Guide to the Human Genome
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Name: LOC728931 Sequence: fasta or formatted (353aa) NCBI GI: 169167822
Description:

PREDICTED: similar to hCG17429

Not currently referenced in the text

Other entries for this name:
alt prot {353aa} PREDICTED: similar to hCG17429
alt prot {353aa} PREDICTED: similar to hCG17429
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         30           3
 C cysteine            2.5          9           1
 D aspartate           4.2         15           1
 E glutamate           4.2         15           2
 F phenylalanine       4.8         17           2
 G glycine             5.4         19           1
 H histidine           2.8         10           1
 I isoleucine          3.1         11           1
 K lysine              4.5         16           2
 L leucine             6.5         23           1
 M methionine          2.8         10           1
 N asparagine          4.5         16           1
 P proline            12.5         44           2
 Q glutamine           5.4         19           2
 R arginine            5.7         20           3
 S serine             10.5         37           2
 T threonine           4.8         17           1
 V valine              4.0         14           1
 W tryptophan          0.8          3           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG17429 
LOC728931             0.994   PREDICTED: similar to hCG17429 
LOC728931             0.994   PREDICTED: similar to hCG17429 
AMD1                  0.230   adenosylmethionine decarboxylase 1 isoform 2 
AMD1                  0.230   adenosylmethionine decarboxylase 1 isoform 1 precurs...
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
SETD1A                0.024   SET domain containing 1A 
ATN1                  0.024   atrophin-1 
ATN1                  0.024   atrophin-1 
RERE                  0.022   atrophin-1 like protein isoform b 
RERE                  0.022   atrophin-1 like protein isoform a 
RERE                  0.022   atrophin-1 like protein isoform a 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.021   PREDICTED: hypothetical protein LOC80164 
MAST1                 0.020   microtubule associated serine/threonine kinase 1 [Ho...
AMOTL1                0.020   angiomotin like 1 
RICH2                 0.020   Rho GTPase-activating protein RICH2 
HCN4                  0.018   hyperpolarization activated cyclic nucleotide-gated p...
RNF43                 0.018   ring finger protein 43 
IRS2                  0.017   insulin receptor substrate 2 
YLPM1                 0.017   YLP motif containing 1 
SRRM1                 0.017   serine/arginine repetitive matrix 1 
MLL5                  0.017   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.017   myeloid/lymphoid or mixed-lineage leukemia 5 
HIVEP3                0.017   human immunodeficiency virus type I enhancer bindin...
SRRM2                 0.017   splicing coactivator subunit SRm300 
DRD4                  0.015   dopamine receptor D4 
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
EP300                 0.014   E1A binding protein p300 
ZYX                   0.014   zyxin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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