Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239749996
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
(487 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 1009 0.0
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 1004 0.0
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 999 0.0
gi|4504425 high-mobility group box 1 [Homo sapiens] 329 4e-90
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 309 3e-84
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 266 3e-71
gi|194688135 high-mobility group box 2 [Homo sapiens] 259 4e-69
gi|194688133 high-mobility group box 2 [Homo sapiens] 259 4e-69
gi|11321591 high-mobility group box 2 [Homo sapiens] 259 4e-69
gi|71143137 high-mobility group box 3 [Homo sapiens] 224 2e-58
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 212 5e-55
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 212 5e-55
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 212 7e-55
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 192 8e-49
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 192 8e-49
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 187 2e-47
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 187 2e-47
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 187 2e-47
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 187 2e-47
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 187 2e-47
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 187 2e-47
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 180 3e-45
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] 179 4e-45
gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens] 179 4e-45
gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] 166 3e-41
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 112 8e-25
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 83 6e-16
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 82 1e-15
gi|226246533 TOX high mobility group box family member 3 isoform... 80 3e-15
gi|226054295 TOX high mobility group box family member 3 isoform... 80 3e-15
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 1009 bits (2608), Expect = 0.0
Identities = 487/487 (100%), Positives = 487/487 (100%)
Query: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL 60
MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL
Sbjct: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL 60
Query: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL
Sbjct: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
Query: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN
Sbjct: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
Query: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL
Sbjct: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
Query: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA
Sbjct: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
Query: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEDGDDEQSHW 360
KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEDGDDEQSHW
Sbjct: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEDGDDEQSHW 360
Query: 361 QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG 420
QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG
Sbjct: 361 QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG 420
Query: 421 LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY 480
LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY
Sbjct: 421 LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY 480
Query: 481 YFSSLTK 487
YFSSLTK
Sbjct: 481 YFSSLTK 487
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 1004 bits (2596), Expect = 0.0
Identities = 487/488 (99%), Positives = 487/488 (99%), Gaps = 1/488 (0%)
Query: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL 60
MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL
Sbjct: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL 60
Query: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL
Sbjct: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
Query: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN
Sbjct: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
Query: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL
Sbjct: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
Query: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA
Sbjct: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
Query: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDED-EEDGDDEQSH 359
KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDED EEDGDDEQSH
Sbjct: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGDDEQSH 360
Query: 360 WQLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLS 419
WQLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLS
Sbjct: 361 WQLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLS 420
Query: 420 GLQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKIN 479
GLQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKIN
Sbjct: 421 GLQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKIN 480
Query: 480 YYFSSLTK 487
YYFSSLTK
Sbjct: 481 YYFSSLTK 488
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 999 bits (2583), Expect = 0.0
Identities = 485/487 (99%), Positives = 485/487 (99%), Gaps = 1/487 (0%)
Query: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL 60
MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVN DGFPSMKCSDELSLL
Sbjct: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNEDGFPSMKCSDELSLL 60
Query: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL
Sbjct: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
Query: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN
Sbjct: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
Query: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL
Sbjct: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
Query: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA
Sbjct: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
Query: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEDGDDEQSHW 360
KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD EDEDEEDDEDEEDGDDEQSHW
Sbjct: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD-EDEDEEDDEDEEDGDDEQSHW 359
Query: 361 QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG 420
QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG
Sbjct: 360 QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG 419
Query: 421 LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY 480
LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY
Sbjct: 420 LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY 479
Query: 481 YFSSLTK 487
YFSSLTK
Sbjct: 480 YFSSLTK 486
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 329 bits (843), Expect = 4e-90
Identities = 162/188 (86%), Positives = 171/188 (90%), Gaps = 7/188 (3%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNFSEFSKKCSERWK MSAKEKGKF EDMAKADKA Y+REMKTYIPPKGETKK
Sbjct: 35 SVNFSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIPPKGETKK 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQPYEK+
Sbjct: 88 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
+AKLKEKYEKDIAAYRAKGK DAA GVVKA KSKKKKEEEE+EEDEEDEEEE+DEEDED
Sbjct: 148 AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
Query: 344 EEDDEDEE 351
EE+D+D+E
Sbjct: 208 EEEDDDDE 215
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 309 bits (792), Expect = 3e-84
Identities = 154/185 (83%), Positives = 165/185 (89%), Gaps = 8/185 (4%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNFSEFS KCSERWK MSAKEKGKF EDMAKADK HY+R+MKTYIPPKGETKK
Sbjct: 35 SVNFSEFSNKCSERWKTMSAKEKGKF-------EDMAKADKTHYERQMKTYIPPKGETKK 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQP EK+
Sbjct: 88 KFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
+AKLKEKYEKDIAAY+AKGK +AA GVVKA KSKKKKEEEE+EEDEEDEEEE DEEDE+
Sbjct: 148 AAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEE-DEEDEE 206
Query: 344 EEDDE 348
++DDE
Sbjct: 207 DDDDE 211
Score = 61.6 bits (148), Expect = 2e-09
Identities = 53/207 (25%), Positives = 79/207 (38%), Gaps = 77/207 (37%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP P+ S AFF+ K K ++F + + K E W +A +K +E +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKH------- 304
K YE+ + Y + KG+H
Sbjct: 65 KADKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGD 124
Query: 305 --------------DAANNGVVKAAKSKKKKEE---------------------EENEED 329
D G KAAK K+K E+ E++++
Sbjct: 125 VAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKK 184
Query: 330 EEDEEEEKDEEDEDEEDDEDEEDGDDE 356
+E+EE+E+DEEDE+EED+EDEED DDE
Sbjct: 185 KEEEEDEEDEEDEEEEDEEDEEDDDDE 211
