: 901 KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD 960
KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD
Sbjct: 901 KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD 960
Query: 961 GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP 1020
GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP
Sbjct: 961 GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP 1020
Query: 1021 ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW 1080
ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW
Sbjct: 1021 ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW 1080
Query: 1081 KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA 1140
KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA
Sbjct: 1081 KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA 1140
Query: 1141 QRSPIARPSLPSPS 1154
QRSPIARPSLPSPS
Sbjct: 1141 QRSPIARPSLPSPS 1154
>gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo
sapiens]
Length = 1154
Score = 2330 bits (6038), Expect = 0.0
Identities = 1154/1154 (100%), Positives = 1154/1154 (100%)
Query: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVRFSK 60
MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVRFSK
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVRFSK 60
Query: 61 VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT 120
VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT
Sbjct: 61 VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT 120
Query: 121 THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP 180
THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP
Sbjct: 121 THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP 180
Query: 181 TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA 240
TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA
Sbjct: 181 TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA 240
Query: 241 EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW 300
EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW
Sbjct: 241 EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW 300
Query: 301 NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG 360
NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG
Sbjct: 301 NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG 360
Query: 361 WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC 420
WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC
Sbjct: 361 WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC 420
Query: 421 AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV 480
AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV
Sbjct: 421 AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV 480
Query: 481 TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS 540
TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS
Sbjct: 481 TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS 540
Query: 541 ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH 600
ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH
Sbjct: 541 ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH 600
Query: 601 SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII 660
SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII
Sbjct: 601 SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII 660
Query: 661 PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET 720
PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET
Sbjct: 661 PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET 720
Query: 721 PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG 780
PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG
Sbjct: 721 PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG 780
Query: 781 HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ 840
HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ
Sbjct: 781 HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ 840
