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Search of human proteins with 239750123
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo
sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo ... 400 e-112
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 40 0.002
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 38 0.005
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 38 0.005
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 38 0.005
gi|112421108 capicua homolog [Homo sapiens] 38 0.006
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 37 0.011
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 37 0.011
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 37 0.014
gi|38683851 round spermatid basic protein 1 [Homo sapiens] 37 0.014
gi|239754599 PREDICTED: hypothetical protein [Homo sapiens] 36 0.018
gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] 36 0.023
gi|188497630 hypothetical protein LOC55571 [Homo sapiens] 36 0.023
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|5453810 netrin 3 [Homo sapiens] 35 0.031
gi|22902136 osterix [Homo sapiens] 34 0.068
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 34 0.068
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 34 0.068
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 34 0.068
gi|6912372 forkhead box D3 [Homo sapiens] 34 0.068
gi|50878302 Fc receptor-like B [Homo sapiens] 34 0.068
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 34 0.089
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 34 0.089
gi|169167822 PREDICTED: similar to hCG17429 [Homo sapiens] 33 0.12
gi|169167904 PREDICTED: similar to hCG17429 [Homo sapiens] 33 0.12
gi|239742531 PREDICTED: similar to hCG17429 [Homo sapiens] 33 0.12
>gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo
sapiens]
Length = 194
Score = 400 bits (1027), Expect = e-112
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MARSPWFSIENGWETKHLMVILCAHRAAGRTRQCVRLCLSAGGGRVGRAGRAWTVNPKAR 60
MARSPWFSIENGWETKHLMVILCAHRAAGRTRQCVRLCLSAGGGRVGRAGRAWTVNPKAR
Sbjct: 1 MARSPWFSIENGWETKHLMVILCAHRAAGRTRQCVRLCLSAGGGRVGRAGRAWTVNPKAR 60
Query: 61 AAGLRSGAPRRRRRGLSLGGGARGGACGAGPGLPAPTWVRRPWSSRLSAGTAPPRVLSMT 120
AAGLRSGAPRRRRRGLSLGGGARGGACGAGPGLPAPTWVRRPWSSRLSAGTAPPRVLSMT
Sbjct: 61 AAGLRSGAPRRRRRGLSLGGGARGGACGAGPGLPAPTWVRRPWSSRLSAGTAPPRVLSMT 120
Query: 121 FSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPPTSVRMARLTARNKSCPVTHLLPS 180
FSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPPTSVRMARLTARNKSCPVTHLLPS
Sbjct: 121 FSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPPTSVRMARLTARNKSCPVTHLLPS 180
Query: 181 QPGRFLTASSGAVS 194
QPGRFLTASSGAVS
Sbjct: 181 QPGRFLTASSGAVS 194
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 39.7 bits (91), Expect = 0.002
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 30 RTRQCVRLCLSAGGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARG-GACG 88
R+ + L A R A W + P+AR G G+ R RRRG S GA G G
Sbjct: 367 RSPEAPHYLLWAAAVRGQEAHSLWPLQPRARRQG---GSDRHRRRGQS---GASGLGTAA 420
Query: 89 AGPGLPAPTWVRRPWSSRLSAGTAP 113
AG +P R P +RL TAP
Sbjct: 421 AGAERTSPVGARPPPPARLVTNTAP 445
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 39.7 bits (91), Expect = 0.002
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 30 RTRQCVRLCLSAGGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARG-GACG 88
R+ + L A R A W + P+AR G G+ R RRRG S GA G G
Sbjct: 457 RSPEAPHYLLWAAAVRGQEAHSLWPLQPRARRQG---GSDRHRRRGQS---GASGLGTAA 510
Query: 89 AGPGLPAPTWVRRPWSSRLSAGTAP 113
AG +P R P +RL TAP
Sbjct: 511 AGAERTSPVGARPPPPARLVTNTAP 535
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 39.7 bits (91), Expect = 0.002
