Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239750099
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750099 PREDICTED: hypothetical protein XP_002347292 [Homo
sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750099 PREDICTED: hypothetical protein XP_002347292 [Homo ... 219 5e-58
gi|239744409 PREDICTED: hypothetical protein XP_002343155 [Homo ... 216 4e-57
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 2e-05
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 40 3e-04
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 40 3e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 40 5e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 39 7e-04
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 39 0.001
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 39 0.001
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 38 0.002
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 38 0.002
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 38 0.002
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 38 0.002
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 38 0.002
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 38 0.002
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 38 0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 37 0.003
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 37 0.003
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 37 0.003
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 37 0.003
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 37 0.003
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 37 0.003
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 37 0.003
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 37 0.003
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 37 0.003
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 37 0.003
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 37 0.003
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 37 0.003
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 37 0.003
gi|169211438 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
>gi|239750099 PREDICTED: hypothetical protein XP_002347292 [Homo
sapiens]
Length = 106
Score = 219 bits (557), Expect = 5e-58
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS
Sbjct: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
Query: 61 GAQGPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGSGCA 106
GAQGPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGSGCA
Sbjct: 61 GAQGPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGSGCA 106
>gi|239744409 PREDICTED: hypothetical protein XP_002343155 [Homo
sapiens]
Length = 106
Score = 216 bits (549), Expect = 4e-57
Identities = 105/106 (99%), Positives = 105/106 (99%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS
Sbjct: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
Query: 61 GAQGPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGSGCA 106
GAQGPQRPRPAHYNSQEASRPDRRGATRE CVCGESRRPAHGSGCA
Sbjct: 61 GAQGPQRPRPAHYNSQEASRPDRRGATRERCVCGESRRPAHGSGCA 106
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 44.3 bits (103), Expect = 2e-05
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG RG GP+ R F P GEA + +G PP R G+ GR GA+
Sbjct: 1462 GSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGE---KGERGPPGPAGSRGLPGVAGRPGAK 1518
Query: 64 GPQRPRPAHYNSQEASRPDRRG 85
GP+ P E P R G
Sbjct: 1519 GPEGPPGPTGRQGEKGEPGRPG 1540
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG+ RG + GP P G+ P G P L +GL G+ GA G
Sbjct: 1737 GLPGAPGERGIEGFRGPPG-----PQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAG 1791
Query: 65 PQRPRPAHYNSQEASRPDRRGATREGCVCGESRRP 99
P P A + + R G E + G S P
Sbjct: 1792 PSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPP 1826
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFA-PAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG RG + GP R A P G P G PP S A+GL+G G
Sbjct: 2404 GFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDP 2463
Query: 64 GPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRP 99
G P P RG E + GE RP
Sbjct: 2464 GVGLPGP-------------RGERGEPGIRGEDGRP 2486
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPA-GEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
GL G+ GS+ GP+ R G+ + PRG P P R AG G+ G Q
Sbjct: 2111 GLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQ 2170
Query: 64 GPQRP 68
GP+ P
Sbjct: 2171 GPRGP 2175
Score = 33.9 bits (76), Expect = 0.029
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 2 SLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP-----RGSASPPRSPALRPAAGL 56
++SGL ++ + PE + P G QK P RG PP P GL
Sbjct: 1225 AVSGLATALCQASFTTQPRPEPCPVYCPKG--QKGEPGEMGLRGQVGPPGDP------GL 1276
Query: 57 RGRSGAQGPQRP 68
GR+GA GPQ P
Sbjct: 1277 PGRTGAPGPQGP 1288
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
SG PG +G R GP P G + +G PP P L AG RG GA
Sbjct: 1609 SGPPGE---KGDPGRPGPPG--PVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAP 1663
Query: 64 GPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRP 99
G + P + + R G+ G+ P
Sbjct: 1664 GVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEP 1699
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G G G D R+G + G A + P G+A P GLRG G
Sbjct: 1766 AGEKGDRGPPGLDGRSGLDG-----KPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLP 1820
Query: 64 GPQRPRPAHYNSQEASRPDRRGATREGCVCGESRR 98
GP P E +P G E GE R
Sbjct: 1821 GPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGR 1855
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG + G + + G + P G G PP +P L AG +G SG +G
Sbjct: 2153 GLPGERGMAGPEGKPGLQG-----PRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKG 2207
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPR-----SPALRPAAGLR 57
+ G PG GS GP + P G +G PP +P + A G R
Sbjct: 2708 IGGFPGPSGNDGSAGPPGPPG--SVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGER 2765
Query: 58 GRSGAQGPQRPRPAHYNSQEASRPDRRGATR----EGCVC 93
G G GP PR + D RG R + C C
Sbjct: 2766 GEQGRPGPAGPR-GEKGEAALTEDDIRGFVRQEMSQHCAC 2804
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG+ ++GS GP GE P+G P GL GR G G
Sbjct: 1317 GTPGAPGLKGSPGLPGPRG-----DPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPG 1371
Query: 65 PQRP 68
P P
Sbjct: 1372 PSGP 1375
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/65 (32%), Positives = 23/65 (35%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
SG PG G GP L A G+ RG P GL G G+
Sbjct: 1373 SGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSP 1432
Query: 64 GPQRP 68
GPQ P
Sbjct: 1433 GPQGP 1437
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAF----APAGEAQKTLPRG---------------S 41
M G+PG G + GP+ R F P G+ + RG S
Sbjct: 2661 MGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGS 2720
Query: 42 ASPPRSPAL---RPAAGLRGRSGAQGPQRPR 69
A PP P R GL+G+ G +GP R
Sbjct: 2721 AGPPGPPGSVGPRGPEGLQGQKGERGPPGER 2751
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 4 SGLPGSVSVRGSDRRAGPES-----------LRAFAPAGEAQKTLPRGSASPPRSPALRP 52
+G PGS +G GP R G+ + PRG P P L
Sbjct: 1684 NGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRG---PKGDPGLPG 1740
Query: 53 AAGLRGRSGAQGPQRPR 69
A G RG G +GP P+
Sbjct: 1741 APGERGIEGFRGPPGPQ 1757
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFA-PAGEAQKTLPRGSASPPRS---PALRPAAGLRG 58
+ G G RG D G R A P G+ PRG P P A GL G
Sbjct: 2136 IKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAG 2195
Query: 59 RSGAQGP 65
+G QGP
Sbjct: 2196 PAGPQGP 2202
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG V G G + G + K RGS P SP L G +G G G
Sbjct: 2245 GLPGQVGETGKPGAPGRD--------GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTG 2296
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 21 PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQGP 65
P R P G++ + P G P P R G RG G QGP
Sbjct: 1972 PVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGP 2016
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 24/77 (31%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALR------PAAGLRG 58
G G +RG D R G E PRG PP S R +AGL+G
Sbjct: 2472 GERGEPGIRGEDGRPGQEG--------------PRGLTGPPGSRGERGEKGDVGSAGLKG 2517
Query: 59 RSGAQ----GPQRPRPA 71
G GP PR A
Sbjct: 2518 DKGDSAVILGPPGPRGA 2534
Score = 26.6 bits (57), Expect = 4.6
Identities = 25/87 (28%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRS-----PALRPAAGLRG 58
G G RG R GP L P G + P S P L+ A G G
Sbjct: 2061 GERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPG 2120
Query: 59 RSGAQGPQRPRPAHYNSQEASRPDRRG 85
+G QGP+ R + P RG
Sbjct: 2121 SNGDQGPKGDRGVPGIKGDRGEPGPRG 2147
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG +G GP L P G+ +GS P GLRG G Q
Sbjct: 2527 GPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQ 2586
Query: 64 G 64
G
Sbjct: 2587 G 2587
Score = 26.2 bits (56), Expect = 6.1
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L GLPGS +G GP + G+++ P G P SP + G RG GA
Sbjct: 1425 LPGLPGSPGPQGP---VGPPGKKG--EKGDSEDGAP-GLPGQPGSPGEQ---GPRGPPGA 1475
Query: 63 QGPQRPRPAHYNSQEASRPDRRG 85
GP+ R EA RG
Sbjct: 1476 IGPKGDRGFPGPLGEAGEKGERG 1498
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 6 LPGSVSVRGSDRRAGPESLRAFA-PAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
LPG +G GP L A P G++ P G P P G RGR G G
Sbjct: 1581 LPGDPGPKGDPGDRGPIGLTGRAGPPGDSG---PPGEKGDPGRPGPPGPVGPRGRDGEVG 1637
Score = 26.2 bits (56), Expect = 6.1
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTL--PRGSASPPRSPALRPAAGLRGRSGA 62
G PG G GP + P Q+ P+G P +P R G RG G
Sbjct: 1697 GEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGP 1756
Query: 63 QG 64
QG
Sbjct: 1757 QG 1758
Score = 26.2 bits (56), Expect = 6.1
Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G G G + R GP+ R G P+G P P P G G G G
Sbjct: 1857 GEKGDSGASGREGRDGPKGER-----GAPGILGPQGPPGLP-GPVGPPGQGFPGVPGGTG 1910
Query: 65 PQRPRPAHYNSQEASRPDRRGATRE 89
P+ R + E P RG E
Sbjct: 1911 PKGDRGETGSKGEQGLPGERGLRGE 1935
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSAS---PPRSPALRPAAGLRGRS 60
+G G ++G GP P G P G + P SP L G G+
Sbjct: 2197 AGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKP 2256
Query: 61 GAQG 64
GA G
Sbjct: 2257 GAPG 2260
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 40.4 bits (93), Expect = 3e-04
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 9 SVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPR-SPALRPAAGLRGRSGAQGPQ 66
S + RG RA P +LR F+P G ASPPR SP RP + RGRSGA+ +
Sbjct: 125 SAAQRGGPARAQVPPALRTFSP----------GPASPPRASPGGRPGSEARGRSGAECAR 174
Query: 67 RPRPAHYNSQEAS 79
R P H+ AS
Sbjct: 175 RV-PLHHGPPGAS 186
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 40.4 bits (93), Expect = 3e-04
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 9 SVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPR-SPALRPAAGLRGRSGAQGPQ 66
S + RG RA P +LR F+P G ASPPR SP RP + RGRSGA+ +
Sbjct: 125 SAAQRGGPARAQVPPALRTFSP----------GPASPPRASPGGRPGSEARGRSGAECAR 174
Query: 67 RPRPAHYNSQEAS 79
R P H+ AS
Sbjct: 175 RV-PLHHGPPGAS 186