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 266 bits (680), Expect = 3e-71
Identities = 136/181 (75%), Positives = 149/181 (82%), Gaps = 10/181 (5%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SV FSEF KKCSE WK + AKEKGKF EDMAKADKAHY+REMKTYIPPKGE KK
Sbjct: 709 SVKFSEFLKKCSETWKTIFAKEKGKF-------EDMAKADKAHYEREMKTYIPPKGEKKK 761
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
KFKDPNAPKRPP AFFL+ SEY PKIKGE PGLS DV KKL MWNNTAA DKQ YEK+
Sbjct: 762 KFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKK 821
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
+AKLKEKY+KDIAAYRAKGK ++A VVKA KSKKKKEEEE DEEDE+EE++EED+D
Sbjct: 822 AAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEE---DEEDEQEEENEEDDD 878
Query: 344 E 344
+
Sbjct: 879 K 879
Score = 38.1 bits (87), Expect = 0.018
Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 72/177 (40%)
Query: 248 KIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAY--------- 298
K K + F + KK E W A +K +E + K YE+++ Y
Sbjct: 702 KKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKK 761
Query: 299 ------------------------RAKGKHDAA-------------NNGVV--------K 313
+ KG+H NN K
Sbjct: 762 KFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKK 821
Query: 314 AAKSKKKKEEE------------------ENEEDEEDEEEEKDEEDEDEEDDEDEED 352
AAK K+K +++ + E+ ++ +EEE+DEEDE EE++E+++D
Sbjct: 822 AAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENEEDDD 878
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 259 bits (662), Expect = 4e-69
Identities = 126/182 (69%), Positives = 146/182 (80%), Gaps = 7/182 (3%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E E+ EE+EE+E+E+++EEDED
Sbjct: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDED 207
Query: 344 EE 345
EE
Sbjct: 208 EE 209
Score = 50.1 bits (118), Expect = 5e-06
Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 80/205 (39%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
K +Y++++ Y + K +H + G
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 312 V---------------------KAAKSKKKKEEE-----------------------ENE 327
KAAK K+K E++ + +
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 328 EDEEDEEEEKDEEDED-EEDDEDEE 351
+ EDEEEE++EEDED EE+DEDEE
Sbjct: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 259 bits (662), Expect = 4e-69
Identities = 126/182 (69%), Positives = 146/182 (80%), Gaps = 7/182 (3%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E E+ EE+EE+E+E+++EEDED
Sbjct: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDED 207
Query: 344 EE 345
EE
Sbjct: 208 EE 209
Score = 50.1 bits (118), Expect = 5e-06
Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 80/205 (39%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
K +Y++++ Y + K +H + G
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 312 V---------------------KAAKSKKKKEEE-----------------------ENE 327
KAAK K+K E++ + +
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 328 EDEEDEEEEKDEEDED-EEDDEDEE 351
+ EDEEEE++EEDED EE+DEDEE
Sbjct: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 259 bits (662), Expect = 4e-69
Identities = 126/182 (69%), Positives = 146/182 (80%), Gaps = 7/182 (3%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E E+ EE+EE+E+E+++EEDED
Sbjct: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDED 207
Query: 344 EE 345
EE
Sbjct: 208 EE 209
Score = 50.1 bits (118), Expect = 5e-06
Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 80/205 (39%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
K +Y++++ Y + K +H + G
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 312 V---------------------KAAKSKKKKEEE-----------------------ENE 327
KAAK K+K E++ + +
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 328 EDEEDEEEEKDEEDED-EEDDEDEE 351
+ EDEEEE++EEDED EE+DEDEE
Sbjct: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 224 bits (570), Expect = 2e-58
Identities = 115/180 (63%), Positives = 133/180 (73%), Gaps = 13/180 (7%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF+EFSKKCSERWK MS KEK KF ++MAKADK Y REMK Y P KG K
Sbjct: 34 VPVNFAEFSKKCSERWKTMSGKEKSKF-------DEMAKADKVRYDREMKDYGPAKGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
KK DPNAPKRPPS FFL+ SE+ PKIK PG+S GDVAKKLGEMWNN +KQPY
Sbjct: 87 KK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT 144
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDE 342
