Guide to the Human Genome
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Name: RRAGA Sequence: fasta or formatted (313aa) NCBI GI: 5729999
Description:

Ras-related GTP binding A

Referenced in:

Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         18           2
 C cysteine            2.2          7           1
 D aspartate           5.8         18           1
 E glutamate           7.0         22           2
 F phenylalanine       6.1         19           1
 G glycine             2.6          8           2
 H histidine           2.6          8           1
 I isoleucine          7.3         23           2
 K lysine              5.8         18           3
 L leucine             9.6         30           2
 M methionine          3.8         12           1
 N asparagine          5.4         17           1
 P proline             2.2          7           1
 Q glutamine           4.5         14           2
 R arginine            7.3         23           2
 S serine              8.0         25           2
 T threonine           3.8         12           1
 V valine              6.4         20           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.9          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras-related GTP binding A 
RRAGB                 0.983   Ras-related GTP binding B short isoform 
RRAGB                 0.958   Ras-related GTP binding B long isoform 
RRAGC                 0.090   Ras-related GTP binding C 
RRAGD                 0.085   Ras-related GTP binding D 
RAB12                 0.028   RAB12, member RAS oncogene family 
RAN                   0.028   ras-related nuclear protein 
ARL3                  0.027   ADP-ribosylation factor-like 3 
RAB41                 0.023   RAB41, member RAS oncogene family 
ARL8B                 0.023   ADP-ribosylation factor-like 10C 
RAB4B                 0.023   ras-related GTP-binding protein 4b 
RAB34                 0.023   Ras-related protein RAB34 isoform 5 
RAB34                 0.023   Ras-related protein RAB34 isoform 3 
RAB34                 0.023   Ras-related protein RAB34 isoform 1 
LOC100131294          0.023   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.023   PREDICTED: similar to hCG24991 
LOC100131294          0.023   PREDICTED: similar to hCG24991 
ARL5A                 0.023   ADP-ribosylation factor-like 5A isoform 1 
KRAS                  0.022   c-K-ras2 protein isoform a precursor 
KRAS                  0.022   c-K-ras2 protein isoform b precursor 
RAB13                 0.022   RAB13, member RAS oncogene family 
RAB33A                0.022   Ras-related protein Rab-33A 
ARF4                  0.020   ADP-ribosylation factor 4 
HRAS                  0.020   v-Ha-ras Harvey rat sarcoma viral oncogene homolog ...
HRAS                  0.020   v-Ha-ras Harvey rat sarcoma viral oncogene homolog i...
HRAS                  0.020   v-Ha-ras Harvey rat sarcoma viral oncogene homolog is...
RAB33B                0.020   RAB33B, member RAS oncogene family 
ARL5B                 0.020   ADP-ribosylation factor-like 8 
RAB7B                 0.020   RAB7B, member RAS oncogene family 
ARF1                  0.020   ADP-ribosylation factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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