Query: 841 YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA 900
YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA
Sbjct: 841 YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA 900
Query: 901 KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD 960
KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD
Sbjct: 901 KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD 960
Query: 961 GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP 1020
GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP
Sbjct: 961 GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP 1020
Query: 1021 ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW 1080
ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW
Sbjct: 1021 ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW 1080
Query: 1081 KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA 1140
KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA
Sbjct: 1081 KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA 1140
Query: 1141 QRSPIARPSLPSPS 1154
QRSPIARPSLPSPS
Sbjct: 1141 QRSPIARPSLPSPS 1154
>gi|239755764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1149
Score = 2312 bits (5992), Expect = 0.0
Identities = 1149/1154 (99%), Positives = 1149/1154 (99%), Gaps = 5/1154 (0%)
Query: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVRFSK 60
MFSENSICTDLKTTEQVKRKKRYDDDDDDDDD IKVRQKSSWSQKLGVKKCVRFSK
Sbjct: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDD-----IKVRQKSSWSQKLGVKKCVRFSK 55
Query: 61 VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT 120
VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT
Sbjct: 56 VISSYPGRANYTEAMDTGRKSMGADITGTHLPLKWIRRVSAIPYLVLVLTSFFVNMLAVT 115
Query: 121 THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP 180
THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP
Sbjct: 116 THYSCEEIQVHHGVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSP 175
Query: 181 TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA 240
TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA
Sbjct: 176 TKTLQGLPLEDEGGNYQIMVLVSGVLCFQQTQTAFIFTLHVLAGNEVRGSLVPSPNGIRA 235
Query: 241 EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW 300
EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW
Sbjct: 236 EGGSKEFSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLW 295
Query: 301 NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG 360
NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG
Sbjct: 296 NLPVMAEDPRHVITLQGDLVQFHWPMGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEG 355
Query: 361 WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC 420
WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC
Sbjct: 356 WRLLQKSQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC 415
Query: 421 AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV 480
AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV
Sbjct: 416 AALRQITPIPDPNFIPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEV 475
Query: 481 TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS 540
TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS
Sbjct: 476 TPSMVLMATAFTDFDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVS 535
Query: 541 ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH 600
ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH
Sbjct: 536 ESISQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVH 595
Query: 601 SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII 660
SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII
Sbjct: 596 SPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQIHSFII 655
Query: 661 PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET 720
PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET
Sbjct: 656 PTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKET 715
Query: 721 PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG 780
PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG
Sbjct: 716 PSFTQLHDLSELSLSEVSKFSNAFELPENMGSKTMMHILSQPNTFPTVVNSIQLITATVG 775
Query: 781 HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ 840
HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ
Sbjct: 776 HTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESWLQFNMTHQILYGYPLELDFQ 835
Query: 841 YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA 900
YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA
Sbjct: 836 YSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLRTKNSFYSFIKRRERIGLFFA 895
Query: 901 KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD 960
KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD
Sbjct: 896 KLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCLVNSSSLKWCPNKEIQEIMFKLRRPD 955
Query: 961 GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP 1020
GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP
Sbjct: 956 GNVHPNFVYAMLPEYKIGTVENITYSGICLTLELDNGLIGNSILTSSNTENSPWIRNVIP 1015
Query: 1021 ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW 1080
ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW
Sbjct: 1016 ALLATYQTRHAACKILPYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLW 1075
Query: 1081 KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA 1140
KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA
Sbjct: 1076 KRLLAGRGESAHSRECLVPQTGDYAFPDHLLAHRSFPGFLRAGARVRVHTHTRTRARACA 1135
Query: 1141 QRSPIARPSLPSPS 1154
QRSPIARPSLPSPS
Sbjct: 1136 QRSPIARPSLPSPS 1149
>gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]
Length = 895
Score = 95.1 bits (235), Expect = 3e-19
Identities = 72/238 (30%), Positives = 105/238 (44%), Gaps = 17/238 (7%)
Query: 761 QPNTFPTVVNSIQLITATVGHTFHFPIPPDTFYDQEDGNSTHLTLEIKSVNEYPSGPESW 820
+PN P + N I + A VG F IP DTFYD ED + L L +K + G +SW
Sbjct: 492 EPNQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDHEDTTTDKLKLTLKLREQQLVGEKSW 551
Query: 821 LQFNMTHQILYGYPLELDFQYSPQEFILCATDSGGLVAQMPLTIELKLPRSSPCHTYTLR 880
+QFN Q++YG P E+ + ATD GGL A E+ + R R
Sbjct: 552 VQFNSNSQLMYGLP--DSSHVGKHEYFMHATDKGGLSAVD--AFEIHVHRRPQGDRAPAR 607
Query: 881 TKNSFYS-----FIKRRERIGLFFAKLTDYLNSSNPEQIVLITLRPGSTIISWYNRALCL 935
K F ++I L KL N I L + GS ++ W N
Sbjct: 608 FKAKFVGDPALVLNDIHKKIAL-VKKLAFAFGDRNCSTITLQNITRGSIVVEWTN----- 661
Query: 936 VNSSSLKWCPNKEIQEIMFKLRRPDGNVHPNFVYAMLPEYKIGTVENITYSGICLTLE 993
N+ L+ CP ++I + ++ DG P F A+ P++K ++ +T SG C L+
Sbjct: 662 -NTLPLEPCPKEQIAGLSRRIAEDDGKPRPAFSNALEPDFKATSI-TVTGSGSCRHLQ 717
Score = 71.6 bits (174), Expect = 4e-12
Identities = 74/341 (21%), Positives = 146/341 (42%), Gaps = 28/341 (8%)
Query: 133 GVPDTVAIIGKLFSYPISPYAFHGKISQFQVTLVHDVKLPRWLEYHSPTKTLQGLPLEDE 192
G+PD A++G+ F I +V+ LP WL + S + TL+GLPL+ +
Sbjct: 66 GIPDGTAVVGRSFRVTIPTDLIASSGDIIKVSAAGKEALPSWLHWDSQSHTLEGLPLDTD 125
Query: 193 GGNYQIMVLVS--GVLCFQQTQTAFIFTLHVLAGNEVRGSLV----PSPNGIRAEGGSKE 246
G + I V + G QT+ +F++ V + V P P + + + +
Sbjct: 126 KGVHYISVSATRLGANGSHIPQTSSVFSIEVYPEDHSELQSVRTASPDPGEVVSSACAAD 185
Query: 247 FSAIIAEITLKAAAEALGVQERLFLVYTLADYFHLDPSSVTMSPFRSKINKHLWNLPVMA 306
+ + L A + ++R+ L++ + + ++ ++ + P +N L+++
Sbjct: 186 EPVTVLTVILDADLTKMTPKQRIDLLHRMRSFSEVELHNMKLVPV---VNNRLFDMSAFM 242
Query: 307 EDPRHVITLQGDLVQFHWPMGYKVS-TVLPELMQVFQQQASSKYLAQVLGYTIEGWRLLQ 365
P + + + W +G ++ +P++ V + A ++ LGY + GW +
Sbjct: 243 AGPGNAKKVVENGALLSWKLGCSLNQNSVPDIHGV-EAPAREGAMSAQLGYPVVGWHIAN 301
Query: 366 K-----SQTRRPRQLSSIPTSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLC 420
K + RR + P + +GP T + +P S ++PT + + A P ++
Sbjct: 302 KKPPLPKRVRRQIHATPTPVTAIGPP--TTAIQEPPSRIVPTPTSPAI----APPTETMA 355
Query: 421 AALRQITPIP-DPNFIPNTARSLFQKCTKTKRP-QHTAVSQ 459
+R P+P P T ++ Q T T P Q T VS+
Sbjct: 356 PPVRD--PVPGKPTVTIRTRGAIIQ--TPTLGPIQPTRVSE 392
>gi|239758058 PREDICTED: similar to mucin, partial [Homo sapiens]
Length = 967
Score = 45.4 bits (106), Expect = 3e-04