++AKLKEKYEKD+A Y++KGK D A AK +KK EEE+EE+EE+EEEE++EEDE
Sbjct: 145 KAAKLKEKYEKDVADYKSKGKFDGAKG----PAKVARKKVEEEDEEEEEEEEEEEEEEDE 200
Score = 46.2 bits (108), Expect = 7e-05
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 74/196 (37%)
Query: 227 DPNAPKRPPSA--FFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP PK SA FF+ K K ++F + +KK E W + +K +++ +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 285 AKLKEKYEKDIAAY-RAKG--------------------------KHDAANNG------- 310
K +Y++++ Y AKG K + N G
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVA 124
Query: 311 ------------------VVKAAKSKKKKEEE--------------------ENEEDEED 332
+ KAAK K+K E++ + +EED
Sbjct: 125 KKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEED 184
Query: 333 EEEEKDEEDEDEEDDE 348
EEEE++EE+E+EE+DE
Sbjct: 185 EEEEEEEEEEEEEEDE 200
Score = 30.8 bits (68), Expect = 2.9
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 140 PVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDM 199
P RP S ++ + +KK E W N++ EK + K ++
Sbjct: 93 PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEK 152
Query: 200 AKADKAHYKREMK 212
+ D A YK + K
Sbjct: 153 YEKDVADYKSKGK 165
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 212 bits (540), Expect = 5e-55
Identities = 112/180 (62%), Positives = 129/180 (71%), Gaps = 14/180 (7%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF+EFSKKCS RWK MS+KEK KFG +MAKAD+ Y REMK Y P KG K
Sbjct: 34 VPVNFAEFSKKCSGRWKTMSSKEKFKFG-------EMAKADEVCYDREMKDYGPAKGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNAPKRPPS FFL+ SE+ PKIK PG+S GDVAKKLGEMWNN +KQPY
Sbjct: 87 K---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDE 342
++AKLKEKYEKD+ + KGK G + AK +KK EEE+EEDEE+EE+EKDEEDE
Sbjct: 144 KAAKLKEKYEKDVVDCKLKGKF----YGAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 212 bits (540), Expect = 5e-55
Identities = 112/180 (62%), Positives = 129/180 (71%), Gaps = 14/180 (7%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF+EFSKKCS RWK MS+KEK KFG +MAKAD+ Y REMK Y P KG K
Sbjct: 34 VPVNFAEFSKKCSGRWKTMSSKEKFKFG-------EMAKADEVCYDREMKDYGPAKGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNAPKRPPS FFL+ SE+ PKIK PG+S GDVAKKLGEMWNN +KQPY
Sbjct: 87 K---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDE 342
++AKLKEKYEKD+ + KGK G + AK +KK EEE+EEDEE+EE+EKDEEDE
Sbjct: 144 KAAKLKEKYEKDVVDCKLKGKF----YGAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 212 bits (539), Expect = 7e-55
Identities = 112/180 (62%), Positives = 129/180 (71%), Gaps = 14/180 (7%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF+EFSKKCS RWK MS+KEK KFG +MAKAD+ Y REMK Y P KG K
Sbjct: 34 VLVNFAEFSKKCSGRWKTMSSKEKFKFG-------EMAKADEVCYDREMKDYGPAKGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNAPKRPPS FFL+ SE+ PKIK PG+S GDVAKKLGEMWNN +KQPY
Sbjct: 87 K---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDE 342
++AKLKEKYEKD+ + KGK G + AK +KK EEE+EEDEE+EE+EKDEEDE
Sbjct: 144 KAAKLKEKYEKDVVDCKLKGKF----YGAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 192 bits (487), Expect = 8e-49
Identities = 98/169 (57%), Positives = 118/169 (69%), Gaps = 14/169 (8%)
Query: 162 RVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGET 221
+V +NF+EFSKKCSERWK MS KEK KF ++AKADK HY +E+K Y P KG
Sbjct: 33 KVPINFAEFSKKCSERWKTMSKKEKSKFN-------ELAKADKVHYDQEIKDYGPAKGGK 85
Query: 222 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYE 281
KK DPNAPKRPPS FFL+ SE+ PK K PG+ GDVAKKLGEMW N +KQPY
Sbjct: 86 KK---DPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142
Query: 282 KRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDE 330
++AKLKEKYEKD+A Y++KGK D A AK +KK EEE+E++E
Sbjct: 143 TQAAKLKEKYEKDVAVYKSKGKSDGAKG----PAKVAQKKVEEEDEDEE 187
Score = 35.4 bits (80), Expect = 0.12
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 227 DPNAPKRPPSA--FFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP PK SA FF+ K K + ++F + +KK E W + +K + + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 285 AKLKEKYEKDIAAY-RAKG 302
K Y+++I Y AKG
Sbjct: 65 KADKVHYDQEIKDYGPAKG 83
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 192 bits (487), Expect = 8e-49
Identities = 98/169 (57%), Positives = 118/169 (69%), Gaps = 14/169 (8%)
Query: 162 RVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGET 221
+V +NF+EFSKKCSERWK MS KEK KF ++AKADK HY +E+K Y P KG