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 39.7 bits (91), Expect = 5e-04
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
+ L G PG +G GP+ + P GE T P G PP P L G +G
Sbjct: 1488 IGLIGPPGEQGEKGDRGLPGPQG--SSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAK 1545
Query: 61 GAQGPQRPR 69
G+ GP P+
Sbjct: 1546 GSSGPTGPK 1554
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRA-FAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
++G PG G D AGP R P G P+G PP L G RG +G
Sbjct: 926 ITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETG 985
Query: 62 AQGPQRP 68
QG P
Sbjct: 986 FQGKTGP 992
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
L G G RG GP L+ P GE +T G PP P R +G G G
Sbjct: 1208 LFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADG 1267
Query: 62 AQGP 65
QGP
Sbjct: 1268 PQGP 1271
Score = 33.9 bits (76), Expect = 0.029
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 29 PAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
PAG T G PP S GL+G G GPQ PR A +P RRG
Sbjct: 560 PAGPMGLTGRPGPVGPPGS------GGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRG 610
Score = 33.1 bits (74), Expect = 0.050
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTL--PRGSASPPRSPALRPAAGLRGRSGA 62
G PG RG D GP L P + L P+G PP P + G G G
Sbjct: 655 GPPGDDGERGDDGEVGPRGL----PGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGN 710
Query: 63 QGPQ 66
GPQ
Sbjct: 711 VGPQ 714
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 3 LSGLPGSVSVRGSDRRAGPES----LRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRG 58
L G PG G + GP + P GE RG PP P + GL G
Sbjct: 974 LPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAG 1033
Query: 59 RSGAQGPQRP 68
+ G +G P
Sbjct: 1034 KEGTKGDPGP 1043
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP--------RGSASPPRSPALRPAAGL 56
G PG + G D GP LR F + LP +G+ PP P + G
Sbjct: 1039 GDPGPAGLPGKD---GPPGLRGFP----GDRGLPGPVGALGLKGNEGPPGPPGPAGSPGE 1091
Query: 57 RGRSGAQGP 65
RG +GA GP
Sbjct: 1092 RGPAGAAGP 1100
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQ------KTLPRGSASPPRSPALRPAAGLR 57
G G + +G+ + GP+ LR P GE P G PP P L+ +G +
Sbjct: 1420 GKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPK 1479
Query: 58 GRSGAQG 64
G G G
Sbjct: 1480 GEKGHPG 1486
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L+GLPG RG +GP P G+ + G P P GL G G
Sbjct: 635 LAGLPGEKGHRGDPGPSGPP-----GPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGP 689
Query: 63 QGPQRP 68
GP P
Sbjct: 690 PGPPGP 695
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 4 SGLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
SG PG+ +G G P ++ GEA + G PP R G G SGA
Sbjct: 1260 SGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGA 1319
Query: 63 QGPQRPR 69
GP P+
Sbjct: 1320 AGPPGPK 1326
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGE----AQKTLPR--GSASPPRSPALRPAAGLRG 58
G PG G+ GP+ A P GE + LP G+ PP P G +G
Sbjct: 718 GPPGQQGNPGAQGLPGPQG--AIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKG 775
Query: 59 RSGAQGPQRP 68
G GPQ P
Sbjct: 776 GQGPPGPQGP 785
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 1 MSLSGLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGR 59
M GLPG G G P + P GE + RG P S + G+ G
Sbjct: 1464 MGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGP 1523
Query: 60 SGAQGPQRP 68
SG GP P
Sbjct: 1524 SGPIGPPGP 1532
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG V G D + GP+ P+G PP A GL G GA G
Sbjct: 691 GPPGPPGVTGMDGQPGPKG-----------NVGPQGEPGPPGQQGNPGAQGLPGPQGAIG 739
Query: 65 P 65
P
Sbjct: 740 P 740
Score = 28.9 bits (63), Expect = 0.94
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PGS ++G GP+ R P G A K RG A + G RG G
Sbjct: 574 GPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAG---------SDGARGMPGQT 624
Query: 64 GPQRPR 69
GP+ R
Sbjct: 625 GPKGDR 630
Score = 28.9 bits (63), Expect = 0.94
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G + ++G GP R P G + P G P P + G+ G G
Sbjct: 817 GFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYP 876
Query: 64 GPQRPR 69
G Q P+
Sbjct: 877 GRQGPK 882
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G G RG+ + GP R P G + PRG P G G G +G
Sbjct: 892 GANGEKGGRGTPGKPGPRGQRG--PTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERG 949
Query: 65 PQRPR 69
P P+
Sbjct: 950 PNGPQ 954
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG RG GP R P G K P+G++ AG G G G
Sbjct: 901 GTPGKPGPRGQRGPTGPRGERG--PRGITGKPGPKGNSGGDGP------AGPPGERGPNG 952
Query: 65 PQRP 68
PQ P
Sbjct: 953 PQGP 956
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G G + + G GP PAGE +G P L+ GL G +G
Sbjct: 1095 AGAAGPIGIPGRPGPQGPPG-----PAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPV 1149
Query: 64 GP 65
GP
Sbjct: 1150 GP 1151
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASP---PRSPALRPAAGLRGRSG 61
GLPG G G E P GE P G P P ++ A G+RG G
Sbjct: 751 GLPGMPGADGPPGHPGKEG-----PPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKG 805
Query: 62 AQG 64
+G
Sbjct: 806 TKG 808
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG RG +GP P G P+GS P P G G +G
Sbjct: 1300 GPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQD 1359
Query: 64 GP 65
GP
Sbjct: 1360 GP 1361
Score = 25.8 bits (55), Expect = 7.9
Identities = 25/84 (29%), Positives = 29/84 (34%), Gaps = 18/84 (21%)
Query: 5 GLPGSVSVRGSDRRAG-------PESLRAFAPAGEAQKTLPRGSASPPRSPA-------- 49
G PG G D G P + P GE + P G PP PA
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPP-GPAGPEGRQGE 1406
Query: 50 --LRPAAGLRGRSGAQGPQRPRPA 71
+ AGL G G GP P+ A
Sbjct: 1407 KGAKGEAGLEGPPGKTGPIGPQGA 1430
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 39.3 bits (90), Expect = 7e-04
Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PGS +G +G E R P GEA GSA PP P LR + G RG GA G
Sbjct: 361 GEPGSAGPQGPPGPSGEEGKRG--PNGEA------GSAGPPGPPGLRGSPGSRGLPGADG 412
Score = 38.5 bits (88), Expect = 0.001
Identities = 28/67 (41%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 3 LSGLPGSVSVRGSDRRAG----PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRG 58
L G PGS + G+D RAG P S A PAG P G A P P L GL G
Sbjct: 398 LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRG---PNGDAGRPGEPGLMGPRGLPG 454
Query: 59 RSGAQGP 65
G GP
Sbjct: 455 SPGNIGP 461
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASP---PRSPALRPAAGLRGRSG 61
G PG RGSD GP PAG P GSA P P +P + G G +G
Sbjct: 226 GAPGPAGARGSDGSVGP-----VGPAG------PIGSAGPPGFPGAPGPKGEIGAVGNAG 274
Query: 62 AQGPQRPR 69
GP PR
Sbjct: 275 PAGPAGPR 282
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L GLPG G + P S+ P G A + P G P AG+RG G
Sbjct: 1028 LQGLPGIAGHHGD--QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGH 1085
Query: 63 QGPQRP 68
QGP P
Sbjct: 1086 QGPAGP 1091
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G PG RG GP + F AG P G + PP P GLRG G
Sbjct: 768 NGPPGPAGSRGD---GGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGD 824
Query: 63 QGP 65
QGP
Sbjct: 825 QGP 827
Score = 33.5 bits (75), Expect = 0.038
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+GLPG V G+ GP + P G A T RG P + +G +G G+
Sbjct: 312 AGLPG---VAGAPGLPGPRGIPG--PVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSA 366
Query: 64 GPQRP 68
GPQ P
Sbjct: 367 GPQGP 371
Score = 33.1 bits (74), Expect = 0.050
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 5 GLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG RG+ G P A GEA P G A P SP R G G +G
Sbjct: 667 GNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFA 726
Query: 64 GP 65
GP
Sbjct: 727 GP 728
Score = 32.7 bits (73), Expect = 0.065
Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG RG R P A P G RG + PP + G+ G G G
Sbjct: 580 GLPGPAGPRGE--RGPPGESGAAGPTGPIGS---RGPSGPPGPDGNKGEPGVVGAVGTAG 634
Query: 65 PQRPRPAHYNSQEASRPDRRGATREGCVCGESRRP 99
P P A P +G E + GE P
Sbjct: 635 PSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNP 669
Score = 30.8 bits (68), Expect = 0.25
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G G RGS G PAG P G+A P + R A G +G +G
Sbjct: 699 AGPAGPAGPRGSPGERGE-----VGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVV 753
Query: 64 GPQRPRPAHYNSQEASRPDRRGATREG 90
GP P A + P G+ +G
Sbjct: 754 GPTGPVGAAGPAGPNGPPGPAGSRGDG 780
Score = 30.8 bits (68), Expect = 0.25
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG++ G+ GP P G A K RG P A G RG SG QG
Sbjct: 949 GYPGNIGPVGAAGAPGPHG-----PVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQG 1003
Score = 30.8 bits (68), Expect = 0.25
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PGSV G AGP PAG+ +T G+ P +R G +G +G G
Sbjct: 1042 GAPGSVGPAGPRGPAGPSG-----PAGKDGRTGHPGTVGPA---GIRGPQGHQGPAGPPG 1093
Query: 65 PQRP 68
P P
Sbjct: 1094 PPGP 1097
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 19/83 (22%)
Query: 5 GLPGSVSVRGSDRRAGPESL-----RAFAPAGEAQKTLP--------------RGSASPP 45
G PG V G+ +GP L A P G+ +K P RG+
Sbjct: 622 GEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAV 681
Query: 46 RSPALRPAAGLRGRSGAQGPQRP 68
+P A G RG +GA GP P
Sbjct: 682 GAPGPAGATGDRGEAGAAGPAGP 704
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG +RG + G + + AP + + P + +P ++ A R G RGR GA G
Sbjct: 172 GLPGFKGIRGHNGLDGLKG-QPGAPGVKGEPGAPGENGTPGQTGA-RGLPGERGRVGAPG 229
Query: 65 PQRPR 69
P R
Sbjct: 230 PAGAR 234
Score = 29.3 bits (64), Expect = 0.72
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSP------ALRPAAGLRG 58
G PG G+ AGP P GE G PP +P + AAGL G
Sbjct: 259 GAPGPKGEIGAVGNAGPAG--PAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPG 316
Query: 59 RSGAQGPQRPR 69
+GA G PR
Sbjct: 317 VAGAPGLPGPR 327
Score = 28.9 bits (63), Expect = 0.94
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+ G PG + G+ R P ++ P G G R A G G +GA
Sbjct: 473 IDGRPGPIGPAGA--RGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGA 530
Query: 63 QGPQRPRPAHYNSQEASRPDRRG 85
QGP P+ E P G
Sbjct: 531 QGPPGPQGVQGGKGEQGPPGPPG 553
Score = 28.9 bits (63), Expect = 0.94
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 5 GLPGSVSVRGSDRRAGPES-LRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G+ +G + GP + A PAG P GS P + G GR+G
Sbjct: 739 GERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPP 798
Query: 64 GPQ-------RPRPAHYNSQEASRPDRRGATREG 90
GP P PA R D+ R G
Sbjct: 799 GPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTG 832
Score = 28.9 bits (63), Expect = 0.94
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPGS RG AG ++ P G A RG SP + A G GR G G
Sbjct: 874 GLPGSRGERGLPGVAG--AVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPG 931
Query: 65 PQRP 68
P
Sbjct: 932 NDGP 935
Score = 26.9 bits (58), Expect = 3.6
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 5 GLPGSVSVRGSDRRAGP-----ESLRAFAPA--GEAQKTLPRGSASPPRSPALRPAAGLR 57
G PG G+ AGP E P GE P+G+ P +P L G+R
Sbjct: 121 GEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIR 180
Query: 58 GRSGAQG 64
G +G G
Sbjct: 181 GHNGLDG 187
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFA----PAG---EAQKTLPRGSASPPRSPALRPAAGLR 57
GLPG + G AG R PAG E+ GSA P P G R
Sbjct: 322 GLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKR 381
