Guide to the Human Genome
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Search of human proteins with 239749955

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens]
         (445 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755464 PREDICTED: similar to hCG2045708 [Homo sapiens]          904   0.0  
gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens]          904   0.0  
gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo ...   904   0.0  
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    47   5e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    47   5e-05
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         45   2e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           44   3e-04
gi|18959210 WIRE protein [Homo sapiens]                                44   3e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni...    43   5e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    43   7e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    43   7e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    43   7e-04
gi|210032580 SET domain containing 1B [Homo sapiens]                   42   9e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    42   9e-04
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              42   9e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    42   0.001
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          42   0.001
gi|27735129 hypothetical protein LOC148345 [Homo sapiens]              42   0.001
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi...    41   0.002
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  41   0.003
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      41   0.003
gi|146134388 YLP motif containing 1 [Homo sapiens]                     41   0.003
gi|153792074 proline rich 12 [Homo sapiens]                            41   0.003
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]        40   0.003
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]        40   0.003
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    40   0.004
gi|197245373 proline rich 22 isoform 1 [Homo sapiens]                  40   0.006
gi|23503299 proline rich 22 isoform 2 [Homo sapiens]                   40   0.006
gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo s...    39   0.007
gi|239756197 PREDICTED: hypothetical protein [Homo sapiens]            39   0.007

>gi|239755464 PREDICTED: similar to hCG2045708 [Homo sapiens]
          Length = 445

 Score =  904 bits (2336), Expect = 0.0
 Identities = 445/445 (100%), Positives = 445/445 (100%)

Query: 1   MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
           MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD
Sbjct: 1   MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60

Query: 61  CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
           CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS
Sbjct: 61  CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120

Query: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
           PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK
Sbjct: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180

Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
           VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE
Sbjct: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240

Query: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
           GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV
Sbjct: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300

Query: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
           TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS
Sbjct: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360

Query: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
           TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR
Sbjct: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420

Query: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
           ASGRRLEGCMAAAAGSERVAEAVRL
Sbjct: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445


>gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens]
          Length = 445

 Score =  904 bits (2336), Expect = 0.0
 Identities = 445/445 (100%), Positives = 445/445 (100%)

Query: 1   MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
           MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD
Sbjct: 1   MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60

Query: 61  CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
           CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS
Sbjct: 61  CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120

Query: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
           PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK
Sbjct: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180

Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
           VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE
Sbjct: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240

Query: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
           GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV
Sbjct: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300

Query: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
           TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS
Sbjct: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360

Query: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
           TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR
Sbjct: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420

Query: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
           ASGRRLEGCMAAAAGSERVAEAVRL
Sbjct: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445


>gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo
           sapiens]
          Length = 445

 Score =  904 bits (2336), Expect = 0.0
 Identities = 445/445 (100%), Positives = 445/445 (100%)

Query: 1   MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
           MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD
Sbjct: 1   MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60

Query: 61  CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
           CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS
Sbjct: 61  CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120

Query: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
           PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK
Sbjct: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180

Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
           VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE
Sbjct: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240

Query: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
           GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV
Sbjct: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300

Query: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
           TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS
Sbjct: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360

Query: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
           TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR
Sbjct: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420

Query: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
           ASGRRLEGCMAAAAGSERVAEAVRL
Sbjct: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 70/252 (27%), Positives = 85/252 (33%), Gaps = 47/252 (18%)

Query: 11  TLAMLSLEPTGPHPQASSGLILNGPGTLNRTGV------LQGLRTPPP------------ 52
           +L  L   P  P  QA++ L   G  TL  T        L  L TPPP            
Sbjct: 350 SLQTLPSPPATPPSQATTSL---GSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQ 406

Query: 53  --PTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDV 110
             P+ P     S  +      P  LA  + +  FS      + A     P    ++ S  
Sbjct: 407 APPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSP-PASPPVSPSAT 465

Query: 111 PFPRSPDHGSPKLEQR-LQSCSQRGAGDPYAPKVTSPG-IPGPLGTMTLSTISNPGTRTT 168
           P    P    P L    LQ      A  P +P  T P   P PL    L     P     
Sbjct: 466 P----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP----- 516

Query: 169 CAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFS---VLPLTPLQKGGQPPPPGCPEVRA 225
                +  PA   P   A P P P   PGQ  FS    LP++PL      PPP  P V A
Sbjct: 517 ----PQAPPALATPPLQALPSP-PASFPGQAPFSPSASLPMSPL----ATPPPQAPPVLA 567

Query: 226 TRSEREPTRPPA 237
               + P  PPA
Sbjct: 568 APLLQVPPSPPA 579



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 138 PYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVP-GPTAWPEPLPLGDP 196
           P++P   SP +  P        +S   T  + A      P  +VP  P A P   P   P
Sbjct: 439 PFSPP-PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP 497

Query: 197 GQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGE 242
              A   L   PLQ     PPP  P   AT   +    PPA   G+
Sbjct: 498 PPQAPPPLAAPPLQLA--KPPPQAPPALATPPLQALPSPPASFPGQ 541



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 54/200 (27%), Positives = 69/200 (34%), Gaps = 24/200 (12%)

Query: 44  LQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKR 103
           LQ LR PP  T PR         +        +  +  P  S    S+        P   
Sbjct: 277 LQALR-PPQVTPPRKDAAPALGPLS-------SSPLATPSPSAALQSQAPPTLPATPHSS 328

Query: 104 KLT-ESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISN 162
            LT +   P P +P   SP     LQ+     A  P +   TS G   P    T S + +
Sbjct: 329 SLTCQLATPLPLAPP--SPSAPPSLQTLPSPPATPP-SQATTSLG--SPTLQATHSFLPS 383