Sbjct: 33 KVPINFAEFSKKCSERWKTMSKKEKSKFN-------ELAKADKVHYDQEIKDYGPAKGGK 85
Query: 222 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYE 281
KK DPNAPKRPPS FFL+ SE+ PK K PG+ GDVAKKLGEMW N +KQPY
Sbjct: 86 KK---DPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142
Query: 282 KRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDE 330
++AKLKEKYEKD+A Y++KGK D A AK +KK EEE+E++E
Sbjct: 143 TQAAKLKEKYEKDVAVYKSKGKSDGAKG----PAKVAQKKVEEEDEDEE 187
Score = 35.4 bits (80), Expect = 0.12
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 227 DPNAPKRPPSA--FFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP PK SA FF+ K K + ++F + +KK E W + +K + + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 285 AKLKEKYEKDIAAY-RAKG 302
K Y+++I Y AKG
Sbjct: 65 KADKVHYDQEIKDYGPAKG 83
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 187 bits (475), Expect = 2e-47
Identities = 100/177 (56%), Positives = 126/177 (71%), Gaps = 11/177 (6%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF EFSKKCSE+ K MS KEK KF ++MAK DK HY +EMK P +G K
Sbjct: 34 VPVNFVEFSKKCSEKRKTMSGKEKTKF-------DEMAKVDKVHYDQEMKDNGPVEGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNA KRP S FFL+ SE+ PKIK PG+S GD+AKKLGEMW N + +KQPY
Sbjct: 87 K---DPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYIT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDE 339
++A LKEKYEKD+A Y++KGK D+A G K A K K++++E+EE+EE+EEE+K+E
Sbjct: 144 KAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAWKKVKEKDKEDEEEEEEEEEKKEE 199
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 187 bits (475), Expect = 2e-47
Identities = 100/177 (56%), Positives = 126/177 (71%), Gaps = 11/177 (6%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF EFSKKCSE+ K MS KEK KF ++MAK DK HY +EMK P +G K
Sbjct: 34 VPVNFVEFSKKCSEKRKTMSGKEKTKF-------DEMAKVDKVHYDQEMKDNGPVEGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNA KRP S FFL+ SE+ PKIK PG+S GD+AKKLGEMW N + +KQPY
Sbjct: 87 K---DPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYIT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDE 339
++A LKEKYEKD+A Y++KGK D+A G K A K K++++E+EE+EE+EEE+K+E
Sbjct: 144 KAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAWKKVKEKDKEDEEEEEEEEEKKEE 199
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 187 bits (475), Expect = 2e-47
Identities = 100/177 (56%), Positives = 126/177 (71%), Gaps = 11/177 (6%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF EFSKKCSE+ K MS KEK KF ++MAK DK HY +EMK P +G K
Sbjct: 34 VPVNFVEFSKKCSEKRKTMSGKEKTKF-------DEMAKVDKVHYDQEMKDNGPVEGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNA KRP S FFL+ SE+ PKIK PG+S GD+AKKLGEMW N + +KQPY
Sbjct: 87 K---DPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYIT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDE 339
++A LKEKYEKD+A Y++KGK D+A G K A K K++++E+EE+EE+EEE+K+E
Sbjct: 144 KAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAWKKVKEKDKEDEEEEEEEEEKKEE 199
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 187 bits (474), Expect = 2e-47
Identities = 102/172 (59%), Positives = 119/172 (69%), Gaps = 15/172 (8%)
Query: 160 KVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKG 219
K + VNF+EFSKKCSERWK MS KEK KF ++MAK DK H REMK P KG
Sbjct: 28 KKKNPVNFAEFSKKCSERWKTMSGKEKSKF-------DEMAKTDKVHCDREMKG--PAKG 78
Query: 220 ETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQP 279
KKK DP+APKRPPS FFL+ SE PKIK PG+S GDVAKKLGEMWNN +KQP
Sbjct: 79 GKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 136
Query: 280 YEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEE 331
Y ++AKLKEKYEKD+A ++KGK D G + AK KK EEE+E++EE
Sbjct: 137 YITKTAKLKEKYEKDVADSKSKGKFD----GSKRPAKVAWKKVEEEDEDEEE 184
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 187 bits (474), Expect = 2e-47
Identities = 102/172 (59%), Positives = 119/172 (69%), Gaps = 15/172 (8%)
Query: 160 KVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKG 219
K + VNF+EFSKKCSERWK MS KEK KF ++MAK DK H REMK P KG
Sbjct: 28 KKKNPVNFAEFSKKCSERWKTMSGKEKSKF-------DEMAKTDKVHCDREMKG--PAKG 78
Query: 220 ETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQP 279
KKK DP+APKRPPS FFL+ SE PKIK PG+S GDVAKKLGEMWNN +KQP
Sbjct: 79 GKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 136
Query: 280 YEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEE 331