Identities = 104/455 (22%), Positives = 160/455 (35%), Gaps = 85/455 (18%)
Query: 380 TSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLCAALRQITPIPDPNF---IP 436
TS++ TE + F+ T+ TH ++P S A + T P F I
Sbjct: 535 TSSIATTETTSHSPPSFTSSSTTTETH----SHSTPGFSSSIATSKTTSTSPPRFTFAIA 590
Query: 437 NTARSLFQK------CTKTKRPQHTAVSQNSLQEM---------SLTTNLEYSAAFAEVT 481
T +L TK H+ S SL SLT+++ S + T
Sbjct: 591 TTKTTLHSTPRFTLAIASTKTTSHSTPSLTSLITTIETTSHCTPSLTSSITTSGTISHST 650
Query: 482 PSMVLMAT-------AFTDFDFLQGRTSTVSMSVENLDS--PEWELKGHTL------IHG 526
PS + T + T F T T S S + S E+ H+ I
Sbjct: 651 PSFTSLITITESTSHSTTSFPSSITTTETTSHSTPSFTSLIATTEIISHSTPSYTSSIAT 710
Query: 527 TEIQKHTI----LPDLVSESI--SQAGYSQALLSLSKYSHFLKPSVMQDIAMPSEVLSSM 580
TE H+ +E+I S + A+ + SH + S + +S
Sbjct: 711 TETPSHSTPSFPFSITTTETIPHSTPSLNSAITTTETMSHSIP-------GFASSITTSE 763
Query: 581 TT--FLSKWSGSVPVDWEKSVHSPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQH 638
TT F +++ + S HSP S TAS T A SH PL F+ V+ S +++ Q
Sbjct: 764 TTSPFPPRFTSLITTTKTTS-HSPPSF---TASLTSTEATSHSPLSFTSVIASTKITSQ- 818
Query: 639 LHEHNHTSDTPEVSQQIHSFIIPTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISKL 698
TP + T +I+ G S + +S+ D+T + + L
Sbjct: 819 --------STPSL----------TSLITTTGTSSHNTLGLSSSVDTTKTTSHSTASFTSL 860
Query: 699 VDEGSLCDGDV------IIKTQSYSKETPSFTQLHDLSELSLSEVSKFSNAFELPENMGS 752
+ + I T+ S TPSFT E + F++ + +
Sbjct: 861 IATTETTSHNTPGFTSSIATTEITSHSTPSFTSSITTMETTSRSSPSFTSLITITGSTSH 920
Query: 753 KTMMHILSQPNTFPTVVNSIQLITA---TVGHTFH 784
T S T T +S IT+ T TFH
Sbjct: 921 ST-ASFTSSITTTETTSHSTPSITSSVTTAERTFH 954
Score = 42.4 bits (98), Expect = 0.003
Identities = 81/392 (20%), Positives = 148/392 (37%), Gaps = 37/392 (9%)
Query: 380 TSTMGPTELITKLSKPFSVLLPTSVTHWMPKDEASPIPSLCAALRQITP-----IPDPNF 434
TS++ TE+ + + F+ + T+ T + + ++ + T I
Sbjct: 90 TSSIATTEITSHSTPSFTSSITTTETTSQSSPSFTSLITITGSTSHSTASFTSSITTTET 149
Query: 435 IPNTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEVTPSMV-LMATAFTD 493
++ RS+ T TKR H++ +S T+++ S + PS L+ T +
Sbjct: 150 TSHSTRSITSSITTTKRTSHSS--------LSYTSSIATSETPSHTVPSFTSLITTTEST 201
Query: 494 FDFLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQK---HTILPDLVSESISQAGYSQ 550
TS ++ + SP T I T +++ + S+S ++
Sbjct: 202 SHSNPSLTSAITTTETRSHSPPIFTSSITTIETTSHSTPSFTSLMTTTETTSLSPPAFTF 261
Query: 551 ALLSLSKYSHFLKPSVMQDIA---MPSEVLSSMTTFLSKWSG---------SVPVDWEKS 598
++ + SH PS IA PS S T+ ++ SV E +
Sbjct: 262 SISTTETNSH-SPPSFTSSIATTETPSHSPPSFTSLITTTESTSHSPLSFTSVITTTEST 320
Query: 599 VHSPDSLLTPTASARETLAASHFPLEFSQVLLSNQL-SQQHLHEHNHTSDTPEVSQQIHS 657
HS S T+S T SH P F+ ++ + + S + + + T S S
Sbjct: 321 SHSTPSF---TSSIATTETTSHTPPSFTSLITTTETPSHSNPSFTSLITATESTSHSPPS 377
Query: 658 F--IIPTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFIS-KLVDEGSLCDGDVIIKTQ 714
F I T I++ I T + + S S P T S + + + +I T+
Sbjct: 378 FTSAIATTGITSHSTPIFTSLIATTDSTSHSTPSFTSSITSTETISHSTPSFSSLITATK 437
Query: 715 SYSKETPSFTQLHDLSELSLSEVSKFSNAFEL 746
+ S TPS T L ++ + S F++ +L
Sbjct: 438 TTSHSTPSLTSLITTTKSTPHNASSFTSYSQL 469
Score = 34.3 bits (77), Expect = 0.70
Identities = 87/376 (23%), Positives = 132/376 (35%), Gaps = 59/376 (15%)
Query: 380 TSTMGPTELITKLSKP---FSVLLPTSVTHWMPKDEASPIPSLCAALRQITPIPDPNFIP 436
TS M TE T LS P FS+ + +H P +S I P+ P
Sbjct: 243 TSLMTTTET-TSLSPPAFTFSISTTETNSHSPPSFTSS-----------IATTETPSHSP 290
Query: 437 NTARSLFQKCTKTKRPQHTAVSQNSLQEMSLTTNLEYSAAFAEVTPSMVLM-ATAFTDFD 495
+ SL T T+ H+ +S S+ +TT S + T S+ T+ T
Sbjct: 291 PSFTSLI---TTTESTSHSPLSFTSV----ITTTESTSHSTPSFTSSIATTETTSHTPPS 343
Query: 496 FLQGRTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVSESISQAGYSQ----- 550
F T+T + S N P + +LI TE H+ P + +I+ G +
Sbjct: 344 FTSLITTTETPSHSN---PSFT----SLITATESTSHS--PPSFTSAIATTGITSHSTPI 394
Query: 551 --ALLSLSKYSHFLKPSVMQDIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVHSPDSLLTP 608
+L++ + + PS I + S +F S + + S S SL+T
Sbjct: 395 FTSLIATTDSTSHSTPSFTSSITSTETISHSTPSFSSLITATKTTS--HSTPSLTSLITT 452