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 30 RTRQCVRLCLSAGGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARG-GACG 88
R+ + L A R A W + P+AR G G+ R RRRG S GA G G
Sbjct: 457 RSPEAPHYLLWAAAVRGQEAHSLWPLQPRARRQG---GSDRHRRRGQS---GASGLGTAA 510
Query: 89 AGPGLPAPTWVRRPWSSRLSAGTAP 113
AG +P R P +RL TAP
Sbjct: 511 AGAERTSPVGARPPPPARLVTNTAP 535
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 88 GAGPGLPAPTWVRRP---------WSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFP 138
G G G PAPT P + LS+G PP ++ S+P P+ P
Sbjct: 727 GPGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPP 786
Query: 139 EMVTPLPLPASASHSLGPPTSVRMARLTARN 169
++ +PLPA +S + P ++ TA++
Sbjct: 787 PLLPTVPLPAPSSSASPHPCPSPLSNATAQS 817
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 88 GAGPGLPAPTWVRRP---------WSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFP 138
G G G PAPT P + LS+G PP ++ S+P P+ P
Sbjct: 928 GPGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPP 987
Query: 139 EMVTPLPLPASASHSLGPPTSVRMARLTARN 169
++ +PLPA +S + P ++ TA++
Sbjct: 988 PLLPTVPLPAPSSSASPHPCPSPLSNATAQS 1018
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 88 GAGPGLPAPTWVRRP---------WSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFP 138
G G G PAPT P + LS+G PP ++ S+P P+ P
Sbjct: 928 GPGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPP 987
Query: 139 EMVTPLPLPASASHSLGPPTSVRMARLTARN 169
++ +PLPA +S + P ++ TA++
Sbjct: 988 PLLPTVPLPAPSSSASPHPCPSPLSNATAQS 1018
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 37.7 bits (86), Expect = 0.006
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 79 GGGARGGA---CGAGPGLPAPTWVRRPWSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTP 135
GGG G+ G+GP P P + +P + + G + + T + V P A P
Sbjct: 787 GGGTTAGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAPAPAPAP 846
Query: 136 SFPEMVTPLPLPASASHSLGPP---TSVRMARLTARNKSCPVTHLLPSQP 182
P P ++ PP T+ ++ TA P+ +PS P
Sbjct: 847 GTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAP 896
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 37.0 bits (84), Expect = 0.011
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 65 RSGAPRRRRRGLSLGGGARGGACGAGPGLPAPTWVRRPWSSRLSAGTAPPRVLSMTFSTP 124
++G P R GL + RG A P PA +++ RP+ S G L + FS P
Sbjct: 814 QTGPPPSYRPGLRMFPETRGTTGCAQP--PAVSFLPRPFPSDPYGGRGSSFSLGLPFSPP 871
Query: 125 VSVR--PITAFTP---SFPEMVTPLPLPASASHSLGP 156
R P+ A P FP PLPA + +GP
Sbjct: 872 APFRPPPLPASPPLEGPFPSQSDVHPLPAEGYNKVGP 908
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 37.0 bits (84), Expect = 0.011
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 65 RSGAPRRRRRGLSLGGGARGGACGAGPGLPAPTWVRRPWSSRLSAGTAPPRVLSMTFSTP 124
++G P R GL + RG A P PA +++ RP+ S G L + FS P
Sbjct: 751 QTGPPPSYRPGLRMFPETRGTTGCAQP--PAVSFLPRPFPSDPYGGRGSSFSLGLPFSPP 808
Query: 125 VSVR--PITAFTP---SFPEMVTPLPLPASASHSLGP 156
R P+ A P FP PLPA + +GP
Sbjct: 809 APFRPPPLPASPPLEGPFPSQSDVHPLPAEGYNKVGP 845
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 36.6 bits (83), Expect = 0.014
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 91 PGLPAPTWVRRPWSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFPEMVTPLP--LPA 148
P PAP V P + S + P ++ TPV P P F TP+P PA
Sbjct: 347 PAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPV---PAPTPAPIFTPAPTPMPAATPA 403
Query: 149 SASHSLGPPTSVRMARLTARNKSCPVTHLLP--SQPGRFLTASSGAV 193
+ S P S ++R+ P +P QPG LT S V
Sbjct: 404 AIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPSQPLV 450
Score = 28.9 bits (63), Expect = 2.9
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 96 PTWVRRPWSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLG 155
PT P S LS P P+S +P T TPS P + P P S G