Query: 58 GRSGAQGPQRP 68
G +G G P
Sbjct: 382 GPNGEAGSAGP 392
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 29 PAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
PAG+ PRG PP P G G G GP P P A++ D +G
Sbjct: 34 PAGDRG---PRGERGPPGPPGRDGEDGPTGPPGPPGP--PGPPGLGGNFAAQYDGKG 85
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFA-------PAGEAQKTLPRGSASPPRSPALRPAAGLR 57
G PG G+ R GP + PAG+ PRG P A G
Sbjct: 781 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPP 840
Query: 58 GRSGAQGP 65
G +G +GP
Sbjct: 841 GFAGEKGP 848
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGEAQKTLPRGSASPPRSPALRPAAGLR--- 57
G PG+ G D + G + R + P G A P G P R G
Sbjct: 928 GNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPV 987
Query: 58 GRSGAQGPQRPRPAHYNSQEASRPDRRG 85
G +GA GP+ P + P +G
Sbjct: 988 GPAGAVGPRGPSGPQGIRGDKGEPGEKG 1015
Score = 25.8 bits (55), Expect = 7.9
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 3 LSGLPGSVSVRGSDRRAGPES----------LRAFAPAGEAQKTLPRG---SASPPRSP- 48
+SG PG G + GP + A P G A + P G +A PP +P
Sbjct: 803 ISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPG 862
Query: 49 --ALRPAAGLRGRSGAQG 64
L A G+ G G++G
Sbjct: 863 PQGLLGAPGILGLPGSRG 880
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 5 GLPGSVSVRGSDRRAGPES-LRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G RG +GP A P G + RG P R GL+G +G Q
Sbjct: 970 GPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQ 1029
Query: 64 G 64
G
Sbjct: 1030 G 1030
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 38.9 bits (89), Expect = 0.001
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG RG R GP P GE + P G PP S LR G G G QG
Sbjct: 993 GTPGMQGRRGEPGRYGPPGFHRGEP-GEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQG 1051
Query: 65 -PQRPRPAHYNSQEASR 80
P P P ++ + +R
Sbjct: 1052 EPGSPGPPGFSGIDGAR 1068
Score = 37.0 bits (84), Expect = 0.003
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PGS G +G + L P G + P GS+ PP P GLRG+ G
Sbjct: 1088 GEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQPGEM 1147
Query: 64 GPQRPR 69
G PR
Sbjct: 1148 GDPGPR 1153
Score = 32.3 bits (72), Expect = 0.085
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-----APAGEAQKTLPRGSASPPRSPALRPAAGLRGR 59
G PG RG+ G L + AP G+ Q G PP ++ GL GR
Sbjct: 822 GPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQP----GDVGPPGPAGMKGLPGLPGR 877
Query: 60 SGAQGP 65
GA GP
Sbjct: 878 PGAHGP 883
Score = 32.3 bits (72), Expect = 0.085
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG G D GP+ + PA P+G P P A+G +G G QG
Sbjct: 1054 GSPGPPGFSGIDGARGPKGNKG-DPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQG 1112
Query: 65 PQ----RPRP 70
P+ RP P
Sbjct: 1113 PRGSPGRPGP 1122
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG + G R GP L P + P PR P L A G+RG GA G
Sbjct: 1340 GPPGEKGLPGPPGRKGPTGL----PGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMG 1395
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG V + G G +P G PRG PP P G G +G
Sbjct: 1198 GPPGPVGIPGLKGERGDPGSPGISPPG------PRGKKGPPGPPGSSGPPGPAGATGRAP 1251
Query: 65 PQRPRPAHYNSQEASRPD-RRGA 86
P P Q PD RGA
Sbjct: 1252 KDIPDPGPPGDQGPPGPDGPRGA 1274
Score = 30.4 bits (67), Expect = 0.32
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+SGLPG +RG+ GP A +QK P G PP G +G G
Sbjct: 940 MSGLPGDRGLRGAKGAIGPPGDEG-EMAIISQKGTP-GEPGPPGDDGFPGERGDKGTPGM 997
Query: 63 QGPQRPRPAHY 73
QG +R P Y
Sbjct: 998 QG-RRGEPGRY 1007
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GL G ++G G L P G +G P SP + P G RG+ G G
Sbjct: 1175 GLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISP-PGPRGKKGPPG 1233
Query: 65 P 65
P
Sbjct: 1234 P 1234
Score = 28.9 bits (63), Expect = 0.94
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPR---GSASPPRSPALRPAAGLRGR 59
+ G+PG V + G R G + A G PR GS P P L+ GL G
Sbjct: 274 IKGIPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGD 333
Query: 60 SGAQGPQRPR 69
G G P+
Sbjct: 334 PGLFGLIGPK 343
Score = 28.9 bits (63), Expect = 0.94
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G+PG G GP L+ G+ P G P SP L GL+G+ G +G
Sbjct: 1136 GMPGLRGQPGEMGDPGPRGLQ-----GDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKG 1190
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPR-----GSASPPRSPALRPAAGLR 57
L G PGS G + P + PAG K LP G+ PP P + G
Sbjct: 841 LPGYPGSPGAPGG--KGQPGDVGPPGPAG--MKGLPGLPGRPGAHGPPGLPGIPGPFGDD 896
Query: 58 GRSGAQGPQRPR 69
G G GP+ PR
Sbjct: 897 GLPGPPGPKGPR 908
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRA---------FAPAGEAQKTLPRGSASPPRSPALRPAAG 55
G+PG VRG D G + P G P+G P +P L + G
Sbjct: 645 GVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDG 704
Query: 56 LRGRSGAQG 64
+GR G G
Sbjct: 705 HKGRPGTPG 713
Score = 26.9 bits (58), Expect = 3.6
Identities = 28/108 (25%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG G D + G + P G P G PP L G +G +G G
Sbjct: 1307 GPPGYKGFPGCDGKDGQKG-----PVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPG 1361
Query: 65 PQRPRPAHYNSQEASR-------PDRRGATREGCVCGESRRPAHGSGC 105
P+ + + R P RG EG + R G GC
Sbjct: 1362 PRGEPGPPADVDDCPRIPGLPGAPGMRGP--EGAMGLPGMRGPSGPGC 1407
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFA--PAGEAQK---------TLPRGSASPPRSPALR 51
L GLPGS + S GP+ ++ P G K G PP P
Sbjct: 449 LQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPP--- 505
Query: 52 PAAGLRGRSGAQG 64
GL GR G++G
Sbjct: 506 ---GLPGRQGSKG 515
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGE-AQKTLP--RGSASPPRSPALRPAAGLRGRSG 61
G PGS V G G + P G+ +P +G P P AG+ G G
Sbjct: 745 GPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLG 804
Query: 62 AQGPQ 66
+GP+
Sbjct: 805 LKGPK 809
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPGSV + + G+ P G PP P + G G+ G +G
Sbjct: 1279 GLPGSVDLLRGE-------------PGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKG 1325
Query: 65 P 65
P
Sbjct: 1326 P 1326
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
+ GLPG + G GP L P G+ P G P P G RG+ G
Sbjct: 868 MKGLPG---LPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPG 924
Query: 62 AQG 64
A+G
Sbjct: 925 AEG 927
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG G D GP P G PRG P P R G G GA+G
Sbjct: 885 GLPGIPGPFGDDGLPGPPG-----PKG------PRGLPGFPGFPGERGKPGAEGCPGAKG 933
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 38 PRGSASPPRSPALR------PAAGLRGRSGAQGPQRPRPAHYNSQE------ASRPDRRG 85
P+G+ + PRSPA+R P+ G GR A P P H+ Q A+RP R
Sbjct: 8 PQGALAAPRSPAVRRKGLQAPSWGSPGRPAAHSPWACGPPHWGPQRGPRNAAAARPGPRS 67
Query: 86 ATREGC--VCGESRRP 99
+ C CG RP
Sbjct: 68 RWHKRCAAACGACARP 83
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG+ GSD GP+ + P G + +G P P L A GL G G Q
Sbjct: 522 GAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQ 581
Query: 64 GPQ 66
GP+
Sbjct: 582 GPE 584
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 3 LSGLPGSVSVRGSDRRAGPES-LRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
L G G V GS AGP + A P G RG P +P R A G+ G+ G
Sbjct: 307 LEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPG 366
Query: 62 AQGP 65
GP
Sbjct: 367 PMGP 370
Score = 36.2 bits (82), Expect = 0.006
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G PG G + GP LR G + RG A PP P + G G+ G
Sbjct: 923 AGAPGPAGPLGEPGKEGPPGLRG--DPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPD 980
Query: 64 GPQRPRPAHYNSQE--ASRPDRRG 85
GP P PA Q P +RG
Sbjct: 981 GP--PGPAGTTGQRGIVGMPGQRG 1002
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRA-FAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
SG PG+ ++G AGP R P G+ +T P G P SP L A G G GA
Sbjct: 377 SGFPGNPGMKGE---AGPTGARGPEGPQGQRGETGPPG---PVGSPGLPGAIGTDGTPGA 430
Query: 63 QGP 65
+GP
Sbjct: 431 KGP 433
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG+ GS R GP PAG P G P LR G GR G +G
Sbjct: 903 GPPGATGFPGSAGRVGPPG-----PAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRG 957
Query: 65 PQRP 68
P P
Sbjct: 958 PAGP 961
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 8 GSVSVRGSDRRAGPESLRAF----------APAGEAQKTLPRGSASPPRS---PALRPAA 54
G + +G++ AG + R P GE + PRG PP S P R
Sbjct: 780 GGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGEN 839
Query: 55 GLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
G G G GPQ P E P ++G
Sbjct: 840 GPTGAVGFAGPQGPDGQPGVKGEPGEPGQKG 870
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG++ G+ GP G + P GSA PP SP + + G +G G G
Sbjct: 417 GLPGAIGTDGTPGAKGP--------TGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPG 468
Score = 33.1 bits (74), Expect = 0.050
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+GLPGS G+ P + A AG+ RG PP AG RG G Q
Sbjct: 1076 AGLPGSQGAPGT-----PGPVGAPGDAGQRGDPGSRGPIGPPGR------AGKRGLPGPQ 1124
Query: 64 GPQRPRPAHYNSQEASRPDRRGAT 87
GP+ + H + + + RG T
Sbjct: 1125 GPRGDKGDHGDRGDRGQKGHRGFT 1148
Score = 30.8 bits (68), Expect = 0.25
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG RG R P ++ P GE RG P + A G RG G+ G
Sbjct: 495 GPPGEEGKRGP--RGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSG 552
Query: 65 PQRPRPAHYNSQEASRPDRRGAT 87
P+ + E P RG T
Sbjct: 553 PKGSQGDPGRPGEPGLPGARGLT 575
Score = 30.8 bits (68), Expect = 0.25
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PGS+ +RG P S+ P G + G A P R A G G G G
Sbjct: 600 GPPGSIGIRGQ-----PGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSG 654
Query: 65 PQRP 68
P P
Sbjct: 655 PVGP 658
Score = 30.4 bits (67), Expect = 0.32
Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 4 SGLPGSVSVRGSDRRAGPES-LRAFAPAGEAQKTLP------RGSASPPRSPAL--RPA- 53
+G+PG G D GP + AGE + P +G PP P +P
Sbjct: 635 AGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGD 694
Query: 54 AGLRGRSGAQGPQRPRPAHYNSQEASRPDRRGATREGCVCG 94
G+ G GA GP PR N E P G E + G
Sbjct: 695 QGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAG 735
Score = 30.0 bits (66), Expect = 0.42
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG G + GP P G +P GS+ P +P ++ AG G G +G
Sbjct: 351 GAPGQRGAHGMPGKPGP-----MGPLG-----IP-GSSGFPGNPGMKGEAGPTGARGPEG 399
Query: 65 PQRPR 69
PQ R
Sbjct: 400 PQGQR 404
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 5 GLPGSVSVRGSDRRAGPE-SLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G + G D R GP S+ G P+GS+ P P AG+ G+ GA
Sbjct: 585 GKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAP 644
Query: 64 G 64
G
Sbjct: 645 G 645
Score = 29.3 bits (64), Expect = 0.72
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
S PG + R G + P + P G A PP S R G +GR G +
Sbjct: 97 SQTPGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRP-GPAGPPGSQGPRGERGPKGRPGPR 155
Query: 64 GPQ 66
GPQ
Sbjct: 156 GPQ 158
Score = 29.3 bits (64), Expect = 0.72
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 29 PAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG-PQRP----RPAHYNSQEASRP 81
PAG PRG P P R G+ G G G P P P+H SRP
Sbjct: 133 PAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRP 190
Score = 28.9 bits (63), Expect = 0.94
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 11/65 (16%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG V G GP P GE RG+ P + G +G +G G