Query: 163 PGTRTTCAHHQEGGPAAKVP------GPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPP 216
           P          +  PA  +P       P A P   PL  P   A + L +  LQ    PP
Sbjct: 384 PPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPP 443

Query: 217 PPGCPEVRATRSEREPTRPP 236
           P   P V+A  S   P  PP
Sbjct: 444 P--SPPVQAPFS--PPASPP 459



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 48/195 (24%), Positives = 65/195 (33%), Gaps = 16/195 (8%)

Query: 46  GLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKL 105
           GL TP PP  PR       + ++V   +G AG +     ++ +G    A       +   
Sbjct: 23  GLLTPRPPGSPRPPPPVTPAALRV---LGAAGAVGRKPLAERAGGIGGATIPESAPRAGP 79

Query: 106 TESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPG---IPG-PLGTMTLSTIS 161
           T S     R+P    P         S RG   P A K TSPG    PG   GT     + 
Sbjct: 80  TRSAGTSSRNPASRPP--------ASGRGERAPPA-KNTSPGPVSSPGRASGTTRPGPLG 130

Query: 162 NPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
             G R +       G A + P  +A          G T  +  P    +        G P
Sbjct: 131 QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLP 190

Query: 222 EVRATRSEREPTRPP 236
               +   R PT  P
Sbjct: 191 RPAPSARPRPPTEGP 205


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 70/252 (27%), Positives = 85/252 (33%), Gaps = 47/252 (18%)

Query: 11  TLAMLSLEPTGPHPQASSGLILNGPGTLNRTGV------LQGLRTPPP------------ 52
           +L  L   P  P  QA++ L   G  TL  T        L  L TPPP            
Sbjct: 311 SLQTLPSPPATPPSQATTSL---GSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQ 367

Query: 53  --PTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDV 110
             P+ P     S  +      P  LA  + +  FS      + A     P    ++ S  
Sbjct: 368 APPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSP-PASPPVSPSAT 426

Query: 111 PFPRSPDHGSPKLEQR-LQSCSQRGAGDPYAPKVTSPG-IPGPLGTMTLSTISNPGTRTT 168
           P    P    P L    LQ      A  P +P  T P   P PL    L     P     
Sbjct: 427 P----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP----- 477

Query: 169 CAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFS---VLPLTPLQKGGQPPPPGCPEVRA 225
                +  PA   P   A P P P   PGQ  FS    LP++PL      PPP  P V A
Sbjct: 478 ----PQAPPALATPPLQALPSP-PASFPGQAPFSPSASLPMSPL----ATPPPQAPPVLA 528

Query: 226 TRSEREPTRPPA 237
               + P  PPA
Sbjct: 529 APLLQVPPSPPA 540



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 138 PYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVP-GPTAWPEPLPLGDP 196
           P++P   SP +  P        +S   T  + A      P  +VP  P A P   P   P
Sbjct: 400 PFSPP-PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP 458

Query: 197 GQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGE 242
              A   L   PLQ     PPP  P   AT   +    PPA   G+
Sbjct: 459 PPQAPPPLAAPPLQLA--KPPPQAPPALATPPLQALPSPPASFPGQ 502



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 41/147 (27%), Positives = 53/147 (36%), Gaps = 13/147 (8%)

Query: 96  KEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTM 155
           K+  P    L+ S +  P      SP     LQ+     A  P +   TS G   P    
Sbjct: 281 KDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPP-SQATTSLG--SPTLQA 337

Query: 156 TLSTISNPGTRTTCAHHQEGGPAAKVP------GPTAWPEPLPLGDPGQTAFSVLPLTPL 209
           T S + +P          +  PA  +P       P A P   PL  P   A + L +  L
Sbjct: 338 THSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLL 397

Query: 210 QKGGQPPPPGCPEVRATRSEREPTRPP 236
           Q    PPP   P V+A  S   P  PP
Sbjct: 398 QAPFSPPP--SPPVQAPFS--PPASPP 420


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 70/242 (28%), Positives = 85/242 (35%), Gaps = 63/242 (26%)

Query: 50  PPPPTEPRGADCSHYSLVQVDLPVGLAGDI-------------QEPRFS----------- 85
           PPPP  P  A    + L +  L   L GD              QE R S           
Sbjct: 260 PPPPPLPGLATSPPFQLTKPGLWSTLHGDAWGPERKGSAPPERQEQRHSLPHPYPYPAPA 319

Query: 86  ---QTSGSRLAADKEVCPEKRKL-TESDVPFPRSPDHGSPKLEQRLQ--------SCSQR 133
                 G RL       P  R    ES    P +   GS   E R+Q        S +  
Sbjct: 320 YTAHPPGHRLVPAAPPGPGPRPPGAESHGCLPATRPPGSDLRESRVQRSRMDSSVSPAAT 379

Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTT--------CAHHQEGGPAAKVP--- 182
            A  PYAP    PG+PG   + + S+ SN G R            H+Q   PA +V    
Sbjct: 380 TACVPYAPS-RPPGLPGTTTSSSSSSSSNTGLRGVEPNPGIPGADHYQT--PALEVSHHG 436

Query: 183 --GPTAWPEPLP-LGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQV 239
             GP+A     P LG P  T    LP  P      PPPP CP +        P  PPA +
Sbjct: 437 RLGPSAHSSRKPFLGAPAATPHLSLPPGP----SSPPPPPCPRL------LRPPPPPAWL 486

Query: 240 EG 241
           +G
Sbjct: 487 KG 488



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 58/230 (25%), Positives = 77/230 (33%), Gaps = 47/230 (20%)

