Guide to the Human Genome
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Name: LOC652725 Sequence: fasta or formatted (733aa) NCBI GI: 169218146
Description:

PREDICTED: similar to neuron navigator 3, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         42           2
 C cysteine            1.8         13           1
 D aspartate           5.7         42           2
 E glutamate           7.0         51           2
 F phenylalanine       2.0         15           1
 G glycine             5.6         41           1
 H histidine           3.1         23           2
 I isoleucine          6.7         49           2
 K lysine              6.7         49           6
 L leucine            10.2         75           2
 M methionine          1.6         12           1
 N asparagine          5.5         40           2
 P proline             4.6         34           2
 Q glutamine           3.1         23           2
 R arginine            4.5         33           2
 S serine             12.6         92           5
 T threonine           5.5         40           2
 V valine              4.2         31           2
 W tryptophan          1.4         10           1
 Y tyrosine            2.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to neuron navigator 3, partial [... 
NAV3                  1.000   neuron navigator 3 
NAV2                  0.685   neuron navigator 2 isoform 1 
NAV2                  0.680   neuron navigator 2 isoform 4 
NAV2                  0.680   neuron navigator 2 isoform 3 
NAV2                  0.680   neuron navigator 2 isoform 2 
LOC730427             0.469   PREDICTED: similar to neuron navigator 2, partial [...
NAV1                  0.443   neuron navigator 1 
LOC730426             0.340   PREDICTED: similar to NAV1 protein 
CTTNBP2               0.062   cortactin binding protein 2 
GCC2                  0.012   GRIP and coiled-coil domain-containing 2 
UNC13C                0.011   unc-13 homolog C 
AFF1                  0.010   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
PPIG                  0.010   peptidylprolyl isomerase G 
PPFIA2                0.010   PTPRF interacting protein alpha 2 
DSPP                  0.010   dentin sialophosphoprotein preproprotein 
EHBP1L1               0.010   tangerin 
MLLT3                 0.009   myeloid/lymphoid or mixed-lineage leukemia (trithor...
SART1                 0.009   squamous cell carcinoma antigen recognized by T cell...
MYH15                 0.008   myosin, heavy polypeptide 15 
SETD1A                0.008   SET domain containing 1A 
SRRT                  0.008   arsenate resistance protein 2 isoform d 
SRRT                  0.008   arsenate resistance protein 2 isoform a 
TULP1                 0.008   tubby like protein 1 
ARID4A                0.008   retinoblastoma-binding protein 1 isoform III 
ARID4A                0.008   retinoblastoma-binding protein 1 isoform II 
ARID4A                0.008   retinoblastoma-binding protein 1 isoform I 
CENPF                 0.007   centromere protein F 
BRD3                  0.007   bromodomain containing protein 3 
RANBP10               0.007   RAN binding protein 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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