Query: 609 TASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQ-QIHSFIIPTEIISA 667
T S AS F SQ H +H+H P+ SQ +
Sbjct: 453 TKSTPHN--ASSF----------TSYSQLHFFDHHHRGHIPQYSQLDFFDHYNRDHLTQF 500
Query: 668 PGMSINTKFVWNSTSDSTLLPMETDCFISKLVDEGSLCDGDVIIKTQSYSKETPSFTQLH 727
+ TK +S T L T K + I T++ S PSFT
Sbjct: 501 TSLITTTKTTSHSPPSFTALITST-----KTTSHSTPSFTSSIATTETTSHSPPSFTSSS 555
Query: 728 DLSELSLSEVSKFSNA 743
+E FS++
Sbjct: 556 TTTETHSHSTPGFSSS 571
>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 39.7 bits (91), Expect = 0.017
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 16 QVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCV 56
Q K K D+DDDDDDDDDDDD + +K+ VKK +
Sbjct: 149 QKKVKLAVDEDDDDDDDDDDDDFDDEEA---EEKVPVKKSI 186
>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 39.7 bits (91), Expect = 0.017
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 16 QVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCV 56
Q K K D+DDDDDDDDDDDD + +K+ VKK +
Sbjct: 149 QKKVKLAVDEDDDDDDDDDDDDFDDEEA---EEKVPVKKSI 186
>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 39.7 bits (91), Expect = 0.017
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 16 QVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCV 56
Q K K D+DDDDDDDDDDDD + +K+ VKK +
Sbjct: 149 QKKVKLAVDEDDDDDDDDDDDDFDDEEA---EEKVPVKKSI 186
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 39.7 bits (91), Expect = 0.017
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 24 DDDDDDDDDDDDDDIKVRQK 43
DDDDDDDDDDDDDD+ + +
Sbjct: 248 DDDDDDDDDDDDDDVSIEYR 267
Score = 37.7 bits (86), Expect = 0.064
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 24 DDDDDDDDDDDDDD----IKVRQKSSWSQKLGVKK 54
DDDDDDDDDDDDDD I+ R ++ Q G+++
Sbjct: 246 DDDDDDDDDDDDDDDDVSIEYRHQAHRHQGHGIEE 280
Score = 35.8 bits (81), Expect = 0.24
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 19 RKKRYDDDDDDDDDDDDDD 37
R + +++DDDDDDDDDDDD
Sbjct: 239 RHQGHEEDDDDDDDDDDDD 257
>gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
Length = 495
Score = 37.7 bits (86), Expect = 0.064
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 24 DDDDDDDDDDDDDDIKVRQKSSWSQKLGV 52
DDDDDDDDDDDDD+I + + LGV
Sbjct: 259 DDDDDDDDDDDDDNIDDDDGDNDHEALGV 287
Score = 35.4 bits (80), Expect = 0.32
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 23 YDDDDDDDDDDDDDD 37
+ DDDDDDDDDDDDD
Sbjct: 257 HSDDDDDDDDDDDDD 271
Score = 35.0 bits (79), Expect = 0.41
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 17 VKRKKRYDDDDDDDDDDDDDD 37
V Y DDDDDDDDDDDD
Sbjct: 250 VNGSSSYHSDDDDDDDDDDDD 270
>gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]
Length = 535
Score = 37.7 bits (86), Expect = 0.064
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 24 DDDDDDDDDDDDDDIKVRQKSSWSQKLGV 52
DDDDDDDDDDDDD+I + + LGV
Sbjct: 299 DDDDDDDDDDDDDNIDDDDGDNDHEALGV 327
Score = 35.4 bits (80), Expect = 0.32
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 23 YDDDDDDDDDDDDDD 37
+ DDDDDDDDDDDDD
Sbjct: 297 HSDDDDDDDDDDDDD 311
Score = 35.0 bits (79), Expect = 0.41
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 17 VKRKKRYDDDDDDDDDDDDDD 37
V Y DDDDDDDDDDDD
Sbjct: 290 VNGSSSYHSDDDDDDDDDDDD 310
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 37.0 bits (84), Expect = 0.11
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDDDDDDDD
Sbjct: 264 DDDDDDDDDDDDDD 277
Score = 35.4 bits (80), Expect = 0.32
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DD+DDDDDDDDDDD
Sbjct: 261 DDEDDDDDDDDDDD 274
Score = 35.4 bits (80), Expect = 0.32
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
D+DDDDDDDDDDDD
Sbjct: 262 DEDDDDDDDDDDDD 275
Score = 35.4 bits (80), Expect = 0.32
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
+DDDDDDDDDDDDD
Sbjct: 263 EDDDDDDDDDDDDD 276
Score = 35.4 bits (80), Expect = 0.32
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDDDDDDD+