Query: 21  GPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQ 80
           GP   +S    L  P       +  G  +PPPP  PR        L++   P        
Sbjct: 439 GPSAHSSRKPFLGAPAATPHLSLPPGPSSPPPPPCPR--------LLRPPPP-------- 482

Query: 81  EPRFSQTSGSRLAA-DKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPY 139
            P + +    R A  D E+  E    TE        P    P L  R       G   P 
Sbjct: 483 -PAWLKGPACRAAREDGEILEELFFGTEGP------PRPAPPPLPHR------EGFLGPP 529

Query: 140 APKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVP-GPTAWPEPL------- 191
           A + +       +GT    T   P T TT + +   G  +  P GP ++P P        
Sbjct: 530 ASRFS-------VGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFPPPPYLARSID 582

Query: 192 PLGDPGQTAFSVL--PLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQV 239
           PL  P   A +    PL PL     P PP       + S R P  P  +V
Sbjct: 583 PLPRPPSPAQNPQDPPLVPLTLALPPAPPSSCHQNTSGSFRRPESPRPRV 632


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 61/216 (28%), Positives = 75/216 (34%), Gaps = 54/216 (25%)

Query: 34  GPGTLNRTGVL-----QGLRTPPP---PTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFS 85
           GPG     G        GL  PP    P  P+G   SH     +  P G  G      + 
Sbjct: 318 GPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSH----GLPGPKGETGPAGPAGYP 373

Query: 86  QTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCS-QRGAGDPYAPKVT 144
              G R +   +  P           +P  P    PK    L       G G P      
Sbjct: 374 GAKGERGSPGSDGKPG----------YPGKPGLDGPKGNPGLPGPKGDPGVGGP------ 417

Query: 145 SPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGP--AAKVPGPTAWPEPLPLGDPGQTAFS 202
            PG+PGP+G          G +    H+ E GP  A  +PG        P+G PG     
Sbjct: 418 -PGLPGPVGP--------AGAKGMPGHNGEAGPRGAPGIPGTRG-----PIGPPG----- 458

Query: 203 VLPLTPLQKG--GQPPPPGCPEVRATRSEREPTRPP 236
            +P  P  KG  G P PPG P   AT+    PT PP
Sbjct: 459 -IPGFPGSKGDPGSPGPPG-PAGIATKGLNGPTGPP 492



 Score = 37.0 bits (84), Expect = 0.036
 Identities = 38/119 (31%), Positives = 44/119 (36%), Gaps = 35/119 (29%)

Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
           P  P +GSP L+                     PG+PGP G    S +  PG        
Sbjct: 80  PGKPGYGSPGLQGE-------------------PGLPGPPGP---SAVGKPGVPGLPGKP 117

Query: 173 QEGGP--------AAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKG--GQPPPPGCP 221
            E GP         A +PGP     P P G PG    SV P  P Q+G  G P P G P
Sbjct: 118 GERGPYGPKGDVGPAGLPGPRG--PPGPPGIPGPAGISV-PGKPGQQGPTGAPGPRGFP 173



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 20/95 (21%)

Query: 136 GDPYAPKVTSPGIPGPLGTMTLST---ISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLP 192
           GDP      SPG PGP G  T         PG      H  E G    +PGP        
Sbjct: 467 GDP-----GSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG----LPGPP------- 510

Query: 193 LGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATR 227
            G PG    +V+P   ++ G +P   G P V A +
Sbjct: 511 -GPPGPPGQAVMPEGFIKAGQRPSLSGTPLVSANQ 544



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 145 SPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVL 204
           +PGI GP G         PG +       E GPA    GP A  E  P G PG+     L
Sbjct: 286 APGIAGPPGPPGFGKPGLPGLKG------ERGPAGLPGGPGAKGEQGPAGLPGKPG---L 336

Query: 205 PLTPLQKGGQPPP--PGCPEVRATRSEREPTRP 235
              P   G Q P   PG   +   + E  P  P
Sbjct: 337 TGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGP 369


>gi|18959210 WIRE protein [Homo sapiens]
          Length = 440

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 56/229 (24%), Positives = 74/229 (32%), Gaps = 26/229 (11%)

Query: 19  PTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGD 78
           P  P  Q  S   L+ P T + TG+      PPPP   R A+     L            
Sbjct: 146 PELPRMQRPSLPDLSRPNTTSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYN- 204

Query: 79  IQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDP 138
            +E     T G RL   +E  P          P P  P    P         S +    P
Sbjct: 205 -REKPLPPTPGQRLHPGREGPP---------APPPVKP---PPSPVNIRTGPSGQSLAPP 251

Query: 139 YAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQ 198
             P    PG+P    + T  +      R    H        K PGP     P P      
Sbjct: 252 PPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHR-------KTPGPVRGLAPPPPTSASP 304

Query: 199 TAFSVLPLTPLQ----KGGQPPPPGCPEVRATRSEREPTRPPAQVEGED 243
           +  S  P  P +    +G  PPPP  P +R    +  P  PP ++ G +
Sbjct: 305 SLLSNRPPPPARDPPSRGAAPPPPP-PVIRNGARDAPPPPPPYRMHGSE 352


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 58/213 (27%), Positives = 72/213 (33%), Gaps = 28/213 (13%)

Query: 46   GLRTPPP---PTEPRGADCSHYSLVQVDLPVGLA-----------GDIQEPRFSQTSGSR 91
            GL TPPP   PT P     S    +    P G             G +  P  S      
Sbjct: 1162 GLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP--SPKGAPT 1219

Query: 92   LAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGP 151
              A     P+    T S    P +P    P  +    +   +GA  P  P  T P + G 
Sbjct: 1220 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTP--PAATPPSLKGG 1277

