Guide to the Human Genome
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Name: LOC100291249 Sequence: fasta or formatted (194aa) NCBI GI: 239750123
Description:

PREDICTED: hypothetical protein XP_002347295

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         24           2
 C cysteine            2.6          5           1
 D aspartate           0.0          0           0
 E glutamate           1.5          3           1
 F phenylalanine       2.6          5           1
 G glycine            11.3         22           3
 H histidine           2.1          4           1
 I isoleucine          1.5          3           1
 K lysine              1.5          3           1
 L leucine             8.8         17           2
 M methionine          2.6          5           1
 N asparagine          1.5          3           1
 P proline            10.8         21           2
 Q glutamine           1.0          2           1
 R arginine           12.9         25           5
 S serine             10.8         21           2
 T threonine           7.2         14           1
 V valine              6.2         12           1
 W tryptophan          2.6          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347295 
LOC729575             0.040   PREDICTED: hypothetical protein 
LOC100288110          0.040   PREDICTED: hypothetical protein 
LOC100288110          0.040   PREDICTED: hypothetical protein XP_002343007 
PRDM2                 0.035   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.035   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.035   retinoblastoma protein-binding zinc finger protein i...
CIC                   0.035   capicua homolog 
NFATC4                0.032   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.032   nuclear factor of activated T-cells, cytoplasmic, ca...
BCORL1                0.032   BCL6 co-repressor-like 1 
RSBN1                 0.032   round spermatid basic protein 1 
LOC100292383          0.029   PREDICTED: hypothetical protein 
CTAG2                 0.029   cancer/testis antigen 2 isoform LAGE-1a 
C2orf29               0.029   hypothetical protein LOC55571 
LOC100128979          0.027   PREDICTED: hypothetical protein 
LOC100128979          0.027   PREDICTED: hypothetical protein 
LOC100128979          0.027   PREDICTED: hypothetical protein 
NTN3                  0.027   netrin 3 
SP7                   0.024   osterix 
LOC729570             0.024   PREDICTED: hypothetical protein 
LOC729570             0.024   PREDICTED: hypothetical protein 
LOC729570             0.024   PREDICTED: hypothetical protein 
FOXD3                 0.024   forkhead box D3 
FCRLB                 0.024   Fc receptor-like B 
LOC100131102          0.024   PREDICTED: hypothetical protein 
LOC100288548          0.024   PREDICTED: hypothetical protein XP_002342129 
LOC728931             0.021   PREDICTED: similar to hCG17429 
LOC728931             0.021   PREDICTED: similar to hCG17429 
LOC728931             0.021   PREDICTED: similar to hCG17429 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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