Sbjct: 265 DDDDDDDDDDDDDE 278
Score = 35.4 bits (80), Expect = 0.32
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDDDDDD+D
Sbjct: 266 DDDDDDDDDDDDED 279
Score = 35.4 bits (80), Expect = 0.32
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDDDDD+DD
Sbjct: 267 DDDDDDDDDDDEDD 280
Score = 34.7 bits (78), Expect = 0.54
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 4 ENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDD 37
E S+ + + +Q D+DD+DDDDDDDDD
Sbjct: 239 EGSVESSEEGEDQEHEDDGEDEDDEDDDDDDDDD 272
Score = 33.9 bits (76), Expect = 0.92
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
+DD+DDDDDDDDDD
Sbjct: 260 EDDEDDDDDDDDDD 273
Score = 33.9 bits (76), Expect = 0.92
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDDDD+DD+
Sbjct: 268 DDDDDDDDDDEDDE 281
Score = 33.9 bits (76), Expect = 0.92
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDDD+DD+D
Sbjct: 269 DDDDDDDDDEDDED 282
Score = 32.3 bits (72), Expect = 2.7
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDD+DD+D+
Sbjct: 270 DDDDDDDDEDDEDE 283
Score = 30.8 bits (68), Expect = 7.8
Identities = 10/14 (71%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDD+DD+D++
Sbjct: 271 DDDDDDDEDDEDEE 284
Score = 30.8 bits (68), Expect = 7.8
Identities = 10/14 (71%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDD+DD+D++D
Sbjct: 272 DDDDDDEDDEDEED 285
>gi|62865614 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
Length = 264
Score = 37.0 bits (84), Expect = 0.11
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 19 RKKRYDDDDDDDDDDDDDDI 38
++KR DDDDDDDDDDD D++
Sbjct: 245 KRKREDDDDDDDDDDDYDNL 264
Score = 36.2 bits (82), Expect = 0.18
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDD 36
M S+N T +++ +KRK+ DDDDDDDDDD D+
Sbjct: 231 MSSQN---TANESSNALKRKREDDDDDDDDDDDYDN 263
Score = 34.7 bits (78), Expect = 0.54
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDD 36
+ + N + + E KR +DDDDDDDDDDD
Sbjct: 225 LITTNMMSSQNTANESSNALKRKREDDDDDDDDDDD 260
>gi|4507351 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
Length = 264
Score = 37.0 bits (84), Expect = 0.11
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 19 RKKRYDDDDDDDDDDDDDDI 38
++KR DDDDDDDDDDD D++
Sbjct: 245 KRKREDDDDDDDDDDDYDNL 264
Score = 36.2 bits (82), Expect = 0.18
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDD 36
M S+N T +++ +KRK+ DDDDDDDDDD D+
Sbjct: 231 MSSQN---TANESSNALKRKREDDDDDDDDDDDYDN 263
Score = 34.7 bits (78), Expect = 0.54
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 1 MFSENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDD 36
+ + N + + E KR +DDDDDDDDDDD
Sbjct: 225 LITTNMMSSQNTANESSNALKRKREDDDDDDDDDDD 260
>gi|41350214 asporin [Homo sapiens]
Length = 380
Score = 37.0 bits (84), Expect = 0.11
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDDDDDDDD
Sbjct: 38 DDDDDDDDDDDDDD 51
Score = 36.2 bits (82), Expect = 0.18
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 7/34 (20%)
Query: 4 ENSICTDLKTTEQVKRKKRYDDDDDDDDDDDDDD 37
+N + D++ T+ DDDDDDDDDDDD+D
Sbjct: 27 KNMMLKDMEDTDD-------DDDDDDDDDDDDED 53
Score = 33.5 bits (75), Expect = 1.2
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DDDDDDDDDDD+D+
Sbjct: 41 DDDDDDDDDDDEDN 54
Score = 32.0 bits (71), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 24 DDDDDDDDDDDDDDI 38
DDDDDDDDDD+D+ +
Sbjct: 42 DDDDDDDDDDEDNSL 56
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 36.6 bits (83), Expect = 0.14
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 24 DDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVR 57
DDDDD++DDD+DDD +K VKK +R
Sbjct: 164 DDDDDEEDDDEDDDDDDFDDEEAEEKAPVKKSIR 197
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 36.6 bits (83), Expect = 0.14
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 24 DDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCVR 57
DDDDD++DDD+DDD +K VKK +R