Query: 152  LGTMTLSTISNPGTRTTCAHHQEGGPAAK----VPGPTAWPEPLPLGDPGQTAFSVLPLT 207
            L T       NP   T  +   +GGPA       P P A   P P G PG       P  
Sbjct: 1278 LATPPHKGAPNPAVVTPPS--PKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTP 1335

Query: 208  PLQKGGQPPPPGCPEVRAT--RSEREPTRPPAQ 238
            P      P P G P + AT   S+  PT P ++
Sbjct: 1336 PAVT--PPSPKGTPTLPATTPSSKGGPTTPSSK 1366



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 46/167 (27%), Positives = 55/167 (32%), Gaps = 20/167 (11%)

Query: 80   QEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPD-HGSPKLEQRLQSCSQRGAGDP 138
            Q P  S TS S         P+K + T +    P SP   G+P          + G   P
Sbjct: 907  QAPALSMTSSS---------PKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATP 957

Query: 139  ---YAPKVTSPGIPGPLG-TMTLSTISNPGTRTTCAHHQEGGPAAK----VPGPTAWPEP 190
               +AP   +   P P G   T S    P          +GGPA       P P A   P
Sbjct: 958  SPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPP 1017

Query: 191  LPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPA 237
             P G P  T F     TP      PP P          +  PT P A
Sbjct: 1018 SPKGSPAATPFPKGASTP--PAATPPSPKGSPAATPLPKGAPTTPAA 1062



 Score = 35.8 bits (81), Expect = 0.081
 Identities = 34/113 (30%), Positives = 39/113 (34%), Gaps = 22/113 (19%)

Query: 113  PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
            P SP  GSP      +  S   A  P +PK +    P P G  T    + P  +      
Sbjct: 1016 PPSPK-GSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK------ 1068

Query: 173  QEGGPAAK----VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
              GGPA       P P A   P P G P          TP  KG   PP   P
Sbjct: 1069 --GGPATPSLKGAPTPPAATPPSPKGGPA---------TPSPKGAPMPPAATP 1110



 Score = 35.0 bits (79), Expect = 0.14
 Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 26/141 (18%)

Query: 113  PRSPDHGSPKLEQRLQSCSQRGAGDPY-----APK---VTSP--GIPGPLGTMTLSTISN 162
            P  P    P L+  L +   +GA +P      +PK    TSP  G P P      S   +
Sbjct: 1264 PTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGS 1323

Query: 163  PGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVL----PLTPLQKGGQPPPP 218
            PGT           P    P P A   P P G P   A +      P TP  K G  PP 
Sbjct: 1324 PGTP----------PPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPA 1373

Query: 219  GCPEVRA--TRSEREPTRPPA 237
              P  +     +   P R PA
Sbjct: 1374 ATPSHKGGPAMTPPSPKRGPA 1394



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 37/149 (24%), Positives = 49/149 (32%), Gaps = 27/149 (18%)

Query: 116  PDHGSPKLEQRLQSCSQRGAGDPYAPKVTS--------PGIPGPLGTMTLSTI------- 160
            P   S K +  L + +     +P APK  +        P  P P+G  TL  +       
Sbjct: 1456 PATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKE 1515

Query: 161  --SNPGTRT-----TCAHHQEGGPAAKVPG----PTAWPEPLPLGDPGQTAFSVLPLTPL 209
              + P +R      T     +  PA   P     P A   P P   P        P TP 
Sbjct: 1516 VPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPS 1575

Query: 210  QKGGQPPPPGCPEV-RATRSEREPTRPPA 237
             K    PP   P   +   S +E   PPA
Sbjct: 1576 SKEASSPPAVTPSTYKGAPSPKELLIPPA 1604


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 36/169 (21%)

Query: 134  GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK--VPGPTAWP--- 188
            GA  P  P    PG+PGP G       + P           GGP  +  V GP   P   
Sbjct: 1364 GASGPIGPG-GPPGLPGPAGPKGAKGATGP-----------GGPKGEKGVQGPPGHPGPP 1411

Query: 189  ----EPLPLGDPGQTAFSVLPLTPLQK------GGQPPPPGCPE-----VRATRSEREPT 233
                +PLP+  P +T  SV     +Q+      GG P  PG  E     + + R E E  
Sbjct: 1412 GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQM 1471

Query: 234  RPPAQVEGEDVLVHQ--LLLHQVVEDGQHVVDGDAGVGHAQDAIELGCD 280
            R P   +       Q   L H  + DG++ VD + G   A+DA  + C+
Sbjct: 1472 RRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGC--ARDAFRVFCN 1518



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 136 GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
           GDP  P   +PG  GP G         PG R        GGP  K     + P P P G 
Sbjct: 881 GDPGPPG--APGKDGPAGLRGF-----PGERGLPG--TAGGPGLKGNEGPSGP-PGPAGS 930

Query: 196 PGQ--TAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRP 235
           PG+   A S  P+ P  + G   PPG    +    E+ P  P
Sbjct: 931 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 972



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 35/104 (33%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 133 RGAGDPYAPK--VTSPGIPGPLGTM-TLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWP- 188
           RG   P  PK  +   G PGP G   T  T   PG +     H E GP  K PG    P 
Sbjct: 541 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK-PGLPGMPG 599

Query: 189 EPLPLGDPGQTAFSVLPLTPLQKGGQPP-----PPGCPEVRATR 227
              P G PG+         P  KG Q P     P G P  R  +
Sbjct: 600 SDGPPGHPGKEG------PPGTKGNQGPSGPQGPLGYPGPRGVK 637



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 15/99 (15%)