Sbjct: 406 PTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPSQPLVYIPPP-------SCG 458
Query: 156 PPTSVRMARLTARNKSCPVTHLLPS 180
P SV T S +LPS
Sbjct: 459 QPLSVATLPTTLGVSSTLTLPVLPS 483
>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
Length = 802
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/153 (28%), Positives = 58/153 (37%), Gaps = 15/153 (9%)
Query: 23 CAHRAAGRTRQCV---RLCLSAGGGRVGRAGRAWTVNPKARA----AGLRSGAPRRRRRG 75
CA A +CV + G RV RA A K AG+ +R+RR
Sbjct: 32 CADGGAVGPFKCVFVGEMAAQVGAVRVVRAVAAQEEPDKEGKEKPHAGVSPRGVKRQRRS 91
Query: 76 LSLGGGARGGACGAGPGLPAPTWVRRPWSSRLSAGTAPPRVLSMTFSTPVSVR-----PI 130
S G + G P L P RR SR G PP + T PV P
Sbjct: 92 SSGGSQEKRGRPSQEPPLAPPHRRRR---SRQHPGPLPPTNAAPTVPGPVEPLLLPPPPP 148
Query: 131 TAFTPSFPEMVTPLPLPASASHSLGPPTSVRMA 163
+ P+ P + PLP P++++ P +V A
Sbjct: 149 PSLAPAGPAVAAPLPAPSTSALFTFSPLTVSAA 181
>gi|239754599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 36.2 bits (82), Expect = 0.018
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 42 GGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRG--LSLGGGARGGACGAGPGLPAPTWV 99
GGG+ R + KA A R G ++ RRG ++G GA+ A G P
Sbjct: 160 GGGKKPRRQKCAAAGQKAAAEESRRGGGKKPRRGGQKAVGAGAKKPQKAAAAGTKTPRRR 219
Query: 100 RRP------WSSRLSAGTA--PPRVLSMTFSTPVSVR 128
R+ W + +AG + P + S++FS P+ +R
Sbjct: 220 RQKAAKAAVWGQKAAAGESLTPNSLASVSFSRPMFLR 256
Score = 29.3 bits (64), Expect = 2.2
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 3 RSPWFSIENGWETKHLMVILCAHRAAGRTRQCVRLCLSAGGGRVGRAGR------AWTVN 56
R P ++ T ++L +HR + R AG +GR G+ +WT +
Sbjct: 54 RGPCATLSGRCITPATALLLLSHRLRAQCRPMQATAAEAGSPGLGRLGKEPPSRESWTGS 113
Query: 57 PKARAA---GLRSGAPRRRRRGLSLGGGAR 83
R R+G+ R R S GGG+R
Sbjct: 114 APRRCPCQDASRAGSGVCRSRPQSRGGGSR 143
>gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens]
Length = 180
Score = 35.8 bits (81), Expect = 0.023
Identities = 38/132 (28%), Positives = 48/132 (36%), Gaps = 27/132 (20%)
Query: 43 GGRVGRAGRAWTVNPK-------ARAAGLRSGAPRRRRRGLSLGGGARGGACGAGPGLPA 95
GG G G A + ARA+G R GAPR G GGA A G
Sbjct: 28 GGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR----------GPHGGAASAQDG-RC 76
Query: 96 PTWVRRPWSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLG 155
P RRP S L ++M FS+P+ + PLP P +
Sbjct: 77 PCGARRPDSRLLQLH------ITMPFSSPMEAELVRRI---LSRDAAPLPRPGAVLKDFT 127
Query: 156 PPTSVRMARLTA 167
++ RLTA
Sbjct: 128 VSGNLLFIRLTA 139
>gi|188497630 hypothetical protein LOC55571 [Homo sapiens]
Length = 510
Score = 35.8 bits (81), Expect = 0.023
Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 42 GGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARGGACGAGPGLPAP 96
GGG +GR T A G R A R G GG RGGA G G G P
Sbjct: 3 GGGASAASGRLLTA---AEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGP 54
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 35.4 bits (80), Expect = 0.031
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 42 GGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARGGACGAGPG 92
G R+ R GRA +P G RR G GG GG CGA PG
Sbjct: 24 GKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPG 74
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 35.4 bits (80), Expect = 0.031
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 42 GGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARGGACGAGPG 92
G R+ R GRA +P G RR G GG GG CGA PG
Sbjct: 24 GKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPG 74
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 35.4 bits (80), Expect = 0.031
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 42 GGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARGGACGAGPG 92
G R+ R GRA +P G RR G GG GG CGA PG