Sbjct: 164 DDDDDEEDDDEDDDDDDFDDEEAEEKAPVKKSIR 197
>gi|239752529 PREDICTED: similar to mucin [Homo sapiens]
Length = 594
Score = 36.2 bits (82), Expect = 0.18
Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 11/190 (5%)
Query: 596 EKSVHSPDSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPEVSQQ- 654
E HSP S T+ T + SH PL F+ V+ + + + + T E +
Sbjct: 113 ETPSHSPPSF---TSLITTTESTSHSPLSFTSVITTTESTSHSTPSFTSSIATTETTSHT 169
Query: 655 ---IHSFIIPTEIISAPGMSINTKFVWNSTSDSTLLPMETDCFISK-LVDEGSLCDGDVI 710
S I TE S S T + + S S P T + + + +I
Sbjct: 170 PPSFTSLITTTETPSHSNPSF-TSLITATESTSHSPPSFTSAIATTGITSHSTPIFTSLI 228
Query: 711 IKTQSYSKETPSFTQLHDLSELSLSEVSKFSNAFELPENMGSKT--MMHILSQPNTFPTV 768
T S S TPSFT +E FS+ + T + +++ NT +
Sbjct: 229 ATTDSTSHSTPSFTSSITSTETISHSTPSFSSLITATKTTSHSTPSLTSLITTTNTSHST 288
Query: 769 VNSIQLITAT 778
+ L+T+T
Sbjct: 289 PSLTSLVTST 298
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 35.0 bits (79), Expect = 0.41
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 24 DDDDDDDDDDDDDDIKVRQKSS 45
DDD+DDD+DDDD+D++ + S
Sbjct: 1701 DDDEDDDEDDDDEDLRTDSEES 1722
Score = 34.3 bits (77), Expect = 0.70
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 24 DDDDDDDDDDDDDDIKVRQKSSWS 47
+DDDD+DDD+DDDD +R S S
Sbjct: 1699 EDDDDEDDDEDDDDEDLRTDSEES 1722
Score = 33.1 bits (74), Expect = 1.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 15 EQVKRKKRYDDDDDDDDDDDDDD 37
E+ + + DDD+DDDD+DDD+D
Sbjct: 1687 EEAEDDEDEDDDEDDDDEDDDED 1709
Score = 32.3 bits (72), Expect = 2.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 10 DLKTTEQVKRKKRYDDDDDDDDDDDDDD 37
+L+ E+ +DDD+DDDD+DDD+
Sbjct: 1681 ELELPEEEAEDDEDEDDDEDDDDEDDDE 1708
Score = 32.3 bits (72), Expect = 2.7
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
DD+DDDD+DDD+DD
Sbjct: 1697 DDEDDDDEDDDEDD 1710
Score = 32.3 bits (72), Expect = 2.7
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 24 DDDDDDDDDDDDDD 37
D+DDDD+DDD+DDD
Sbjct: 1698 DEDDDDEDDDEDDD 1711
>gi|224493919 zinc finger and SCAN domain containing 18 isoform 2
[Homo sapiens]
Length = 374
Score = 34.3 bits (77), Expect = 0.70
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 544 SQAGYSQALLSLSKYSHFLKPSVMQ-DIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVHSP 602
S AG S ++LS Y + P ++ ++A PS+ L + G +P E SP
Sbjct: 5 SPAG-SSSILSDGVYERHMDPLLLPGELASPSQALGA---------GEIPAPSETPWLSP 54
Query: 603 DSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPE 650
D L RE P Q L S QHL E H E
Sbjct: 55 DPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQHLGEWGHLDPAEE 102
>gi|224493912 zinc finger and SCAN domain containing 18 isoform 3
[Homo sapiens]
Length = 510
Score = 34.3 bits (77), Expect = 0.70
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 544 SQAGYSQALLSLSKYSHFLKPSVMQ-DIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVHSP 602
S AG S ++LS Y + P ++ ++A PS+ L + G +P E SP
Sbjct: 140 SPAG-SSSILSDGVYERHMDPLLLPGELASPSQALGA---------GEIPAPSETPWLSP 189
Query: 603 DSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPE 650
D L RE P Q L S QHL E H E
Sbjct: 190 DPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQHLGEWGHLDPAEE 237
>gi|226371704 zinc finger and SCAN domain containing 18 isoform 3
[Homo sapiens]
Length = 510
Score = 34.3 bits (77), Expect = 0.70
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 544 SQAGYSQALLSLSKYSHFLKPSVMQ-DIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVHSP 602
S AG S ++LS Y + P ++ ++A PS+ L + G +P E SP
Sbjct: 140 SPAG-SSSILSDGVYERHMDPLLLPGELASPSQALGA---------GEIPAPSETPWLSP 189
Query: 603 DSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPE 650
D L RE P Q L S QHL E H E
Sbjct: 190 DPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQHLGEWGHLDPAEE 237
>gi|224493905 zinc finger and SCAN domain containing 18 isoform 1
[Homo sapiens]
Length = 566
Score = 34.3 bits (77), Expect = 0.70