Query: 146 PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL-GDPGQTAFSVL 204
           PG PGP G   L     PGT        + GP    PG      P  L G PG+      
Sbjct: 859 PGPPGPPGEQGL-----PGTAGKEGTKGDPGP----PGAPGKDGPAGLRGFPGERGLPGT 909

Query: 205 PLTPLQKG-----GQPPPPGCPEVRATRSEREPTRPPAQ 238
              P  KG     G P P G P  R       P  PP +
Sbjct: 910 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 948


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 36/169 (21%)

Query: 134  GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK--VPGPTAWP--- 188
            GA  P  P    PG+PGP G       + P           GGP  +  V GP   P   
Sbjct: 1343 GASGPIGPG-GPPGLPGPAGPKGAKGATGP-----------GGPKGEKGVQGPPGHPGPP 1390

Query: 189  ----EPLPLGDPGQTAFSVLPLTPLQK------GGQPPPPGCPE-----VRATRSEREPT 233
                +PLP+  P +T  SV     +Q+      GG P  PG  E     + + R E E  
Sbjct: 1391 GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQM 1450

Query: 234  RPPAQVEGEDVLVHQ--LLLHQVVEDGQHVVDGDAGVGHAQDAIELGCD 280
            R P   +       Q   L H  + DG++ VD + G   A+DA  + C+
Sbjct: 1451 RRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGC--ARDAFRVFCN 1497



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 136 GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
           GDP  P   +PG  GP G         PG R        GGP  K     + P P P G 
Sbjct: 860 GDPGPPG--APGKDGPAGLRGF-----PGERGLPG--TAGGPGLKGNEGPSGP-PGPAGS 909

Query: 196 PGQ--TAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRP 235
           PG+   A S  P+ P  + G   PPG    +    E+ P  P
Sbjct: 910 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 951



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 35/104 (33%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 133 RGAGDPYAPK--VTSPGIPGPLGTM-TLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWP- 188
           RG   P  PK  +   G PGP G   T  T   PG +     H E GP  K PG    P 
Sbjct: 520 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK-PGLPGMPG 578

Query: 189 EPLPLGDPGQTAFSVLPLTPLQKGGQPP-----PPGCPEVRATR 227
              P G PG+         P  KG Q P     P G P  R  +
Sbjct: 579 SDGPPGHPGKEG------PPGTKGNQGPSGPQGPLGYPGPRGVK 616



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 15/99 (15%)

Query: 146 PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL-GDPGQTAFSVL 204
           PG PGP G   L     PGT        + GP    PG      P  L G PG+      
Sbjct: 838 PGPPGPPGEQGL-----PGTAGKEGTKGDPGP----PGAPGKDGPAGLRGFPGERGLPGT 888

Query: 205 PLTPLQKG-----GQPPPPGCPEVRATRSEREPTRPPAQ 238
              P  KG     G P P G P  R       P  PP +
Sbjct: 889 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 927


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 36/169 (21%)

Query: 134  GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK--VPGPTAWP--- 188
            GA  P  P    PG+PGP G       + P           GGP  +  V GP   P   
Sbjct: 1450 GASGPIGPG-GPPGLPGPAGPKGAKGATGP-----------GGPKGEKGVQGPPGHPGPP 1497

Query: 189  ----EPLPLGDPGQTAFSVLPLTPLQK------GGQPPPPGCPE-----VRATRSEREPT 233
                +PLP+  P +T  SV     +Q+      GG P  PG  E     + + R E E  
Sbjct: 1498 GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQM 1557

Query: 234  RPPAQVEGEDVLVHQ--LLLHQVVEDGQHVVDGDAGVGHAQDAIELGCD 280
            R P   +       Q   L H  + DG++ VD + G   A+DA  + C+
Sbjct: 1558 RRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGC--ARDAFRVFCN 1604



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 136  GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
            GDP  P   +PG  GP G         PG R        GGP  K     + P P P G 
Sbjct: 967  GDPGPPG--APGKDGPAGLRGF-----PGERGLPG--TAGGPGLKGNEGPSGP-PGPAGS 1016

Query: 196  PGQ--TAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRP 235
            PG+   A S  P+ P  + G   PPG    +    E+ P  P
Sbjct: 1017 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 1058



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 35/104 (33%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 133 RGAGDPYAPK--VTSPGIPGPLGTM-TLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWP- 188
           RG   P  PK  +   G PGP G   T  T   PG +     H E GP  K PG    P 
Sbjct: 627 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK-PGLPGMPG 685

Query: 189 EPLPLGDPGQTAFSVLPLTPLQKGGQPP-----PPGCPEVRATR 227
              P G PG+         P  KG Q P     P G P  R  +
Sbjct: 686 SDGPPGHPGKEG------PPGTKGNQGPSGPQGPLGYPGPRGVK 723



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 15/99 (15%)

Query: 146  PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL-GDPGQTAFSVL 204
            PG PGP G   L     PGT        + GP    PG      P  L G PG+      
Sbjct: 945  PGPPGPPGEQGL-----PGTAGKEGTKGDPGP----PGAPGKDGPAGLRGFPGERGLPGT 995

Query: 205  PLTPLQKG-----GQPPPPGCPEVRATRSEREPTRPPAQ 238
               P  KG     G P P G P  R       P  PP +
Sbjct: 996  AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 1034


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 62/224 (27%), Positives = 78/224 (34%), Gaps = 43/224 (19%)

Query: 48   RTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTE 107
            R P PP EP   D SH S+     P  LA D   P      GS           K + TE
Sbjct: 1289 RPPSPPPEPETTDASHPSVP----PEPLAED-HPPHTPGLCGSLA---------KSQSTE 1334