Sbjct: 690 GKPGDQGVPGDPGAVGP-----LGPRGE------RGNPGERGEPGITGLPGEKGMAGGHG 738
Query: 65 PQRPR 69
P P+
Sbjct: 739 PDGPK 743
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 5 GLPGSVSVRGSDRRAGPES-LRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
GLPG RG GP+ + A GEA T P G+ P G RG G +
Sbjct: 294 GLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGP---------LGPRGMPGER 344
Query: 64 GPQRPRPAHYNSQEASRPDRRGA 86
G P+ A P +RGA
Sbjct: 345 GRLGPQGA---------PGQRGA 358
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
++GLPG + G GP+ +P P G+ P L+ G RG +G
Sbjct: 724 ITGLPGEKGMAGGHGPDGPKG----SPG-------PSGTPGDTGPPGLQGMPGERGIAGT 772
Query: 63 QGPQRPR 69
GP+ R
Sbjct: 773 PGPKGDR 779
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG+ + G+ GPE K P G+ P + G+RG+ G+ G
Sbjct: 567 GLPGARGLTGNPGVQGPEG-----------KLGPLGAPGEDGRPGPPGSIGIRGQPGSMG 615
Query: 65 PQRPRPAHYNSQEASRPDRRG 85
P+ +S + +P G
Sbjct: 616 LPGPKG---SSGDPGKPGEAG 633
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFA-------------------PAGEAQKTLPRGSAS 43
L G PGS GS GP FA G+A P+G A
Sbjct: 823 LVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAG 882
Query: 44 PPRSPALRPAAGLRGRSGAQGP 65
P GL+G G QGP
Sbjct: 883 SPGPHGPNGVPGLKGGRGTQGP 904
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRA----FAPAGEAQKTLPRGSASPPRSPALRPAAGLRG 58
L G PG +GS GP R P+G+ P G PP AG G
Sbjct: 1153 LPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEG 1212
Query: 59 RSGAQGPQRP 68
G GP P
Sbjct: 1213 PPGEPGPPGP 1222
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 7 PGSVSVRGSDRRAG--------PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRG 58
P S + G D ++G P S+ P G +G A P P G G
Sbjct: 190 PFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMG 249
Query: 59 RSGAQGPQRP 68
G++GP+ P
Sbjct: 250 PIGSRGPEGP 259
Score = 26.6 bits (57), Expect = 4.6
Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G+PG RG GP AG K P G+ P G G G G
Sbjct: 996 GMPGQRGERGMPGLPGP--------AGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPG 1047
Query: 65 PQRPRPAHYNSQEASRPDRRGATRE 89
P+ P + P R GA E
Sbjct: 1048 PEGP------AGNDGTPGRDGAVGE 1066
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF----------APAGEAQKTLPRGSASPPRSPALRPA 53
+G PGS +GS GP+ +R AG + P G P P
Sbjct: 446 AGPPGSPGPQGS---TGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGK 502
Query: 54 AGLRGRSGAQGPQRP 68
G RG G GP P
Sbjct: 503 RGPRGDPGTVGPPGP 517
Score = 26.2 bits (56), Expect = 6.1
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 4 SGLPGSVSVRGSDRRAGPESL----RAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGR 59
+G PG V G+ GP + P GE P G A +P A G RG
Sbjct: 1013 AGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPG---PEGPAGNDGTPGRDGAVGERGD 1069
Query: 60 SGAQGP 65
G GP
Sbjct: 1070 RGDPGP 1075
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG RG G R G T +G PP + +AG+ G G +G
Sbjct: 1119 GLPGPQGPRGDKGDHGDRGDRG--QKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRG 1176
Query: 65 PQRP 68
P P
Sbjct: 1177 PPGP 1180
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 31 GEAQKTLPRGSASPPRSPALRPAA-GLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
G RG P L P G+RGR G GP + RP RG
Sbjct: 101 GGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRG 156
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG +GS+ GP+ L+ + GE P G P+ P P G +G G QG
Sbjct: 406 GFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVG----PQGPMGIPGIGSQGEQGIQG 461
Query: 65 PQRP 68
P P
Sbjct: 462 PIGP 465
Score = 33.5 bits (75), Expect = 0.038
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASP--PRSPALRPAAGLRGRSGA 62
G PG RG GP LR G + RG P PR + G G+ G
Sbjct: 638 GYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGL 697
Query: 63 QGPQRPRPAHYNSQ 76
GP P P Y SQ
Sbjct: 698 PGP--PGPPGYGSQ 709
Score = 32.3 bits (72), Expect = 0.085
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG V G D AG + A + +G P + + G +G+ G G
Sbjct: 510 GLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPG 569
Query: 65 PQRPR 69
P+ P+
Sbjct: 570 PEGPK 574
Score = 32.3 bits (72), Expect = 0.085
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGE-AQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G G VRG +GP + P G+ QK LP PP P G +G G
Sbjct: 663 TGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLP----GPPGPPGY----GSQGIKGE 714
Query: 63 QGPQ 66
QGPQ
Sbjct: 715 QGPQ 718
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALR--PAAGLRGRSGA 62
GLPG +G GP + + G P+G P P + P +RG G
Sbjct: 566 GLPGPEGPKGEPGIMGPFGMPGTSIPGPPG---PKGDRGGPGIPGFKGEPGLSIRGPKGV 622
Query: 63 QGPQRP 68
QGP+ P
Sbjct: 623 QGPRGP 628
Score = 28.9 bits (63), Expect = 0.94
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 5 GLPGS---VSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS- 60
GLPGS V G GP + P GE G P P AAG +G +
Sbjct: 475 GLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSI---GLPGQPGVPGEDGAAGKKGEAG 531
Query: 61 --GAQGPQRP 68
GA+GP+ P
Sbjct: 532 LPGARGPEGP 541
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG +GS GP+ R +G PP P + G +G G G
Sbjct: 301 GKPGIKGDKGSPGPYGPKGPRGI-----------QGITGPPGDPGPKGFQGNKGEPGPPG 349
Query: 65 PQRPRPAHYNSQEASRPDRRGATREG 90
P A Q+ + +R R G
Sbjct: 350 PYGSPGAPGIGQQGIKGERGQEGRPG 375
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 37.7 bits (86), Expect = 0.002
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L G PG RG D GP L GE+ PRG P P + G+RG G
Sbjct: 495 LPGPPGEDGERGDDGEIGPRGL-----PGESG---PRGLLGPKGPPGIPGPPGVRGMDGP 546
Query: 63 QGPQ 66
QGP+
Sbjct: 547 QGPK 550
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G RG + GP L+ P+GE +T G PP P R AG G G Q
Sbjct: 1052 GAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ 1111
Query: 64 GP 65
GP
Sbjct: 1112 GP 1113
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG+ + G GP + P G+ GS PP P G +G G G
Sbjct: 566 GTPGTQGLPGPQGAIGPHGEKG--PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG 623
Query: 65 PQRP 68
PQ P
Sbjct: 624 PQGP 627
Score = 33.9 bits (76), Expect = 0.029
Identities = 35/114 (30%), Positives = 40/114 (35%), Gaps = 19/114 (16%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGE------AQKTLPRGSASPPRSPALRPAA 54
G PG V +G+ GP R P GE A K +G PP +P A
Sbjct: 836 GPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA 895
Query: 55 GLRGRSGAQG-PQRPRPAHYNSQE--------ASRPDRRGATREGCVCGESRRP 99
GLRG G +G P E A P RGA G G RP
Sbjct: 896 GLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRP 949
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L GL G +G + P + P GE + RG P SP + G+ G SG
Sbjct: 1311 LPGLRGDAGAKGE--KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP 1368
Query: 63 QGPQRP 68
GP P
Sbjct: 1369 IGPGGP 1374
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPA-------GEAQKTLPRGSASPPRSPALRPAAGLR 57
G G V G + GP+ LR + G + P G PP P LR AG +
Sbjct: 1262 GKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAK 1321
Query: 58 GRSGAQG 64
G G G
Sbjct: 1322 GEKGHPG 1328
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G+PG VRG D GP+ P+G PP GL G GA G
Sbjct: 533 GIPGPPGVRGMDGPQGPKGSLG-----------PQGEPGPPGQQGTPGTQGLPGPQGAIG 581
Query: 65 P 65
P
Sbjct: 582 P 582
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
+ G PG+ +G+ +G P GE T PRG P + +G +G S
Sbjct: 727 LGFPGFPGASGEKGARGLSGKSG-----PRGERGPTGPRGQRGPRGATG---KSGAKGTS 778
Query: 61 GAQGPQRP 68
G GP P
Sbjct: 779 GGDGPHGP 786
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP--RGSASPPRSPALRPAAGLRG 58
+ L G PG +G GP+ +P + + +P G P P L AG +G
Sbjct: 1330 IGLIGPPGEQGEKGDRGLPGPQG----SPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1385
Query: 59 RSGAQGPQRPR 69
GA GP P+
Sbjct: 1386 AKGATGPGGPK 1396
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 5 GLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G + V+G G P S P G +T P G PP + G+ G G
Sbjct: 659 GFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 718
Query: 64 GPQRPR 69
G Q P+
Sbjct: 719 GRQGPK 724
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G G+ G D GP R P G P+G PP L G RG G
Sbjct: 769 TGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGF 828
Query: 63 QGPQRP 68
QG P
Sbjct: 829 QGKTGP 834
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PGS ++G GP+ R P+G PP AG RGR+GA G
Sbjct: 416 GQPGSPGLKGESGDLGPQGPRG-----------PQGLTGPPGK------AGRRGRAGADG 458
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 3 LSGLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
L G PG +GS G P + G + K+ PRG P R G G+SG
Sbjct: 714 LPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSG 773
Query: 62 AQGPQRPRPAHYNSQEASRPDRRG 85
A+G H E P +G
Sbjct: 774 AKGTSGGDGPHGPPGERGLPGPQG 797
Score = 29.3 bits (64), Expect = 0.72
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G GS RG+ GP P G P G+A P + G GR G QG
Sbjct: 926 GPAGSPGERGAAGSGGP-----IGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQG 980
Query: 65 P 65
P
Sbjct: 981 P 981
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG++ G + GP PAG A K P G P S + G G++G G
Sbjct: 1253 GDPGAIGAPG---KTGP-----VGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG 1304
Query: 65 PQRP 68
P P
Sbjct: 1305 PVGP 1308
Score = 28.9 bits (63), Expect = 0.94
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G PG + G + G L + P + P+GS P P G RG SG
Sbjct: 694 TGDPGPPGLMGEKGKLGVPGLPGY-PGRQG----PKGSLGFPGFPGASGEKGARGLSGKS 748
Query: 64 GPQRPR-PAHYNSQEASRPDRRGATREGCVCGES 96
GP+ R P Q RGAT + G S
Sbjct: 749 GPRGERGPTGPRGQRGP----RGATGKSGAKGTS 778
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/110 (26%), Positives = 34/110 (30%), Gaps = 29/110 (26%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAP---------------AGEAQKTL------------ 37
G PG + GSD GP P A EAQ
Sbjct: 343 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGP 402
Query: 38 --PRGSASPPRSPALRPAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
P G P + GL+G SG GPQ PR + + RRG
Sbjct: 403 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRG 452
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 4 SGLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G PGS +G G P ++ A G P G P L + G +GR GA
Sbjct: 1237 AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGA 1296
Query: 63 QGPQRP 68
G P
Sbjct: 1297 TGQAGP 1302
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTL----------PRGSASPPRSPALRPAA 54
G PG G D GP LR F T P G P SP R AA
Sbjct: 881 GDPGPPGAPGKD---GPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAA 937
Query: 55 GLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
G G G G P+ + E P +G
Sbjct: 938 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 968
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 1 MSLSGLPGSVSVRGSDRRAG----PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGL 56
+ L G G V G D G P GE P G P P AAG
Sbjct: 982 VGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPG---AAGA 1038
Query: 57 RGRSGAQGPQ 66
G GA+GPQ
Sbjct: 1039 DGEPGARGPQ 1048
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 5 GLPGSVSVRGSDRRAGPES-LRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G G+D GP + P GE + GS P ++ G RG G
