Guide to the Human Genome
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Name: LOC730427 Sequence: fasta or formatted (453aa) NCBI GI: 239750047
Description:

PREDICTED: similar to neuron navigator 2, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         16           2
 C cysteine            1.5          7           1
 D aspartate           5.7         26           2
 E glutamate           6.2         28           1
 F phenylalanine       2.6         12           1
 G glycine             6.4         29           1
 H histidine           3.5         16           2
 I isoleucine          6.2         28           2
 K lysine              3.8         17           1
 L leucine            12.4         56           2
 M methionine          2.2         10           1
 N asparagine          5.3         24           2
 P proline             5.7         26           2
 Q glutamine           2.9         13           2
 R arginine            5.5         25           2
 S serine              9.9         45           3
 T threonine           4.4         20           2
 V valine              6.4         29           2
 W tryptophan          2.2         10           1
 Y tyrosine            3.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to neuron navigator 2, partial [... 
NAV2                  1.000   neuron navigator 2 isoform 4 
NAV2                  1.000   neuron navigator 2 isoform 3 
NAV2                  1.000   neuron navigator 2 isoform 1 
NAV2                  1.000   neuron navigator 2 isoform 2 
LOC652725             0.748   PREDICTED: similar to neuron navigator 3, partial [...
NAV3                  0.748   neuron navigator 3 
LOC730426             0.490   PREDICTED: similar to NAV1 protein 
NAV1                  0.490   neuron navigator 1 
CTTNBP2               0.104   cortactin binding protein 2 
JHDM1D                0.011   jumonji C domain containing histone demethylase 1 ho...
TRIP13                0.009   thyroid hormone receptor interactor 13 
NLRP10                0.009   NLR family, pyrin domain containing 10 
RRAGA                 0.008   Ras-related GTP binding A 
RRAGB                 0.008   Ras-related GTP binding B short isoform 
RTEL1                 0.008   regulator of telomere elongation helicase 1 isoform ...
RTEL1                 0.008   regulator of telomere elongation helicase 1 isoform 1...
ABCB9                 0.007   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.007   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.007   ATP-binding cassette, sub-family B (MDR/TAP), member...
AKD1                  0.006   adenylate kinase domain containing 1 isoform 1 [Hom...
VPS4B                 0.006   vacuolar protein sorting factor 4B 
PEX6                  0.006   peroxisomal biogenesis factor 6 
RUVBL1                0.006   RuvB-like 1 
PSMC2                 0.006   proteasome 26S ATPase subunit 2 
VCP                   0.004   valosin-containing protein 
VCAN                  0.004   versican isoform 1 
C1orf89               0.004   hypothetical protein LOC79363 
ATAD3B                0.004   AAA-ATPase  TOB3 
ATAD3C                0.004   ATPase family, AAA domain containing 3C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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