Query: 108  SDVPFPRSPDHGSPKLE---QRLQSCSQRGAGDPYA-----PKVTSPGIPGPLG-----T 154
            +    P +P  G P L      L   S +  G P++     P ++S G+P   G     T
Sbjct: 1335 T---VPATPG-GEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFT 1390

Query: 155  MTLSTISNPGTRTTCA-----HHQEGGPAAK-------VPGPTAWPEPLPLGDPGQTAFS 202
             T S  S P     C        +  GP A        +P P   P PLPL  P      
Sbjct: 1391 PTFSEPSGPLLLPVCPLPTGRRDERSGPLASPVLLETGLPLPLPLPLPLPLALPAVLRAQ 1450

Query: 203  VLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGEDVLV 246
                TPL      P   CP     +  R    PP+ +  +  LV
Sbjct: 1451 ARAPTPLPPLLPAPLASCPPPMKRKPGRPRRSPPSMLSLDGPLV 1494



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 39/172 (22%), Positives = 57/172 (33%), Gaps = 20/172 (11%)

Query: 50  PPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESD 109
           P PP EP   D +       ++ + L GD         +  ++   ++   E  ++++ +
Sbjct: 592 PRPPPEPGPPDPAGLLSQTAEVALDLVGD------RTPTSEKMDEGQQSSGEDMEISDDE 645

Query: 110 VPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTC 169
           +P         PK           GA    AP V +P +P P           PG     
Sbjct: 646 MPSAPITSADCPK-----PMVVTPGAAAVAAPSVLAPTLPLP---------PPPGFPPLP 691

Query: 170 AHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
                  P    P P   P P P   P   A +V P       G PPPP  P
Sbjct: 692 PPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPPPILP 743


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 40/115 (34%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 111 PFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTS-PG-IPGPLGTMTLSTISNPGTRTT 168
           P  + P H  P  +Q+     Q    D   P V   PG  PG       S+ + P T  T
Sbjct: 83  PPHQPPPHPQPHQQQQPPPPPQ----DSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPT 138

Query: 169 CAHHQEGGPAAKVPGPTAWPEPL----PLGDPGQTA-FSVLPLTPLQKGGQPPPP 218
                 G P    PGPT  P P     P G P  T   S +P TP Q GG PPPP
Sbjct: 139 -----SGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPP 188



 Score = 30.8 bits (68), Expect = 2.6
 Identities = 38/123 (30%), Positives = 44/123 (35%), Gaps = 47/123 (38%)

Query: 141 PKVTS--PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPA---AKVPGPTAWPE------ 189
           P VTS  PG P P       T  + G  TT    Q GGP    A VPGP   P+      
Sbjct: 155 PAVTSAPPGAPPP-------TPPSSGVPTTPP--QAGGPPPPPAAVPGPGPGPKQGPGPG 205

Query: 190 ----------PLPLGDPGQTAFSVLPLTPLQKGGQP-----------------PPPGCPE 222
                     P P G PG +     P  P + GG+P                 PPPG P 
Sbjct: 206 GPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPG 265

Query: 223 VRA 225
            R+
Sbjct: 266 GRS 268



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 172 HQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSERE 231
           +Q  GP    PG +    P+P   P Q      P  P  +  QPPP   P       +++
Sbjct: 41  NQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQ--QPPPHQPPPHPQPHQQQQ 98

Query: 232 PTRPP 236
           P  PP
Sbjct: 99  PPPPP 103


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 45/158 (28%), Positives = 60/158 (37%), Gaps = 31/158 (19%)

Query: 75  LAGDIQEPRFSQTSGSRLAA---DKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCS 131
           L     +P  S  SG ++     D+ V P   K     VP P SP    P+         
Sbjct: 633 LCSSSSDPAPSDRSGPQILTPLGDRFVIPPHPK-----VPAPFSPPPSKPR--------- 678

Query: 132 QRGAGDPYAPKVTSPGI-PGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK------VPGP 184
              + +P AP + +P + PGP+ T   S  S P  +TT    QE    +K       P P
Sbjct: 679 ---SPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPP 735

Query: 185 TAWPEPLPLGDP----GQTAFSVLPLTPLQKGGQPPPP 218
           +  P P P   P       + S     PLQ    PPPP
Sbjct: 736 SYHPPPPPTKKPEVVVEAPSASETAEEPLQDPNWPPPP 773



 Score = 35.8 bits (81), Expect = 0.081
 Identities = 66/259 (25%), Positives = 90/259 (34%), Gaps = 51/259 (19%)

Query: 21  GPHPQASSGLILNGPGTLNRTGV-LQGLRTPPPPTEPRGADCSHY-SLVQVDLPVGLAGD 78
           G   +AS  L +   G L+   V L+ L+ PPPP  PR     H   L   D P+GL   
Sbjct: 467 GSTAEASDTLSIRSSGQLSGRSVSLRKLKRPPPP--PRRTHSLHQRGLAVPDGPLGLPPK 524

Query: 79  ---IQEPRFSQ--TSGSRLAADKEVCPEKRKLTESDVPF---------PRSPDH------ 118
               Q+P+  +  T+G    A    CP       S VP          PRSP+       
Sbjct: 525 PERKQQPQLPRPPTTGGSEGAGAAPCPPNP--ANSWVPGLSPGGSRRPPRSPERTLSPSS 582

Query: 119 ------GSPKLEQRLQSCSQRGAGDPYAPK---VTSPGIPGPLGTMTLSTI--------- 160
                 G+P L  +  +      G    PK   VTS   PG   + +L+++         
Sbjct: 583 GYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAP 642

Query: 161 ---SNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD----PGQTAFSVLPLTPLQKGG 213
              S P   T         P  KVP P + P   P       P   A +V+P        
Sbjct: 643 SDRSGPQILTPLGDRFVIPPHPKVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDA 702

