Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZSCAN18 Sequence: fasta or formatted (374aa) NCBI GI: 224493919
Description:

zinc finger and SCAN domain containing 18 isoform 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [566aa] zinc finger and SCAN domain containing 18 isoform 1
alt prot [510aa] zinc finger and SCAN domain containing 18 isoform 3
alt prot [510aa] zinc finger and SCAN domain containing 18 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         41           2
 C cysteine            1.6          6           1
 D aspartate           5.3         20           1
 E glutamate          11.2         42           5
 F phenylalanine       1.3          5           1
 G glycine            11.5         43           2
 H histidine           2.9         11           2
 I isoleucine          0.8          3           1
 K lysine              3.7         14           1
 L leucine             9.4         35           3
 M methionine          0.8          3           1
 N asparagine          0.5          2           1
 P proline            11.2         42           2
 Q glutamine           5.9         22           2
 R arginine            5.3         20           2
 S serine              9.1         34           3
 T threonine           3.5         13           2
 V valine              1.9          7           1
 W tryptophan          1.3          5           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger and SCAN domain containing 18 isoform 2... 
ZSCAN18               0.993   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.993   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.993   zinc finger and SCAN domain containing 18 isoform 1...
ZNF3                  0.079   zinc finger protein 3 isoform 2 
ZNF205                0.077   zinc finger protein 205 
ZNF205                0.077   zinc finger protein 205 
ZNF696                0.073   zinc finger protein 696 
ZNF79                 0.071   zinc finger protein 79 
ZFP92                 0.069   zinc finger protein 92 homolog 
ZNF543                0.069   zinc finger protein 543 
ZNF282                0.068   zinc finger protein 282 
ZNF48                 0.065   zinc finger protein 48 
ZNF790                0.065   zinc finger protein 790 
ZNF572                0.064   zinc finger protein 572 
ZNF568                0.064   zinc finger protein 568 
ZNF835                0.064   zinc finger protein 835 
LOC647678             0.063   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.063   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.063   PREDICTED: hypothetical protein XP_002343697 
ZNF436                0.063   zinc finger protein 436 
ZNF556                0.063   zinc finger protein 556 
ZNF436                0.063   zinc finger protein 436 
LOC169834             0.063   hypothetical protein LOC169834 
ZNF71                 0.063   zinc finger protein 71 
ZNF389                0.063   zinc finger protein 389 
ZNF837                0.061   zinc finger protein 837 isoform 1 
ZNF837                0.061   zinc finger protein 837 isoform 2 
ZNF208                0.061   zinc finger protein 208 
ZNF180                0.061   zinc finger protein 180 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press