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 544 SQAGYSQALLSLSKYSHFLKPSVMQ-DIAMPSEVLSSMTTFLSKWSGSVPVDWEKSVHSP 602
S AG S ++LS Y + P ++ ++A PS+ L + G +P E SP
Sbjct: 196 SPAG-SSSILSDGVYERHMDPLLLPGELASPSQALGA---------GEIPAPSETPWLSP 245
Query: 603 DSLLTPTASARETLAASHFPLEFSQVLLSNQLSQQHLHEHNHTSDTPE 650
D L RE P Q L S QHL E H E
Sbjct: 246 DPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQHLGEWGHLDPAEE 293
>gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]
Length = 265
Score = 33.9 bits (76), Expect = 0.92
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 24 DDDDDDDDDDDDDDIKVRQKSSWSQKLGVKK 54
DDDDD++DDD+DDD +K VKK
Sbjct: 164 DDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK 194
Score = 33.5 bits (75), Expect = 1.2
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 15 EQVKRKKRYDDDDDDDDDDDDDD 37
++VK DDDDDD++DDD+DD
Sbjct: 154 KKVKLAADEDDDDDDEEDDDEDD 176
Score = 32.7 bits (73), Expect = 2.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 16 QVKRKKRYDDDDDDDDDDDDDD 37
Q K K D+DDDDDD++DDD+
Sbjct: 153 QKKVKLAADEDDDDDDEEDDDE 174
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 33.9 bits (76), Expect = 0.92
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 1037 PYKGSDPQQTLFYEIQKKSSFCSLTFVPGPAVKTNRGYGPQPLWKRLLAGRGESAHSREC 1096
P S+P L + ++ + C G A + +R G P +RL G +R
Sbjct: 74 PEAASEPPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERL-RGSDPVLRARAL 132
Query: 1097 LVPQTGDYAFPDHLLAHRSFP----GFLR-AGARVRVHTHTRTRARA 1138
+ Q G+YA LL R FP FL+ R R H R R RA
Sbjct: 133 VAFQRGEYAELYRLLESRPFPAAHHAFLQDLYLRARYHEAERARGRA 179
>gi|23510384 enhancer of zeste 2 isoform b [Homo sapiens]
Length = 707
Score = 33.5 bits (75), Expect = 1.2
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 15 EQVKRKKRYDDDDDDDDDDDDDDIKVRQK 43
E V +Y+DDDDDDD DD ++ + +QK
Sbjct: 134 ELVNALGQYNDDDDDDDGDDPEEREEKQK 162
>gi|21361095 enhancer of zeste 2 isoform a [Homo sapiens]
Length = 751
Score = 33.5 bits (75), Expect = 1.2
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 15 EQVKRKKRYDDDDDDDDDDDDDDIKVRQK 43
E V +Y+DDDDDDD DD ++ + +QK
Sbjct: 173 ELVNALGQYNDDDDDDDGDDPEEREEKQK 201
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 33.5 bits (75), Expect = 1.2
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 6/32 (18%)
Query: 12 KTTEQVKRKKRYDDD------DDDDDDDDDDD 37
K E VK+K R ++D DDDDDDDD++D
Sbjct: 213 KHQESVKKKGREEEDMEEEENDDDDDDDDEED 244
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 33.1 bits (74), Expect = 1.6
Identities = 11/20 (55%), Positives = 18/20 (90%)
Query: 24 DDDDDDDDDDDDDDIKVRQK 43
D+DDDDDDDDD+ ++++Q+
Sbjct: 223 DEDDDDDDDDDELQLQIKQE 242
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 32.7 bits (73), Expect = 2.0
Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 10/185 (5%)
Query: 441 SLFQKCTKTKRPQHTAVSQNSL-QEMSLTTNLEYSAAFAEVTPSMVLMATAFTDFDFLQG 499
SLF+K TK HT+ S +SL + +S + +L S S + D +L
Sbjct: 1093 SLFRKITKQSNLLHTSRSLSSLNRSLSSSDSLPGSPTHGLPARSPTHSYRSTPDSAYLGA 1152
Query: 500 RTSTVSMSVENLDSPEWELKGHTLIHGTEIQKHTILPDLVSESISQAGYSQALLSLSKYS 559
+ + S + +SP H I + + H + P L + S S + LS +
Sbjct: 1153 SSQSSSPASSTPNSPASSASHH--IRPSTL--HGLSPKLHRQYRSARCKSAGNIPLSPLA 1208
Query: 560 HFLKPSVMQDIAMPSEVLSSMTT---FLSKWSGSVPV--DWEKSVHSPDSLLTPTASARE 614
H P+ +P + S T F +K S PV KS P S L + E
Sbjct: 1209 HTPSPTQASPPPLPGHTVGSSHTTQSFPAKLHSSPPVVRPRPKSAEPPRSPLLKRVQSAE 1268
Query: 615 TLAAS 619
L AS
Sbjct: 1269 KLGAS 1273
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,235,178
Number of Sequences: 37866
Number of extensions: 2067324
Number of successful extensions: 9812
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 8925
Number of HSP's gapped (non-prelim): 457
length of query: 1154
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1041
effective length of database: 13,968,660
effective search space: 14541375060
effective search space used: 14541375060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.