Query: 214 QPPPPGCPEVRATRSEREP 232
            P  P  P+   T  +  P
Sbjct: 703 SPQSPPTPQTTLTPLQESP 721



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 31/163 (19%)

Query: 50  PPPPTEPRGADCSH---------YSLVQVDLPVGLAGD---IQEPRFSQTSGSRLAADKE 97
           PPPP  P   D S          +  V    P G +G    +  P  S +S + L     
Sbjct: 771 PPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQPP 830

Query: 98  VCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPY----APKVTSPGIPGPLG 153
             P+      +  P   +P H + KL Q+      +G G P     AP VT    P  L 
Sbjct: 831 GSPDPPPAPPAPAPASSAPGHVA-KLPQKEPVGCSKGGGPPREDVGAPLVT----PSLLQ 885

Query: 154 TMTLSTISNPGTRTTCA----------HHQEGGPAAKVPGPTA 186
            + L ++  PG   T A               G A+ VP P++
Sbjct: 886 MVRLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVPAPSS 928


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 43/154 (27%), Positives = 57/154 (37%), Gaps = 32/154 (20%)

Query: 100 PEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGI----------- 148
           P    ++ S  P P++P    P     LQ      A  P +P  T P             
Sbjct: 711 PASPPMSPSATPPPQAPP---PLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQ 767

Query: 149 --PGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFS---V 203
             P P  ++ +S ++ P  +          PA   P   A P P P   PGQ  FS    
Sbjct: 768 VPPSPPASLPMSPLAKPPPQAP--------PALATPPLQALPSP-PASFPGQAPFSPSAS 818

Query: 204 LPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPA 237
           LP++PL      PPP  P V A    + P  PPA
Sbjct: 819 LPMSPL----ATPPPQAPPVLAAPLLQVPPSPPA 848



 Score = 38.1 bits (87), Expect = 0.016
 Identities = 55/201 (27%), Positives = 70/201 (34%), Gaps = 20/201 (9%)

Query: 47  LRTPP---PPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKR 103
           L  PP   PP+ P     S  +      P  LA  + +  FS      + A     P   
Sbjct: 625 LALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSP-PASP 683

Query: 104 KLTESDVPFPRSPDHGSPKLEQR-LQSCSQRGAGDPYAPKVTSPG-IPGPLGTMTLSTIS 161
            ++ S  P    P    P L    LQ      A  P +P  T P   P PL    L    
Sbjct: 684 PVSPSATP----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPP 739

Query: 162 NPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
           +P      +      P  +VP   A P   PL  P     S LP++PL K    PPP  P
Sbjct: 740 SPPASPPMS--PSATPPPRVPPLLAAP---PLQVPPSPPAS-LPMSPLAK----PPPQAP 789

Query: 222 EVRATRSEREPTRPPAQVEGE 242
              AT   +    PPA   G+
Sbjct: 790 PALATPPLQALPSPPASFPGQ 810



 Score = 37.7 bits (86), Expect = 0.021
 Identities = 55/201 (27%), Positives = 70/201 (34%), Gaps = 32/201 (15%)

Query: 50  PPPPTEPRGADCSHYSLVQVDLPVGLA-------GDIQEP--RFSQTSGSRLAADKEVCP 100
           P PPTE      S  S      P   A       G +Q P  R   +S + L++     P
Sbjct: 198 PRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGP 257

Query: 101 EKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTI 160
             R         PR+P H S    + LQ+        P   K  +P + GPL +  L+T 
Sbjct: 258 SARGT-------PRAPAHPSQPKPKGLQALRPPQVTPPR--KDAAPAL-GPLSSSPLATP 307

Query: 161 SNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGC 220
           S  GT+       +    A  P P   P   PL  P       LPL P      P     
Sbjct: 308 SPSGTKARPVPPPDN---AATPLPATLPPSPPLATP-------LPLAPPSPSAPPSLQTL 357

Query: 221 PEVRATRSEREP---TRPPAQ 238
           P   AT   + P   T PP Q
Sbjct: 358 PSPPATPPSQAPPSMTTPPMQ 378



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 48/195 (24%), Positives = 65/195 (33%), Gaps = 16/195 (8%)

Query: 46  GLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKL 105
           GL TP PP  PR       + ++V   +G AG +     ++ +G    A       +   
Sbjct: 23  GLLTPRPPGSPRPPPPVTPAALRV---LGAAGAVGRKPLAERAGGIGGATIPESAPRAGP 79

Query: 106 TESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPG---IPG-PLGTMTLSTIS 161
           T S     R+P    P         S RG   P A K TSPG    PG   GT     + 
Sbjct: 80  TRSAGTSSRNPASRPP--------ASGRGERAPPA-KNTSPGPVSSPGRASGTTRPGPLG 130

Query: 162 NPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
             G R +       G A + P  +A          G T  +  P    +        G P
Sbjct: 131 QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLP 190

Query: 222 EVRATRSEREPTRPP 236
               +   R PT  P
Sbjct: 191 RPAPSARPRPPTEGP 205


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 45/155 (29%), Positives = 61/155 (39%), Gaps = 41/155 (26%)

Query: 117  DHGSPKLEQRLQSCSQRG-AGDPYAPKVT-SPGIPGPLGTMTLSTISNPGTRTTCAHHQE 174
            + G P  + R  S  + G  G P AP +  SPG+PGP G        +PG R       E
Sbjct: 1297 ERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRG--------DPGERGPRGPKGE 1348

