Guide to the Human Genome
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Name: LOC729575 Sequence: fasta or formatted (501aa) NCBI GI: 239755232
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         59           3
 C cysteine            1.8          9           1
 D aspartate           2.8         14           1
 E glutamate           4.0         20           2
 F phenylalanine       2.0         10           2
 G glycine            11.0         55           2
 H histidine           2.6         13           2
 I isoleucine          1.2          6           1
 K lysine              4.8         24           5
 L leucine             9.2         46           2
 M methionine          1.4          7           2
 N asparagine          2.4         12           1
 P proline            10.0         50           4
 Q glutamine           4.6         23           3
 R arginine           11.2         56           3
 S serine              8.0         40           2
 T threonine           5.4         27           2
 V valine              3.4         17           2
 W tryptophan          1.6          8           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288110          0.521   PREDICTED: hypothetical protein 
LOC100288110          0.521   PREDICTED: hypothetical protein XP_002343007 
LOC100129852          0.023   PREDICTED: hypothetical protein 
LOC100130128          0.023   PREDICTED: hypothetical protein 
LOC100129852          0.023   PREDICTED: hypothetical protein 
LOC100129852          0.023   PREDICTED: hypothetical protein 
LOC100130128          0.022   PREDICTED: hypothetical protein 
LOC100130128          0.022   PREDICTED: hypothetical protein 
LOC100133885          0.022   PREDICTED: hypothetical protein 
BBC3                  0.019   BCL2 binding component 3 isoform 1 
LOC100129098          0.019   PREDICTED: hypothetical protein 
GGN                   0.018   gametogenetin 
FAM148B               0.018   nuclear localized factor 2 
LOC389333             0.018   hypothetical protein LOC389333 
GAS2L1                0.018   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.018   growth arrest-specific 2 like 1 isoform a 
LOC100290274          0.017   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.017   PREDICTED: hypothetical protein XP_002342846 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
LOC100291071          0.017   PREDICTED: hypothetical protein XP_002346951 
FLJ22184              0.017   PREDICTED: hypothetical protein LOC80164 
LOC100287198          0.017   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.017   PREDICTED: hypothetical protein 
LOC100129129          0.017   PREDICTED: hypothetical protein 
LOC100127891          0.017   PREDICTED: hypothetical protein 
LOC100293596          0.017   PREDICTED: similar to mucin 
LOC100287104          0.017   PREDICTED: hypothetical protein XP_002343630 
KIF22                 0.017   kinesin family member 22 
SH3BP1                0.017   SH3-domain binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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