Y ++AKLKEKYEKD+A ++KGK D G + AK KK EEE+E++EE
Sbjct: 137 YITKTAKLKEKYEKDVADSKSKGKFD----GSKRPAKVAWKKVEEEDEDEEE 184
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 187 bits (474), Expect = 2e-47
Identities = 102/172 (59%), Positives = 119/172 (69%), Gaps = 15/172 (8%)
Query: 160 KVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKG 219
K + VNF+EFSKKCSERWK MS KEK KF ++MAK DK H REMK P KG
Sbjct: 28 KKKNPVNFAEFSKKCSERWKTMSGKEKSKF-------DEMAKTDKVHCDREMKG--PAKG 78
Query: 220 ETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQP 279
KKK DP+APKRPPS FFL+ SE PKIK PG+S GDVAKKLGEMWNN +KQP
Sbjct: 79 GKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 136
Query: 280 YEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEE 331
Y ++AKLKEKYEKD+A ++KGK D G + AK KK EEE+E++EE
Sbjct: 137 YITKTAKLKEKYEKDVADSKSKGKFD----GSKRPAKVAWKKVEEEDEDEEE 184
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 180 bits (456), Expect = 3e-45
Identities = 98/163 (60%), Positives = 113/163 (69%), Gaps = 15/163 (9%)
Query: 169 EFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDP 228
EFSKKCSERWK MS KEK KF ++MAK DK H REMK P KG KKK DP
Sbjct: 19 EFSKKCSERWKTMSGKEKSKF-------DEMAKTDKVHCDREMKG--PAKGGKKKK--DP 67
Query: 229 NAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLK 288
+APKRPPS FFL+ SE PKIK PG+S GDVAKKLGEMWNN +KQPY ++AKLK
Sbjct: 68 SAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLK 127
Query: 289 EKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEE 331
EKYEKD+A ++KGK D G + AK KK EEE+E++EE
Sbjct: 128 EKYEKDVADSKSKGKFD----GSKRPAKVAWKKVEEEDEDEEE 166
>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 179 bits (455), Expect = 4e-45
Identities = 88/125 (70%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 201 KADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGD 260
K D AHY+REMK YIPPK ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS D
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 261 VAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKK 320
VAKKLGEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKK
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
Query: 321 KEEEE 325
KEE++
Sbjct: 153 KEEDK 157
>gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 179 bits (455), Expect = 4e-45
Identities = 88/125 (70%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 201 KADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGD 260
K D AHY+REMK YIPPK ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS D
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 261 VAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKK 320
VAKKLGEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKK
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
Query: 321 KEEEE 325
KEE++
Sbjct: 153 KEEDK 157
>gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 227
Score = 166 bits (421), Expect = 3e-41
Identities = 95/180 (52%), Positives = 113/180 (62%), Gaps = 24/180 (13%)
Query: 146 SHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKA 205
SHCSTLSSIETAPG+VR + S K S+ + M ++
Sbjct: 29 SHCSTLSSIETAPGQVRAKQALGD-----SALLKKKSSTQ-------------MLQSTSQ 70
Query: 206 HYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKL 265
+ R + + ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS DVAKKL
Sbjct: 71 SFLRSAQ-----RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKL 124
Query: 266 GEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEE 325
GEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKKKEE++
Sbjct: 125 GEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 112 bits (280), Expect = 8e-25
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 11/136 (8%)
Query: 165 VNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKK 224
V F EFS+KCSE+W+++S EK K+ E +AK DKA Y+ EM Y+ G+ KK+
Sbjct: 36 VGFKEFSRKCSEKWRSISKHEKAKY-------EALAKLDKARYQEEMMNYV---GKRKKR 85
Query: 225 FK-DPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
K DP P+RPPS+F L+ ++ ++K E P S VAK G+MW+ +K PYE+R
Sbjct: 86 RKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQR 145
Query: 284 SAKLKEKYEKDIAAYR 299
A L+ KY +++ YR
Sbjct: 146 VALLRAKYFEELELYR 161
Score = 36.6 bits (83), Expect = 0.053
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 231 PKRPPSAFFLYFSEYGPKIKGERPG--LSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLK 288