Sbjct: 24 GKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPG 74
>gi|5453810 netrin 3 [Homo sapiens]
Length = 580
Score = 35.4 bits (80), Expect = 0.031
Identities = 36/96 (37%), Positives = 37/96 (38%), Gaps = 33/96 (34%)
Query: 44 GRVGRAGRAWTVNPKARAAGLRSGAPRRR-----------------------RRGLSLGG 80
G G A AWT P A A RSG R R RR L LGG
Sbjct: 471 GARGEARGAWTRFPVAVLAVFRSGEERARRGSSALWVPAGDAACGCPRLLPGRRYLLLGG 530
Query: 81 G---ARGGACGAGPGLPAP------TWVRRPWSSRL 107
G A GGA G GPGL A W R W+ RL
Sbjct: 531 GPGAAAGGAGGRGPGLIAARGSLVLPW-RDAWTRRL 565
>gi|22902136 osterix [Homo sapiens]
Length = 431
Score = 34.3 bits (77), Expect = 0.068
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 90 GPG-LPAPTWVRRPWSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFPEMVTPL-PLP 147
GPG P P W P + L G L T T + P+ P++P PL P P
Sbjct: 150 GPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLPTGPAQPPLNPQLPTYPSDFAPLNPAP 209
Query: 148 ASASHSLGP 156
A H L P
Sbjct: 210 YPAPHLLQP 218
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 34.3 bits (77), Expect = 0.068
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 46 VGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARGGA-----CGAGPGLPAPTWVR 100
+G G + P+ +A+G + ++RRR G RGGA G G PT
Sbjct: 139 IGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTG-P 197
Query: 101 RPWSSRLSAGTAPP---RVLSMTFSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPP 157
RP + S T PP R L S + +TP+ P P P PA A +L PP
Sbjct: 198 RPTGAPPSRRTPPPGPRRPLRSPHSG-------SGWTPARP----PSP-PAGAPEALRPP 245
Query: 158 TSVRMA 163
S A
Sbjct: 246 ASTTRA 251
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 34.3 bits (77), Expect = 0.068
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 46 VGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARGGA-----CGAGPGLPAPTWVR 100
+G G + P+ +A+G + ++RRR G RGGA G G PT
Sbjct: 139 IGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTG-P 197
Query: 101 RPWSSRLSAGTAPP---RVLSMTFSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPP 157
RP + S T PP R L S + +TP+ P P P PA A +L PP
Sbjct: 198 RPTGAPPSRRTPPPGPRRPLRSPHSG-------SGWTPARP----PSP-PAGAPEALRPP 245
Query: 158 TSVRMA 163
S A
Sbjct: 246 ASTTRA 251
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 34.3 bits (77), Expect = 0.068
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 46 VGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSLGGGARGGA-----CGAGPGLPAPTWVR 100
+G G + P+ +A+G + ++RRR G RGGA G G PT
Sbjct: 139 IGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTG-P 197
Query: 101 RPWSSRLSAGTAPP---RVLSMTFSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPP 157
RP + S T PP R L S + +TP+ P P P PA A +L PP
Sbjct: 198 RPTGAPPSRRTPPPGPRRPLRSPHSG-------SGWTPARP----PSP-PAGAPEALRPP 245
Query: 158 TSVRMA 163
S A
Sbjct: 246 ASTTRA 251
>gi|6912372 forkhead box D3 [Homo sapiens]
Length = 478
Score = 34.3 bits (77), Expect = 0.068
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 39 LSAGGGRVGRAGRAWTV------NPKARAA----GLRSGAPRRRRRGLSLGGGARGGACG 88
L A G AG A T P AR + + G P G ++G G GG G
Sbjct: 348 LGAAAAAAGTAGAAGTTASLIKSEPSARPSFSIENIIGGGPAAPG-GSAVGAGVAGGTGG 406
Query: 89 AGPGLPAPTWVRRPWSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFPEMVTPLPLPA 148
+G G A +++R P + + +A A + LS++ T ++ PI + P + + P A
Sbjct: 407 SGGGSTAQSFLRPPGTVQSAALMATHQPLSLS-RTTATIAPILS-VPLSGQFLQPAASAA 464
Query: 149 SAS 151
+A+
Sbjct: 465 AAA 467
>gi|50878302 Fc receptor-like B [Homo sapiens]
Length = 426
Score = 34.3 bits (77), Expect = 0.068
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 90 GPGLP---APTWVRRPWSSRLSAGTAPPRVLSMTFSTPVSVRPITAFTPSFPEMVTPLPL 146
GPG P A T PW++ L+ G P ++F P R + T T L