Sbjct: 1097 GPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGES 1156
Query: 64 G-PQRPRP 70
G P P P
Sbjct: 1157 GQPGEPGP 1164
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG RG D G G+ P G PP R AG G G QG
Sbjct: 1190 GPPGEGGPRGQDGAKGDRG--EDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1247
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 37.7 bits (86), Expect = 0.002
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L G PG RG D GP L GE+ PRG P P + G+RG G
Sbjct: 474 LPGPPGEDGERGDDGEIGPRGL-----PGESG---PRGLLGPKGPPGIPGPPGVRGMDGP 525
Query: 63 QGPQ 66
QGP+
Sbjct: 526 QGPK 529
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G RG + GP L+ P+GE +T G PP P R AG G G Q
Sbjct: 1031 GAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ 1090
Query: 64 GP 65
GP
Sbjct: 1091 GP 1092
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG+ + G GP + P G+ GS PP P G +G G G
Sbjct: 545 GTPGTQGLPGPQGAIGPHGEKG--PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG 602
Query: 65 PQRP 68
PQ P
Sbjct: 603 PQGP 606
Score = 33.9 bits (76), Expect = 0.029
Identities = 35/114 (30%), Positives = 40/114 (35%), Gaps = 19/114 (16%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGE------AQKTLPRGSASPPRSPALRPAA 54
G PG V +G+ GP R P GE A K +G PP +P A
Sbjct: 815 GPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA 874
Query: 55 GLRGRSGAQG-PQRPRPAHYNSQE--------ASRPDRRGATREGCVCGESRRP 99
GLRG G +G P E A P RGA G G RP
Sbjct: 875 GLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRP 928
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L GL G +G + P + P GE + RG P SP + G+ G SG
Sbjct: 1290 LPGLRGDAGAKGE--KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP 1347
Query: 63 QGPQRP 68
GP P
Sbjct: 1348 IGPGGP 1353
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPA-------GEAQKTLPRGSASPPRSPALRPAAGLR 57
G G V G + GP+ LR + G + P G PP P LR AG +
Sbjct: 1241 GKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAK 1300
Query: 58 GRSGAQG 64
G G G
Sbjct: 1301 GEKGHPG 1307
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G+PG VRG D GP+ P+G PP GL G GA G
Sbjct: 512 GIPGPPGVRGMDGPQGPKGSLG-----------PQGEPGPPGQQGTPGTQGLPGPQGAIG 560
Query: 65 P 65
P
Sbjct: 561 P 561
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
+ G PG+ +G+ +G P GE T PRG P + +G +G S
Sbjct: 706 LGFPGFPGASGEKGARGLSGKSG-----PRGERGPTGPRGQRGPRGATG---KSGAKGTS 757
Query: 61 GAQGPQRP 68
G GP P
Sbjct: 758 GGDGPHGP 765
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP--RGSASPPRSPALRPAAGLRG 58
+ L G PG +G GP+ +P + + +P G P P L AG +G
Sbjct: 1309 IGLIGPPGEQGEKGDRGLPGPQG----SPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1364
Query: 59 RSGAQGPQRPR 69
GA GP P+
Sbjct: 1365 AKGATGPGGPK 1375
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 5 GLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G + V+G G P S P G +T P G PP + G+ G G
Sbjct: 638 GFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 697
Query: 64 GPQRPR 69
G Q P+
Sbjct: 698 GRQGPK 703
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G G+ G D GP R P G P+G PP L G RG G
Sbjct: 748 TGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGF 807
Query: 63 QGPQRP 68
QG P
Sbjct: 808 QGKTGP 813
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PGS ++G GP+ R P+G PP AG RGR+GA G
Sbjct: 395 GQPGSPGLKGESGDLGPQGPRG-----------PQGLTGPPGK------AGRRGRAGADG 437
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 3 LSGLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
L G PG +GS G P + G + K+ PRG P R G G+SG
Sbjct: 693 LPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSG 752
Query: 62 AQGPQRPRPAHYNSQEASRPDRRG 85
A+G H E P +G
Sbjct: 753 AKGTSGGDGPHGPPGERGLPGPQG 776
Score = 29.3 bits (64), Expect = 0.72
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G GS RG+ GP P G P G+A P + G GR G QG
Sbjct: 905 GPAGSPGERGAAGSGGP-----IGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQG 959
Query: 65 P 65
P
Sbjct: 960 P 960
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG++ G + GP PAG A K P G P S + G G++G G
Sbjct: 1232 GDPGAIGAPG---KTGP-----VGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG 1283
Query: 65 PQRP 68
P P
Sbjct: 1284 PVGP 1287
Score = 28.9 bits (63), Expect = 0.94
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G PG + G + G L + P + P+GS P P G RG SG
Sbjct: 673 TGDPGPPGLMGEKGKLGVPGLPGY-PGRQG----PKGSLGFPGFPGASGEKGARGLSGKS 727
Query: 64 GPQRPR-PAHYNSQEASRPDRRGATREGCVCGES 96
GP+ R P Q RGAT + G S
Sbjct: 728 GPRGERGPTGPRGQRGP----RGATGKSGAKGTS 757
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/110 (26%), Positives = 34/110 (30%), Gaps = 29/110 (26%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAP---------------AGEAQKTL------------ 37
G PG + GSD GP P A EAQ
Sbjct: 322 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGP 381
Query: 38 --PRGSASPPRSPALRPAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
P G P + GL+G SG GPQ PR + + RRG
Sbjct: 382 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRG 431
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 4 SGLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G PGS +G G P ++ A G P G P L + G +GR GA
Sbjct: 1216 AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGA 1275
Query: 63 QGPQRP 68
G P
Sbjct: 1276 TGQAGP 1281
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTL----------PRGSASPPRSPALRPAA 54
G PG G D GP LR F T P G P SP R AA
Sbjct: 860 GDPGPPGAPGKD---GPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAA 916
Query: 55 GLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
G G G G P+ + E P +G
Sbjct: 917 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 947
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 1 MSLSGLPGSVSVRGSDRRAG----PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGL 56
+ L G G V G D G P GE P G P P AAG
Sbjct: 961 VGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPG---AAGA 1017
Query: 57 RGRSGAQGPQ 66
G GA+GPQ
Sbjct: 1018 DGEPGARGPQ 1027
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 5 GLPGSVSVRGSDRRAGPES-LRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G G+D GP + P GE + GS P ++ G RG G
Sbjct: 1076 GPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGES 1135
Query: 64 G-PQRPRP 70
G P P P
Sbjct: 1136 GQPGEPGP 1143
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG RG D G G+ P G PP R AG G G QG
Sbjct: 1169 GPPGEGGPRGQDGAKGDRG--EDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1226
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 37.7 bits (86), Expect = 0.002
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L G PG RG D GP L GE+ PRG P P + G+RG G
Sbjct: 581 LPGPPGEDGERGDDGEIGPRGL-----PGESG---PRGLLGPKGPPGIPGPPGVRGMDGP 632
Query: 63 QGPQ 66
QGP+
Sbjct: 633 QGPK 636
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G RG + GP L+ P+GE +T G PP P R AG G G Q
Sbjct: 1138 GAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQ 1197
Query: 64 GP 65
GP
Sbjct: 1198 GP 1199
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG+ + G GP + P G+ GS PP P G +G G G
Sbjct: 652 GTPGTQGLPGPQGAIGPHGEKG--PQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG 709
Query: 65 PQRP 68
PQ P
Sbjct: 710 PQGP 713
Score = 33.9 bits (76), Expect = 0.029
Identities = 35/114 (30%), Positives = 40/114 (35%), Gaps = 19/114 (16%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGE------AQKTLPRGSASPPRSPALRPAA 54
G PG V +G+ GP R P GE A K +G PP +P A
Sbjct: 922 GPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA 981
Query: 55 GLRGRSGAQG-PQRPRPAHYNSQE--------ASRPDRRGATREGCVCGESRRP 99
GLRG G +G P E A P RGA G G RP
Sbjct: 982 GLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRP 1035
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L GL G +G + P + P GE + RG P SP + G+ G SG
Sbjct: 1397 LPGLRGDAGAKGE--KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGP 1454
Query: 63 QGPQRP 68
GP P
Sbjct: 1455 IGPGGP 1460
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPA-------GEAQKTLPRGSASPPRSPALRPAAGLR 57
G G V G + GP+ LR + G + P G PP P LR AG +
Sbjct: 1348 GKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAK 1407
Query: 58 GRSGAQG 64
G G G
Sbjct: 1408 GEKGHPG 1414
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G+PG VRG D GP+ P+G PP GL G GA G
Sbjct: 619 GIPGPPGVRGMDGPQGPKGSLG-----------PQGEPGPPGQQGTPGTQGLPGPQGAIG 667
Query: 65 P 65
P
Sbjct: 668 P 668
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
+ G PG+ +G+ +G P GE T PRG P + +G +G S
Sbjct: 813 LGFPGFPGASGEKGARGLSGKSG-----PRGERGPTGPRGQRGPRGATG---KSGAKGTS 864
Query: 61 GAQGPQRP 68
G GP P
Sbjct: 865 GGDGPHGP 872
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP--RGSASPPRSPALRPAAGLRG 58
+ L G PG +G GP+ +P + + +P G P P L AG +G
Sbjct: 1416 IGLIGPPGEQGEKGDRGLPGPQG----SPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1471
Query: 59 RSGAQGPQRPR 69
GA GP P+
Sbjct: 1472 AKGATGPGGPK 1482
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 5 GLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G + V+G G P S P G +T P G PP + G+ G G
Sbjct: 745 GFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 804
Query: 64 GPQRPR 69
G Q P+
Sbjct: 805 GRQGPK 810
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G G+ G D GP R P G P+G PP L G RG G
Sbjct: 855 TGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGF 914
Query: 63 QGPQRP 68
QG P
Sbjct: 915 QGKTGP 920
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PGS ++G GP+ R P+G PP AG RGR+GA G
Sbjct: 502 GQPGSPGLKGESGDLGPQGPRG-----------PQGLTGPPGK------AGRRGRAGADG 544
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 3 LSGLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
L G PG +GS G P + G + K+ PRG P R G G+SG
Sbjct: 800 LPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSG 859
Query: 62 AQGPQRPRPAHYNSQEASRPDRRG 85
A+G H E P +G
Sbjct: 860 AKGTSGGDGPHGPPGERGLPGPQG 883
Score = 29.3 bits (64), Expect = 0.72
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G GS RG+ GP P G P G+A P + G GR G QG
Sbjct: 1012 GPAGSPGERGAAGSGGP-----IGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQG 1066
Query: 65 P 65
P
Sbjct: 1067 P 1067
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG++ G + GP PAG A K P G P S + G G++G G
Sbjct: 1339 GDPGAIGAPG---KTGP-----VGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG 1390
Query: 65 PQRP 68
P P
Sbjct: 1391 PVGP 1394
Score = 28.9 bits (63), Expect = 0.94
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G PG + G + G L + P + P+GS P P G RG SG
Sbjct: 780 TGDPGPPGLMGEKGKLGVPGLPGY-PGRQG----PKGSLGFPGFPGASGEKGARGLSGKS 834
Query: 64 GPQRPR-PAHYNSQEASRPDRRGATREGCVCGES 96
GP+ R P Q RGAT + G S
Sbjct: 835 GPRGERGPTGPRGQRGP----RGATGKSGAKGTS 864
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/110 (26%), Positives = 34/110 (30%), Gaps = 29/110 (26%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAP---------------AGEAQKTL------------ 37
G PG + GSD GP P A EAQ
Sbjct: 429 GPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGP 488
Query: 38 --PRGSASPPRSPALRPAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
P G P + GL+G SG GPQ PR + + RRG
