Guide to the Human Genome
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Name: LOC728931 Sequence: fasta or formatted (353aa) NCBI GI: 239742531
Description:

PREDICTED: similar to hCG17429

Not currently referenced in the text

Other entries for this name:
alt prot {353aa} PREDICTED: similar to hCG17429
alt mRNA {353aa} PREDICTED: similar to hCG17429
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         30           3
 C cysteine            2.5          9           1
 D aspartate           4.2         15           1
 E glutamate           4.2         15           2
 F phenylalanine       4.8         17           2
 G glycine             5.4         19           1
 H histidine           2.8         10           1
 I isoleucine          3.1         11           1
 K lysine              4.5         16           2
 L leucine             6.5         23           1
 M methionine          2.8         10           1
 N asparagine          4.5         16           1
 P proline            12.7         45           2
 Q glutamine           5.1         18           2
 R arginine            5.9         21           3
 S serine             10.2         36           2
 T threonine           4.8         17           1
 V valine              4.0         14           1
 W tryptophan          0.8          3           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG17429 
LOC728931             1.000   PREDICTED: similar to hCG17429 
LOC728931             0.993   PREDICTED: similar to hCG17429 
AMD1                  0.230   adenosylmethionine decarboxylase 1 isoform 2 
AMD1                  0.230   adenosylmethionine decarboxylase 1 isoform 1 precurs...
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
RICH2                 0.024   Rho GTPase-activating protein RICH2 
ATN1                  0.022   atrophin-1 
ATN1                  0.022   atrophin-1 
SETD1A                0.021   SET domain containing 1A 
RERE                  0.021   atrophin-1 like protein isoform b 
RERE                  0.021   atrophin-1 like protein isoform a 
RERE                  0.021   atrophin-1 like protein isoform a 
SRRM1                 0.021   serine/arginine repetitive matrix 1 
MAST1                 0.020   microtubule associated serine/threonine kinase 1 [Ho...
RTN4                  0.020   reticulon 4 isoform B 
RTN4                  0.020   reticulon 4 isoform D 
RTN4                  0.020   reticulon 4 isoform A 
AMOTL1                0.020   angiomotin like 1 
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
ZYX                   0.020   zyxin 
ZYX                   0.020   zyxin 
RNF43                 0.018   ring finger protein 43 
HCN4                  0.017   hyperpolarization activated cyclic nucleotide-gated p...
IRS2                  0.017   insulin receptor substrate 2 
LOC100292934          0.017   PREDICTED: hypothetical protein 
YLPM1                 0.017   YLP motif containing 1 
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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