Sbjct: 287 GPGSPLDPASTTAPAPWAAALAPGNRP-----LSFRKPPVSRSVPLVTSVRNTTSTGLQF 341
Query: 147 PASASHSLGPP 157
PAS + + GPP
Sbjct: 342 PASGAPTAGPP 352
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 33.9 bits (76), Expect = 0.089
Identities = 43/138 (31%), Positives = 54/138 (39%), Gaps = 34/138 (24%)
Query: 62 AGLRSGAPRRRRRGLSLGGGARGGACGAGPGL---------PAPTWV------RRPWSSR 106
A +R G RR R +G G GG C GP L PAP RP ++R
Sbjct: 12 AAVRGGGAGRRVR---VGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAPRERPAAAR 68
Query: 107 LSA-GTAPPRVLS----------MTFSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLG 155
LSA A PR S + P +++P A P+ P +P PLPA S
Sbjct: 69 LSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGA--PAVPAAPSPGPLPARPS---S 123
Query: 156 PPTSVRMARLTARNKSCP 173
PP S + S P
Sbjct: 124 PPPSPPSPPVPTAQSSLP 141
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 33.9 bits (76), Expect = 0.089
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 41 AGGGRVGRAGRAWTVNPKARAAGLRSGAPRRRRRGLSL--GGGARGGACGAGPGLPAPTW 98
AGGG GR R +P+ R +G R+ RRR G + G + G G G TW
Sbjct: 32 AGGGGGGREKRGRPESPRRRRSGERASPARRRGPGATTRPGRWSLGSVFRKGEG----TW 87
Query: 99 VRRPWSSRLSAGTAPPRV---LSMTFSTPVSVRPITAFTPSFPEMVTPLPLPA 148
RR RL A A PR L + +++ P PS+ TP+ +PA
Sbjct: 88 RRR----RLLA-AADPRASPCLPVRGILSLTLLPARQLPPSW-RKTTPVLIPA 134
>gi|169167822 PREDICTED: similar to hCG17429 [Homo sapiens]
Length = 353
Score = 33.5 bits (75), Expect = 0.12
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 28/141 (19%)
Query: 57 PKARAAGLRSGAPRRRRRGLSLGGGA---RGGACGAGPGLPAPTWVRRPWSSRLSAGTAP 113
P A LR RRR R G + + ACG P P +R +A AP
Sbjct: 33 PNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH-PNAPC---------ARDTADPAP 82
Query: 114 PRVLSMT-FSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPPTSVRMARLTARNKSC 172
+ S+T F P + PI A +P+ PL + AS+ GP +R ++
Sbjct: 83 --LCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGP--------FHSRGQAK 132
Query: 173 PVTHLL----PSQPGRFLTAS 189
P+ L P+QP RF +AS
Sbjct: 133 PLCLCLGLRPPAQPPRFPSAS 153
>gi|169167904 PREDICTED: similar to hCG17429 [Homo sapiens]
Length = 353
Score = 33.5 bits (75), Expect = 0.12
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 28/141 (19%)
Query: 57 PKARAAGLRSGAPRRRRRGLSLGGGA---RGGACGAGPGLPAPTWVRRPWSSRLSAGTAP 113
P A LR RRR R G + + ACG P P +R +A AP
Sbjct: 33 PNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH-PNAPC---------ARDTADPAP 82
Query: 114 PRVLSMT-FSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPPTSVRMARLTARNKSC 172
+ S+T F P + PI A +P+ PL + AS+ GP +R ++
Sbjct: 83 --LCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGP--------FHSRGQAK 132
Query: 173 PVTHLL----PSQPGRFLTAS 189
P+ L P+QP RF +AS
Sbjct: 133 PLCLCLGLRPPAQPPRFPSAS 153
>gi|239742531 PREDICTED: similar to hCG17429 [Homo sapiens]
Length = 353
Score = 33.5 bits (75), Expect = 0.12
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 28/141 (19%)
Query: 57 PKARAAGLRSGAPRRRRRGLSLGGGA---RGGACGAGPGLPAPTWVRRPWSSRLSAGTAP 113
P A LR RRR R G + + ACG P P +R +A AP
Sbjct: 33 PNPPAHSLRHRPSRRRERDTKRHGASSPPKPAACGH-PNAPC---------ARDTADPAP 82
Query: 114 PRVLSMT-FSTPVSVRPITAFTPSFPEMVTPLPLPASASHSLGPPTSVRMARLTARNKSC 172
+ S+T F P + PI A +P+ PL + AS+ GP +R ++
Sbjct: 83 --LCSLTAFFPPGPLHPIAARSPNQKATSRNAPLSSKASYPQGP--------FHSRGQAK 132
Query: 173 PVTHLL----PSQPGRFLTAS 189
P+ L P+QP RF +AS
Sbjct: 133 PLCLCLGLRPPAQPPRFPSAS 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,258,380
Number of Sequences: 37866
Number of extensions: 532096
Number of successful extensions: 4208
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 3690
Number of HSP's gapped (non-prelim): 782
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.