Sbjct: 489 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRG 538
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 4 SGLPGSVSVRGSDRRAG-PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G PGS +G G P ++ A G P G P L + G +GR GA
Sbjct: 1323 AGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGA 1382
Query: 63 QGPQRP 68
G P
Sbjct: 1383 TGQAGP 1388
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTL----------PRGSASPPRSPALRPAA 54
G PG G D GP LR F T P G P SP R AA
Sbjct: 967 GDPGPPGAPGKD---GPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAA 1023
Query: 55 GLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
G G G G P+ + E P +G
Sbjct: 1024 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG 1054
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 1 MSLSGLPGSVSVRGSDRRAG----PESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGL 56
+ L G G V G D G P GE P G P P AAG
Sbjct: 1068 VGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPG---AAGA 1124
Query: 57 RGRSGAQGPQ 66
G GA+GPQ
Sbjct: 1125 DGEPGARGPQ 1134
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 5 GLPGSVSVRGSDRRAGPES-LRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G G G+D GP + P GE + GS P ++ G RG G
Sbjct: 1183 GPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGES 1242
Query: 64 G-PQRPRP 70
G P P P
Sbjct: 1243 GQPGEPGP 1250
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG RG D G G+ P G PP R AG G G QG
Sbjct: 1276 GPPGEGGPRGQDGAKGDRG--EDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1333
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLR-AFAPAGEAQKTL---------PRGSASPPRSPALRPAA 54
GLPG RG GP+ + A GEA + P+GSA P P LR
Sbjct: 658 GLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPE 717
Query: 55 GLRGRSGAQGPQRP 68
G RG G +GP+ P
Sbjct: 718 GSRGLPGVEGPRGP 731
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/64 (31%), Positives = 23/64 (35%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PGS+ +G G R F G P G+A P G GR G G
Sbjct: 332 GSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPG 391
Query: 65 PQRP 68
P P
Sbjct: 392 PPGP 395
Score = 26.9 bits (58), Expect = 3.6
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG +GS G LR P G G PP ++ G G G QG
Sbjct: 697 GLPGP---KGSAGNPGEPGLRG--PEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQG 751
Query: 65 PQRPRP 70
P P
Sbjct: 752 PPGRAP 757
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRA----FAPAGEAQKTLPRGSASPPRSPALRPAAGL 56
M SG PG G GP+ L P G GS P P L GL
Sbjct: 600 MGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGL 659
Query: 57 RGRSGAQG 64
G G +G
Sbjct: 660 PGMKGDRG 667
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 29 PAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
P+ + P G PP P G+ G G +GP+ P + E +P G
Sbjct: 261 PSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPG 317
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L G PG RG AGP+ R A LP G P + G+ G G
Sbjct: 497 LPGAPGDQGQRGPPGEAGPKGDRG-AEGARGIPGLP-GPKGDTGLPGVDGRDGIPGMPGT 554
Query: 63 QG-PQRPRP 70
+G P +P P
Sbjct: 555 KGEPGKPGP 563
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLR-AFAPAGEAQKTL---------PRGSASPPRSPALRPAA 54
GLPG RG GP+ + A GEA + P+GSA P P LR
Sbjct: 415 GLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPE 474
Query: 55 GLRGRSGAQGPQRP 68
G RG G +GP+ P
Sbjct: 475 GSRGLPGVEGPRGP 488
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/64 (31%), Positives = 23/64 (35%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PGS+ +G G R F G P G+A P G GR G G
Sbjct: 89 GSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPG 148
Query: 65 PQRP 68
P P
Sbjct: 149 PPGP 152
Score = 26.9 bits (58), Expect = 3.6
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG +GS G LR P G G PP ++ G G G QG
Sbjct: 454 GLPGP---KGSAGNPGEPGLRG--PEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQG 508
Query: 65 PQRPRP 70
P P
Sbjct: 509 PPGRAP 514
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRA----FAPAGEAQKTLPRGSASPPRSPALRPAAGL 56
M SG PG G GP+ L P G GS P P L GL
Sbjct: 357 MGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGL 416
Query: 57 RGRSGAQG 64
G G +G
Sbjct: 417 PGMKGDRG 424
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L G PG RG AGP+ R A LP G P + G+ G G
Sbjct: 254 LPGAPGDQGQRGPPGEAGPKGDRG-AEGARGIPGLP-GPKGDTGLPGVDGRDGIPGMPGT 311
Query: 63 QG-PQRPRP 70
+G P +P P
Sbjct: 312 KGEPGKPGP 320
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 38 PRGSASPPRSPALRPAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
P G PP P G+ G G +GP+ P + E +P G
Sbjct: 27 PPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPG 74
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG+ G D AGP+ P+G A G P P L A GL GR G
Sbjct: 510 GAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 569
Query: 64 GPQ 66
GPQ
Sbjct: 570 GPQ 572
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG+ RG GP L PAGE + G+ PP G RG +GA G
Sbjct: 1008 GAPGASGDRGPPGPVGPPGLTG--PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVG 1065
Query: 65 -------PQRPRPAHYNSQEASR 80
P P PA ++ R
Sbjct: 1066 APGAPGPPGSPGPAGPTGKQGDR 1088
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G G+ RG+D + GP AG P G P +P + AG G G +
Sbjct: 335 TGPAGAAGARGNDGQPGP--------AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 386
Query: 64 GPQRPR 69
G Q PR
Sbjct: 387 GAQGPR 392
Score = 33.1 bits (74), Expect = 0.050
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 24/98 (24%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAA-----GLRGR 59
G PG+ G D AG + R GE G+ PP SP PA G RG
Sbjct: 1038 GSPGADGPPGRDGAAGVKGDR-----GETGAVGAPGAPGPPGSPG--PAGPTGKQGDRGE 1090
Query: 60 SGAQGP------------QRPRPAHYNSQEASRPDRRG 85
+GAQGP Q P+ + EA P RG
Sbjct: 1091 AGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERG 1128
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G PG +G+ G + P G PRG PP P AG G++G +
Sbjct: 215 AGAPGPQGFQGNPGEPGEPGVSG--PMG------PRGPPGPPGKPGDDGEAGKPGKAGER 266
Query: 64 GPQRPRPA 71
GP P+ A
Sbjct: 267 GPPGPQGA 274
Score = 32.3 bits (72), Expect = 0.085
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG G+ R P P G A P G+ P + + AG +G +GA G
Sbjct: 807 GPPGPAGSAGA--RGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 864
Query: 65 PQRPRPA 71
PQ P A
Sbjct: 865 PQGPSGA 871
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFA-PAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G PG G + GP+ R + P G A + +G A PP + G G SGA
Sbjct: 911 NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE---KGEPGDDGPSGA 967
Query: 63 QGPQRPRPAHYNSQEASRPDRRG 85
+GP P+ P +RG
Sbjct: 968 EGPPGPQGLAGQRGIVGLPGQRG 990
Score = 30.8 bits (68), Expect = 0.25
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
L G PG +G+ AGP R P G + K G P P G RGRSG
Sbjct: 1141 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPP------GPRGRSG 1194
Query: 62 AQGPQRP 68
GP P
Sbjct: 1195 ETGPAGP 1201
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
M G PG G D AG AGE P+G+ P +P L G RG
Sbjct: 239 MGPRGPPGPPGKPGDDGEAGKPG-----KAGERGPPGPQGARGFPGTPGLPGVKGHRGYP 293
Query: 61 GAQGPQRPRPAHYNSQEASRPDRRGA 86
G G + A E+ P G+
Sbjct: 294 GLDGAKGEAGAPGVKGESGSPGENGS 319
Score = 29.3 bits (64), Expect = 0.72
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF-------APAGEAQKTLPRGSASPPRSPALRPAAGL 56
SG PG+ + G+ AG + P G T P G P + G
Sbjct: 407 SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGE 466
Query: 57 RGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
+G G GP P+ A + E + RG
Sbjct: 467 QGPKGEPGPAGPQGAPGPAGEEGKRGARG 495
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG +G+ R P + P G + G P +P LR G G +GA G
Sbjct: 585 GRPGPPGPQGA--RGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 642
Query: 65 PQRP 68
P P
Sbjct: 643 PPGP 646
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
G PG G+ GP L P G + P G+ PP L+ G RG +
Sbjct: 702 GFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP---GLQGMPGERGAA 758
Query: 61 GAQGPQRPR 69
G GP+ R
Sbjct: 759 GIAGPKGDR 767
Score = 28.9 bits (63), Expect = 0.94
Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRA----------FAPAGEAQKTLPRGSASPPRSPALRPA 53
+G+ G RG GPE P G A +G PP A
Sbjct: 758 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 817
Query: 54 AGLRGRSGAQGPQRPRPAHYNSQEAS--RPDRRGATREGCVCGESRRP 99
G G G GP P PA + + +P +G E G++ P
Sbjct: 818 RGAPGERGETGP--PGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAP 863
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-----APAGEAQKTLPRGSASPPRSPALRPAAGLRGR 59
G+PG G GP R F +P + + PRG P + + A+G G
Sbjct: 684 GVPGEAGAPGL---VGPRGERGFPGERGSPGAQGLQG-PRGLPGTPGTDGPKGASGPAGP 739
Query: 60 SGAQGP 65
GAQGP
Sbjct: 740 PGAQGP 745
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLR-AFAPAGEAQKTLP---RGSASPPRSPALRPAAGLRGRS 60
G G +G GP+ A P G T P RG+ PP + AAG G
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 908
Query: 61 GAQG----PQRPRPAHYNSQEASRPDRRGATREG 90
G+ G P P P+ + + +R D R G
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAG 942
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/84 (28%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 5 GLPGSVSVRGS-DRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG G R P + P GE RG + A G RG SG
Sbjct: 480 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA 539
Query: 64 GPQRPRPAHYNSQEASRPDRRGAT 87
GP+ E P RG T
Sbjct: 540 GPKGANGDPGRPGEPGLPGARGLT 563
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 5 GLPGSVSVR---GSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
GL G+ + + G D +AG L P G P G A P + G G
Sbjct: 174 GLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 233
Query: 61 GAQGPQRPR 69
G GP PR
Sbjct: 234 GVSGPMGPR 242
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG+ + G AGP+ K P G+ P G RG+ G G
Sbjct: 555 GLPGARGLTGRPGDAGPQG-----------KVGPSGAPGEDGRPGPPGPQGARGQPGVMG 603
Query: 65 PQRPRPAHYNSQEASRPDRRGA 86
P+ A+ +A GA
Sbjct: 604 FPGPKGANGEPGKAGEKGLPGA 625
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
G PG+ G+ R GP P G + K P+G+ P GL+G +
Sbjct: 891 GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 950
Query: 61 GAQG 64
G G
Sbjct: 951 GPPG 954
Score = 26.9 bits (58), Expect = 3.6
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPA--------GEAQKTLPRGSASPPRSPALRPAAGL 56
G PG G +AG + L AP GE P G A P + A G
Sbjct: 603 GFPGPKGANGEPGKAGEKGLPG-APGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP 661
Query: 57 RGRSGAQGPQRP 68
G G GP P
Sbjct: 662 SGFQGLPGPPGP 673
Score = 26.2 bits (56), Expect = 6.1
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
G G+ G + G + F P GE P+G+ P R A G G
Sbjct: 441 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 500
Query: 61 GAQGPQRPRPAHYN 74
G GP R A N
Sbjct: 501 GPIGPPGERGAPGN 514
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G G +G AG + G+A P+G + P G +G GAQG
Sbjct: 840 GADGQPGAKGEQGEAGQK--------GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQG 891
Query: 65 P 65
P
Sbjct: 892 P 892
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 14/83 (16%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L GLPG G +GP P G PP G G G