PK S++ + Y K K ++P + F + ++K E W + + +K YE + K
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 289 EKYEKDIAAYRAKGK 303
+Y++++ Y K K
Sbjct: 69 ARYQEEMMNYVGKRK 83
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 82.8 bits (203), Expect = 6e-16
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 31/196 (15%)
Query: 182 SAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLY 241
S+ +G R K + + KA A ++ K K KK KDPNAPKRP SA+ L+
Sbjct: 503 SSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKKGKDPNAPKRPMSAYMLW 557
Query: 242 FSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAK 301
+ KIK + PG+S D++KK GE+W + + K+ +++++ + YEK + Y
Sbjct: 558 LNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG- 616
Query: 302 GKHDAANNGVVKAAKSKKKKEEEEN-------------------------EEDEEDEEEE 336
G+ +++ K K K K E+++ DE E
Sbjct: 617 GRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGEN 676
Query: 337 KDEEDEDEEDDEDEED 352
K ++ +D +EE+
Sbjct: 677 KSKKKRRRSEDSEEEE 692
Score = 44.3 bits (103), Expect = 3e-04
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 46/209 (22%)
Query: 140 PVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDM 199
P RP ++ L++ ++ ++ SKK E WK MS ++K ++ R K ED
Sbjct: 547 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDR---KAED- 602
Query: 200 AKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFG 259
A+ D Y++ MK Y +GE+ K+ K K K+K E+
Sbjct: 603 ARRD---YEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKMEK------ 639
Query: 260 DVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKK 319
K +++ + +Q E S K KE D + + G++ KSKK
Sbjct: 640 ---KSTPSRGSSSKSSSRQLSE--SFKSKEFVSSDES---SSGEN-----------KSKK 680
Query: 320 KKEEEENEEDEEDEEEEKDEEDEDEEDDE 348
K+ E+ E+EE ED DE
Sbjct: 681 KRRRSEDSEEEELASTPPSSEDSASGSDE 709
Score = 29.3 bits (64), Expect = 8.4
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 22/167 (13%)
Query: 249 IKGERPGLSFGDVAKKLGEMWNNTAADDKQP-YEKRSAKLKEKYEKDIAAYRAKGKHDAA 307
I+ E G F V K + N + P Y++ + +++++ + + +GK
Sbjct: 406 IEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREE 465
Query: 308 NNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEDGDDEQSHWQLFLACC 367
N ++ E E+EED EE D + + DE+ QL A
Sbjct: 466 NANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKM 525
Query: 368 PEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPL 414
+D++ + K PV K+G D NA RP+
Sbjct: 526 AKDRK-------------SRKKPV--------EVKKGKDPNAPKRPM 551
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 82.0 bits (201), Expect = 1e-15
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 217 PKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
PK KKK KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW+ +
Sbjct: 247 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQ 306
Query: 277 KQPYEKRSAKLKEKYEKDIAAYRA 300
KQ Y+K++ K++Y K +AAYRA
Sbjct: 307 KQVYKKKTEAAKKEYLKQLAAYRA 330
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 80.5 bits (197), Expect = 3e-15
Identities = 36/84 (42%), Positives = 56/84 (66%)
Query: 217 PKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
PK KKK KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW++ +
Sbjct: 236 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 295
Query: 277 KQPYEKRSAKLKEKYEKDIAAYRA 300
KQ Y++++ K++Y K +AAYRA
Sbjct: 296 KQVYKRKTEAAKKEYLKALAAYRA 319
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 80.5 bits (197), Expect = 3e-15
Identities = 36/84 (42%), Positives = 56/84 (66%)
Query: 217 PKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
PK KKK KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW++ +
Sbjct: 241 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 300
Query: 277 KQPYEKRSAKLKEKYEKDIAAYRA 300
KQ Y++++ K++Y K +AAYRA
Sbjct: 301 KQVYKRKTEAAKKEYLKALAAYRA 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,775,886
Number of Sequences: 37866
Number of extensions: 1279792
Number of successful extensions: 51191
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 14192
Number of HSP's gapped (non-prelim): 15296
length of query: 487
length of database: 18,247,518
effective HSP length: 106
effective length of query: 381
effective length of database: 14,233,722
effective search space: 5423048082
effective search space used: 5423048082
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.