Sbjct: 1138 LQGLPGPPGPSGDQGASGPAG--------------PSGPRGPPGPVGPSGKDGANGIPGP 1183
Query: 63 QGPQRPRPAHYNSQEASRPDRRG 85
GP PR + A P G
Sbjct: 1184 IGPPGPRGRSGETGPAGPPGNPG 1206
Score = 25.8 bits (55), Expect = 7.9
Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 4 SGLPGSVSVRGSDRRAGPESLR-AFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
SG PG +G GP+ R A P G G PP S G G SG
Sbjct: 869 SGAPGP---QGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 925
Query: 63 QGPQRPRPAHYNSQEASRPDRRG 85
GP+ R A P +G
Sbjct: 926 DGPKGARGDSGPPGRAGEPGLQG 948
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G PG ++G G + L P+G+ + P G + P P +G G +G
Sbjct: 1121 AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGI 1180
Query: 63 QGPQRP 68
GP P
Sbjct: 1181 PGPIGP 1186
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG+ G D AGP+ P+G A G P P L A GL GR G
Sbjct: 441 GAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 500
Query: 64 GPQ 66
GPQ
Sbjct: 501 GPQ 503
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG+ RG GP L PAGE + G+ PP G RG +GA G
Sbjct: 939 GAPGASGDRGPPGPVGPPGLTG--PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVG 996
Query: 65 -------PQRPRPAHYNSQEASR 80
P P PA ++ R
Sbjct: 997 APGAPGPPGSPGPAGPTGKQGDR 1019
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G G+ RG+D + GP AG P G P +P + AG G G +
Sbjct: 266 TGPAGAAGARGNDGQPGP--------AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 317
Query: 64 GPQRPR 69
G Q PR
Sbjct: 318 GAQGPR 323
Score = 33.1 bits (74), Expect = 0.050
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 24/98 (24%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAA-----GLRGR 59
G PG+ G D AG + R GE G+ PP SP PA G RG
Sbjct: 969 GSPGADGPPGRDGAAGVKGDR-----GETGAVGAPGAPGPPGSPG--PAGPTGKQGDRGE 1021
Query: 60 SGAQGP------------QRPRPAHYNSQEASRPDRRG 85
+GAQGP Q P+ + EA P RG
Sbjct: 1022 AGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERG 1059
Score = 32.3 bits (72), Expect = 0.085
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
+G PG +G+ G + P G PRG PP P AG G++G +
Sbjct: 146 AGAPGPQGFQGNPGEPGEPGVSG--PMG------PRGPPGPPGKPGDDGEAGKPGKAGER 197
Query: 64 GPQRPRPA 71
GP P+ A
Sbjct: 198 GPPGPQGA 205
Score = 32.3 bits (72), Expect = 0.085
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG G+ R P P G A P G+ P + + AG +G +GA G
Sbjct: 738 GPPGPAGSAGA--RGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 795
Query: 65 PQRPRPA 71
PQ P A
Sbjct: 796 PQGPSGA 802
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFA-PAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G PG G + GP+ R + P G A + +G A PP + G G SGA
Sbjct: 842 NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE---KGEPGDDGPSGA 898
Query: 63 QGPQRPRPAHYNSQEASRPDRRG 85
+GP P+ P +RG
Sbjct: 899 EGPPGPQGLAGQRGIVGLPGQRG 921
Score = 30.8 bits (68), Expect = 0.25
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
L G PG +G+ AGP R P G + K G P P G RGRSG
Sbjct: 1072 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPP------GPRGRSG 1125
Query: 62 AQGPQRP 68
GP P
Sbjct: 1126 ETGPAGP 1132
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 1 MSLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
M G PG G D AG AGE P+G+ P +P L G RG
Sbjct: 170 MGPRGPPGPPGKPGDDGEAGKPG-----KAGERGPPGPQGARGFPGTPGLPGVKGHRGYP 224
Query: 61 GAQGPQRPRPAHYNSQEASRPDRRGA 86
G G + A E+ P G+
Sbjct: 225 GLDGAKGEAGAPGVKGESGSPGENGS 250
Score = 29.3 bits (64), Expect = 0.72
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF-------APAGEAQKTLPRGSASPPRSPALRPAAGL 56
SG PG+ + G+ AG + P G T P G P + G
Sbjct: 338 SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGE 397
Query: 57 RGRSGAQGPQRPRPAHYNSQEASRPDRRG 85
+G G GP P+ A + E + RG
Sbjct: 398 QGPKGEPGPAGPQGAPGPAGEEGKRGARG 426
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G PG +G+ R P + P G + G P +P LR G G +GA G
Sbjct: 516 GRPGPPGPQGA--RGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 573
Query: 65 PQRP 68
P P
Sbjct: 574 PPGP 577
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
G PG G+ GP L P G + P G+ PP L+ G RG +
Sbjct: 633 GFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP---GLQGMPGERGAA 689
Query: 61 GAQGPQRPR 69
G GP+ R
Sbjct: 690 GIAGPKGDR 698
Score = 28.9 bits (63), Expect = 0.94
Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRA----------FAPAGEAQKTLPRGSASPPRSPALRPA 53
+G+ G RG GPE P G A +G PP A
Sbjct: 689 AGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 748
Query: 54 AGLRGRSGAQGPQRPRPAHYNSQEAS--RPDRRGATREGCVCGESRRP 99
G G G GP P PA + + +P +G E G++ P
Sbjct: 749 RGAPGERGETGP--PGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAP 794
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-----APAGEAQKTLPRGSASPPRSPALRPAAGLRGR 59
G+PG G GP R F +P + + PRG P + + A+G G
Sbjct: 615 GVPGEAGAPGL---VGPRGERGFPGERGSPGAQGLQG-PRGLPGTPGTDGPKGASGPAGP 670
Query: 60 SGAQGP 65
GAQGP
Sbjct: 671 PGAQGP 676
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 5 GLPGSVSVRGSDRRAGPESLR-AFAPAGEAQKTLP---RGSASPPRSPALRPAAGLRGRS 60
G G +G GP+ A P G T P RG+ PP + AAG G
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 839
Query: 61 GAQG----PQRPRPAHYNSQEASRPDRRGATREG 90
G+ G P P P+ + + +R D R G
Sbjct: 840 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAG 873
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/84 (28%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 5 GLPGSVSVRGS-DRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG G R P + P GE RG + A G RG SG
Sbjct: 411 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA 470
Query: 64 GPQRPRPAHYNSQEASRPDRRGAT 87
GP+ E P RG T
Sbjct: 471 GPKGANGDPGRPGEPGLPGARGLT 494
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 5 GLPGSVSVR---GSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
GL G+ + + G D +AG L P G P G A P + G G
Sbjct: 105 GLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 164
Query: 61 GAQGPQRPR 69
G GP PR
Sbjct: 165 GVSGPMGPR 173
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
GLPG+ + G AGP+ K P G+ P G RG+ G G
Sbjct: 486 GLPGARGLTGRPGDAGPQG-----------KVGPSGAPGEDGRPGPPGPQGARGQPGVMG 534
Query: 65 PQRPRPAHYNSQEASRPDRRGA 86
P+ A+ +A GA
Sbjct: 535 FPGPKGANGEPGKAGEKGLPGA 556
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
G PG+ G+ R GP P G + K P+G+ P GL+G +
Sbjct: 822 GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 881
Query: 61 GAQG 64
G G
Sbjct: 882 GPPG 885
Score = 26.9 bits (58), Expect = 3.6
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPA--------GEAQKTLPRGSASPPRSPALRPAAGL 56
G PG G +AG + L AP GE P G A P + A G
Sbjct: 534 GFPGPKGANGEPGKAGEKGLPG-APGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP 592
Query: 57 RGRSGAQGPQRP 68
G G GP P
Sbjct: 593 SGFQGLPGPPGP 604
Score = 26.2 bits (56), Expect = 6.1
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF----APAGEAQKTLPRGSASPPRSPALRPAAGLRGRS 60
G G+ G + G + F P GE P+G+ P R A G G
Sbjct: 372 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 431
Query: 61 GAQGPQRPRPAHYN 74
G GP R A N
Sbjct: 432 GPIGPPGERGAPGN 445
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQG 64
G G +G AG + G+A P+G + P G +G GAQG
Sbjct: 771 GADGQPGAKGEQGEAGQK--------GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQG 822
Query: 65 P 65
P
Sbjct: 823 P 823
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 14/83 (16%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L GLPG G +GP P G PP G G G
Sbjct: 1069 LQGLPGPPGPSGDQGASGPAG--------------PSGPRGPPGPVGPSGKDGANGIPGP 1114
Query: 63 QGPQRPRPAHYNSQEASRPDRRG 85
GP PR + A P G
Sbjct: 1115 IGPPGPRGRSGETGPAGPPGNPG 1137
Score = 25.8 bits (55), Expect = 7.9
Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 4 SGLPGSVSVRGSDRRAGPESLR-AFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
SG PG +G GP+ R A P G G PP S G G SG
Sbjct: 800 SGAPGP---QGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK 856
Query: 63 QGPQRPRPAHYNSQEASRPDRRG 85
GP+ R A P +G
Sbjct: 857 DGPKGARGDSGPPGRAGEPGLQG 879
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
+G PG ++G G + L P+G+ + P G + P P +G G +G
Sbjct: 1052 AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGI 1111
Query: 63 QGPQRP 68
GP P
Sbjct: 1112 PGPIGP 1117
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 14 GSDRRAGPESLRAFAPAGEAQKTLPRGSAS------PPRSPALRPAAGLRGRSGAQGPQR 67
GS A +P G ++ PR S + PP PAL P+A R R Q
Sbjct: 238 GSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSA--RRRCRVNWNQS 295
Query: 68 PRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGSGCA 106
RPA +N+Q A+R G +RRP G A
Sbjct: 296 SRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPA 334
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 37.4 bits (85), Expect = 0.003
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 27/98 (27%)
Query: 6 LPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQGP 65
LP S +GS R+G R + P G ASPP SP RP +GP
Sbjct: 18 LPASAGAQGSQARSGLRLCRT-------TQGRPAGGASPPPSPRSRP----------EGP 60
Query: 66 QRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGS 103
PRPA + A RP +G G S PA S
Sbjct: 61 GPPRPA---TPSARRP-------QGLSAGVSAGPAQRS 88
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 21 PESLRAFAPAGEAQKTLPRGSASP-PRSPALRPAAGLRGRSGAQGPQRP 68
P+ L A AG AQ++ P A P R+PA A R A+GP P
Sbjct: 73 PQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRMGRAARGPPAP 121
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 21 PESLRAFAPAGEAQKTLPRGSASP-----PRSPALRPAA-----GLRGRSGAQGPQRPRP 70
P +F ++Q LP+ +A+P P +P RP A G RGR+ ++G +P
Sbjct: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQP 243
Query: 71 AHY------NSQEASRPDRRGATREGCVCGESRRP-----AHGSGCA 106
AH +S P+ R G G RP A SGCA
Sbjct: 244 AHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCA 290
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 16 DRRAGPESL---RAFAPAGEAQKTLPRGSASP-PRSPALRPAAGLRGRS-GAQGPQRPRP 70
+ R GP R PA A LP + SP P +P LR GR+ G+ +RPRP
Sbjct: 224 ESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELR-----EGRAPGSTAGRRPRP 278
Query: 71 AHYNSQEASRPDRRGATREGCVCGESRRPAHGSG 104
+ E S G R C S +P SG
Sbjct: 279 REPQAAEESGCATVGLRRGDCDRAGSSQPPATSG 312
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 14 GSDRRAGPESLRAFAPAGEAQKTLPRGSAS------PPRSPALRPAAGLRGRSGAQGPQR 67
GS A +P G ++ PR S + PP PAL P+A R R Q
Sbjct: 238 GSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSA--RRRCRVNWNQS 295
Query: 68 PRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGSGCA 106
RPA +N+Q A+R G +RRP G A
Sbjct: 296 SRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPA 334
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 37.4 bits (85), Expect = 0.003
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 27/98 (27%)
Query: 6 LPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQGP 65
LP S +GS R+G R + P G ASPP SP RP +GP
Sbjct: 18 LPASAGAQGSQARSGLRLCRT-------TQGRPAGGASPPPSPRSRP----------EGP 60
Query: 66 QRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGS 103
PRPA + A RP +G G S PA S
Sbjct: 61 GPPRPA---TPSARRP-------QGLSAGVSAGPAQRS 88
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 21 PESLRAFAPAGEAQKTLPRGSASP-PRSPALRPAAGLRGRSGAQGPQRP 68
P+ L A AG AQ++ P A P R+PA A R A+GP P
Sbjct: 73 PQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRMGRAARGPPAP 121
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 21 PESLRAFAPAGEAQKTLPRGSASP-----PRSPALRPAA-----GLRGRSGAQGPQRPRP 70
P +F ++Q LP+ +A+P P +P RP A G RGR+ ++G +P
Sbjct: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQP 243
Query: 71 AHY------NSQEASRPDRRGATREGCVCGESRRP-----AHGSGCA 106
AH +S P+ R G G RP A SGCA
Sbjct: 244 AHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCA 290
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 16 DRRAGPESL---RAFAPAGEAQKTLPRGSASP-PRSPALRPAAGLRGRS-GAQGPQRPRP 70
+ R GP R PA A LP + SP P +P LR GR+ G+ +RPRP
Sbjct: 224 ESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELR-----EGRAPGSTAGRRPRP 278
Query: 71 AHYNSQEASRPDRRGATREGCVCGESRRPAHGSG 104
+ E S G R C S +P SG
Sbjct: 279 REPQAAEESGCATVGLRRGDCDRAGSSQPPATSG 312
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 14 GSDRRAGPESLRAFAPAGEAQKTLPRGSAS------PPRSPALRPAAGLRGRSGAQGPQR 67
GS A +P G ++ PR S + PP PAL P+A R R Q
Sbjct: 238 GSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSA--RRRCRVNWNQS 295
Query: 68 PRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGSGCA 106
RPA +N+Q A+R G +RRP G A
Sbjct: 296 SRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPA 334
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 21 PESLRAFAPAGEAQKTLPRGSASP-----PRSPALRPAA-----GLRGRSGAQGPQRPRP 70
P +F ++Q LP+ +A+P P +P RP A G RGR+ ++G +P
Sbjct: 184 PRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQP 243
Query: 71 AHY------NSQEASRPDRRGATREGCVCGESRRP-----AHGSGCA 106
AH +S P+ R G G RP A SGCA
Sbjct: 244 AHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCA 290
Score = 31.2 bits (69), Expect = 0.19
Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 16 DRRAGPESL---RAFAPAGEAQKTLPRGSASP-PRSPALRPAAGLRGRS-GAQGPQRPRP 70
+ R GP R PA A LP + SP P +P LR GR+ G+ +RPRP
Sbjct: 224 ESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELR-----EGRAPGSTAGRRPRP 278
Query: 71 AHYNSQEASRPDRRGATREGCVCGESRRPAHGSG 104
+ E S G R C S +P SG
Sbjct: 279 REPQAAEESGCATVGLRRGDCDRAGSSQPPATSG 312
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
SG+PGS G GP P Q + +G A PP P GL+G G Q
Sbjct: 1344 SGVPGSAGPEGEPGLIGPPGPPGL-PGPSGQSIIIKGDAGPPGIPG---QPGLKGLPGPQ 1399
Query: 64 GPQ 66
GPQ
Sbjct: 1400 GPQ 1402
Score = 33.1 bits (74), Expect = 0.050
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
+ G PG+ G GP F P GE LP G PP P + A G +G G
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALP-GPPGPPGLPGFKGALGPKGDRG 778
Query: 62 AQGPQRP 68
GP P
Sbjct: 779 FPGPPGP 785
Score = 30.8 bits (68), Expect = 0.25
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGE-AQKTLPR--GSASPPRSPALRPAAGLRGRSG 61
G PG + G GP L P GE +P G PP SP L AG G G
Sbjct: 834 GQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPG 893
Query: 62 AQG 64
+G
Sbjct: 894 TKG 896
Score = 29.6 bits (65), Expect = 0.55
Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP-----------RGSASPPRSPALR 51
L G PG+ ++GS G L P + Q LP +G + PP +P L
Sbjct: 1087 LPGYPGNPGIKGSVGDPGLPGLPG-TPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLP 1145
Query: 52 PAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGS 103
G G G G P E +P + G GE +P G+
Sbjct: 1146 GEPGPVGGGGHPGQPGP------PGEKGKPGQDGIPGPAGQKGEPGQPGFGN 1191
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG+ + G G + L P GE +G PP +P L GL G G
Sbjct: 564 GSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGL---PGLPGNIGPM 620
Query: 64 GP 65
GP
Sbjct: 621 GP 622
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
+ G PG + GS G F GE P G P P GL+G G
Sbjct: 867 IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDG 926
Query: 62 AQG-PQRPRP 70
QG P P P
Sbjct: 927 LQGQPGLPGP 936
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 2 SLSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP-----RGSASPPRSPALRPAAGL 56
+L G G+ +G R GP + P E LP +G P P L GL
Sbjct: 1246 ALEGPKGNPGPQGPPGRPGPTGFQGL-PGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGL 1304
Query: 57 RGRSGAQGPQ 66
+G G G Q
Sbjct: 1305 KGDQGPPGLQ 1314
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L G PG + GS G + P G P+G P P A G GR G
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPPG------PKGFPGIPGPPG---APGTPGRIGL 735
Query: 63 QGPQRP 68
+GP P
Sbjct: 736 EGPPGP 741
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGL---RGR 59
L G PG G + GP + G P+G PP P GL G
Sbjct: 55 LEGHPGLPGFPGPEGPPGPRGQKG--DDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGH 112
Query: 60 SGAQGPQ 66
GA GPQ
Sbjct: 113 DGAPGPQ 119
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFA--PAGEAQKTLP--RGSASPPRSPALRPAAGLRGRS 60
G PGS G GP + P +LP +G+ P P ++ G G
Sbjct: 132 GFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIP 191
Query: 61 GAQGPQRP 68
G GP P
Sbjct: 192 GPIGPPGP 199
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 3 LSGLPGSVSVRGSDRRAG----PESLRAFAPAGEAQKTL--PRGSASPPRSPALRPAAGL 56
L G+PG+ + G G P P G L P+G+ P P G
Sbjct: 1209 LPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGF 1268
Query: 57 RGRSGAQGP 65
+G G +GP
Sbjct: 1269 QGLPGPEGP 1277
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
SG+PGS G GP P Q + +G A PP P GL+G G Q
Sbjct: 1338 SGVPGSAGPEGEPGLIGPPGPPGL-PGPSGQSIIIKGDAGPPGIPG---QPGLKGLPGPQ 1393
Query: 64 GPQ 66
GPQ
Sbjct: 1394 GPQ 1396
Score = 33.1 bits (74), Expect = 0.050
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
+ G PG+ G GP F P GE LP G PP P + A G +G G
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALP-GPPGPPGLPGFKGALGPKGDRG 778
Query: 62 AQGPQRP 68
GP P
Sbjct: 779 FPGPPGP 785
Score = 30.8 bits (68), Expect = 0.25
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGE-AQKTLPR--GSASPPRSPALRPAAGLRGRSG 61
G PG + G GP L P GE +P G PP SP L AG G G
Sbjct: 834 GQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPG 893
Query: 62 AQG 64
+G
Sbjct: 894 TKG 896
Score = 29.6 bits (65), Expect = 0.55
Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP-----------RGSASPPRSPALR 51
L G PG+ ++GS G L P + Q LP +G + PP +P L
Sbjct: 1087 LPGYPGNPGIKGSVGDPGLPGLPG-TPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLP 1145
Query: 52 PAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGS 103
G G G G P E +P + G GE +P G+
Sbjct: 1146 GEPGPVGGGGHPGQPGP------PGEKGKPGQDGIPGPAGQKGEPGQPGFGN 1191
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG+ + G G + L P GE +G PP +P L GL G G
Sbjct: 564 GSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGL---PGLPGNIGPM 620
Query: 64 GP 65
GP
Sbjct: 621 GP 622
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
+ G PG + GS G F GE P G P P GL+G G
Sbjct: 867 IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDG 926
Query: 62 AQG-PQRPRP 70
QG P P P
Sbjct: 927 LQGQPGLPGP 936
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L G PG + GS G + P G P+G P P A G GR G
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPPG------PKGFPGIPGPPG---APGTPGRIGL 735
Query: 63 QGPQRP 68
+GP P
Sbjct: 736 EGPPGP 741
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGL---RGR 59
L G PG G + GP + G P+G PP P GL G
Sbjct: 55 LEGHPGLPGFPGPEGPPGPRGQKG--DDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGH 112
Query: 60 SGAQGPQ 66
GA GPQ
Sbjct: 113 DGAPGPQ 119
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFA--PAGEAQKTLP--RGSASPPRSPALRPAAGLRGRS 60
G PGS G GP + P +LP +G+ P P ++ G G
Sbjct: 132 GFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIP 191
Query: 61 GAQGPQRP 68
G GP P
Sbjct: 192 GPIGPPGP 199
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 4 SGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
SG+PGS G GP P Q + +G A PP P GL+G G Q
Sbjct: 1341 SGVPGSAGPEGEPGLIGPPGPPGL-PGPSGQSIIIKGDAGPPGIPG---QPGLKGLPGPQ 1396
Query: 64 GPQ 66
GPQ
Sbjct: 1397 GPQ 1399
Score = 33.1 bits (74), Expect = 0.050
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
+ G PG+ G GP F P GE LP G PP P + A G +G G
Sbjct: 720 IPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALP-GPPGPPGLPGFKGALGPKGDRG 778
Query: 62 AQGPQRP 68
GP P
Sbjct: 779 FPGPPGP 785
Score = 30.8 bits (68), Expect = 0.25
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFAPAGE-AQKTLPR--GSASPPRSPALRPAAGLRGRSG 61
G PG + G GP L P GE +P G PP SP L AG G G
Sbjct: 834 GQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPG 893
Query: 62 AQG 64
+G
Sbjct: 894 TKG 896
Score = 29.6 bits (65), Expect = 0.55
Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 18/112 (16%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLP-----------RGSASPPRSPALR 51
L G PG+ ++GS G L P + Q LP +G + PP +P L
Sbjct: 1087 LPGYPGNPGIKGSVGDPGLPGLPG-TPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLP 1145
Query: 52 PAAGLRGRSGAQGPQRPRPAHYNSQEASRPDRRGATREGCVCGESRRPAHGS 103
G G G G P E +P + G GE +P G+
Sbjct: 1146 GEPGPVGGGGHPGQPGP------PGEKGKPGQDGIPGPAGQKGEPGQPGFGN 1191
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGAQ 63
G PG+ + G G + L P GE +G PP +P L GL G G
Sbjct: 564 GSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGL---PGLPGNIGPM 620
Query: 64 GP 65
GP
Sbjct: 621 GP 622
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAF-APAGEAQKTLPRGSASPPRSPALRPAAGLRGRSG 61
+ G PG + GS G F GE P G P P GL+G G
Sbjct: 867 IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDG 926
Query: 62 AQG-PQRPRP 70
QG P P P
Sbjct: 927 LQGQPGLPGP 936
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGLRGRSGA 62
L G PG + GS G + P G P+G P P A G GR G
Sbjct: 685 LPGQPGLPGIPGSKGEPGIPGIGLPGPPG------PKGFPGIPGPPG---APGTPGRIGL 735
Query: 63 QGPQRP 68
+GP P
Sbjct: 736 EGPPGP 741
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 3 LSGLPGSVSVRGSDRRAGPESLRAFAPAGEAQKTLPRGSASPPRSPALRPAAGL---RGR 59
L G PG G + GP + G P+G PP P GL G
Sbjct: 55 LEGHPGLPGFPGPEGPPGPRGQKG--DDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGH 112
Query: 60 SGAQGPQ 66
GA GPQ
Sbjct: 113 DGAPGPQ 119
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 5 GLPGSVSVRGSDRRAGPESLRAFA--PAGEAQKTLP--RGSASPPRSPALRPAAGLRGRS 60
G PGS G GP + P +LP +G+ P P ++ G G
Sbjct: 132 GFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIP 191
Query: 61 GAQGPQRP 68
G GP P
Sbjct: 192 GPIGPPGP 199
>gi|169211438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 37.0 bits (84), Expect = 0.003
Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 7 PGSVSVRGSDRRAGP---ESLRAFAPAGEAQK---TLPRGSASPPR-SPALRPAAGLRGR 59
PG + RG RR P + RA PA A TL G AS P S ALR AG GR
Sbjct: 40 PGPQAWRGEQRRGRPLLGRAPRASVPAPRAFPNLVTLGGGCASRPSPSSALRVRAGWAGR 99
Query: 60 SGAQGPQRPRPAHYNSQEASR 80
G RP + EA+R
Sbjct: 100 GAIAGSPSLRPCDLGATEATR 120
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,328,375
Number of Sequences: 37866
Number of extensions: 313887
Number of successful extensions: 4268
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 414
Number of HSP's that attempted gapping in prelim test: 2315
Number of HSP's gapped (non-prelim): 1941
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.