Query: 175  GGPAAKV--------------PGPTAWPEPL-PLGDPGQTAFSVLPLTPLQ-----KGGQ 214
             G   +V              PGP+  P P  PLGDPG      LP T ++     +G +
Sbjct: 1349 PGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGER 1408

Query: 215  PPP-----------PGCPEVRATRSEREPTRPPAQ 238
             PP           PG P +  +   + P  PP +
Sbjct: 1409 GPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGK 1443



 Score = 37.7 bits (86), Expect = 0.021
 Identities = 55/193 (28%), Positives = 66/193 (34%), Gaps = 46/193 (23%)

Query: 50   PPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESD 109
            PP P  PRG D            VG  GD   P      G          P  R      
Sbjct: 1623 PPGPVGPRGRDGE----------VGEKGDEGPPGDPGLPGKAGERGLRGAPGVRG----- 1667

Query: 110  VPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTC 169
             P     D G P  + R  S    G+  P   +   PG PGP G +     + PG R   
Sbjct: 1668 -PVGEKGDQGDPGEDGRNGS---PGSSGPKGDR-GEPGPPGPPGRLV---DTGPGAR--- 1716

Query: 170  AHHQEGGPAAK-VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKG-----GQPPPPGCPEV 223
               ++G P  +   GP       P GDPG      LP  P ++G     G P P G P V
Sbjct: 1717 ---EKGEPGDRGQEGPRG-----PKGDPG------LPGAPGERGIEGFRGPPGPQGDPGV 1762

Query: 224  RATRSEREPTRPP 236
            R    E+    PP
Sbjct: 1763 RGPAGEKGDRGPP 1775



 Score = 36.2 bits (82), Expect = 0.062
 Identities = 57/226 (25%), Positives = 72/226 (31%), Gaps = 44/226 (19%)

Query: 45   QGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRK 104
            QG R PP    P+G             P+G AG+  E      +GSR        P  + 
Sbjct: 1467 QGPRGPPGAIGPKGDR-------GFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKG 1519

Query: 105  LTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPG 164
                  P  R  + G P              G P  P V  P + GP G      +   G
Sbjct: 1520 PEGPPGPTGRQGEKGEP--------------GRPGDPAVVGPAVAGPKGEK--GDVGPAG 1563

Query: 165  TRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVR 224
             R       E GP    PG     +P P GDPG          P+   G+  PPG     
Sbjct: 1564 PRGATGVQGERGP----PGLVLPGDPGPKGDPGDRG-------PIGLTGRAGPPGDSGPP 1612

Query: 225  ATRSEREPTRPPAQV--EGEDVLVHQLLLHQVVEDGQHVVDGDAGV 268
              + +     PP  V   G D         +V E G     GD G+
Sbjct: 1613 GEKGDPGRPGPPGPVGPRGRD--------GEVGEKGDEGPPGDPGL 1650



 Score = 35.8 bits (81), Expect = 0.081
 Identities = 64/229 (27%), Positives = 77/229 (33%), Gaps = 42/229 (18%)

Query: 44   LQGLRTPPPPTEPR-GADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEK 102
            L G   PP P  P+   D     L     P GL G   EP  +   G +   D+ V   K
Sbjct: 2080 LPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPK--GDRGVPGIK 2137

Query: 103  RKLTESDVPFPRSPD--------------HGSPKLE-QRLQSCSQRGAGDPYAPKVTSPG 147
                E   P PR  D               G P L+  R       G GDP  P   +PG
Sbjct: 2138 GDRGE---PGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPG--APG 2192

Query: 148  IPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKV-----PGPTAW--PEPLPLGDPGQTA 200
            + GP G    S +      T        GP   V     PGP+    P+  P G PGQ  
Sbjct: 2193 LAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSP-GLPGQVG 2251

Query: 201  FSVLPLTPLQKG-----------GQPPPPGCPEVRATRSEREPTRPPAQ 238
             +  P  P + G           G P  PG P     + E  PT  P Q
Sbjct: 2252 ETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQ 2300



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 58/204 (28%), Positives = 70/204 (34%), Gaps = 46/204 (22%)

Query: 44   LQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKR 103
            LQG R PP P    G             P G  G +  P   Q          E  P  R
Sbjct: 2169 LQGPRGPPGPVGGHGDPG----------PPGAPG-LAGPAGPQGPSGLKGEPGETGPPGR 2217

Query: 104  KLTESD----VPFPRSPD-----HGSPKLEQRLQSCSQRGA----------GDPYAPKVT 144
             LT       +P P  P       GSP L  ++    + GA          GD  +P V 
Sbjct: 2218 GLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVP 2277

Query: 145  -SPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLP---LGDPGQTA 200
             SPG+PGP+G         PG          G P AK  G    P  L    +G+PG   
Sbjct: 2278 GSPGLPGPVGPK-----GEPGPTGAPGQAVVGLPGAK--GEKGAPGGLAGDLVGEPGAKG 2330

Query: 201  FSVLPLTPLQKG-----GQPPPPG 219
               LP    +KG     G+P  PG
Sbjct: 2331 DRGLPGPRGEKGEAGRAGEPGDPG 2354



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 114  RSPDHGSPKLEQRLQSCSQRG-AGDPYAPKVTSPGIPGPLGTM-TLSTISNPGTRTTCAH 171
            R+ + G P  + +  +   +G  GDP      SPG PGP G    L     PG       
Sbjct: 2346 RAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGF 2405

Query: 172  HQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSE 229
              + GP  ++  P    E    G PG+      PL P    G   PPG   ++  + +
Sbjct: 2406 PGQTGPRGEMGQPGPSGERGLAGPPGREGIPG-PLGPPGPPGSVGPPGASGLKGDKGD 2462



 Score = 31.6 bits (70), Expect = 1.5
 Identities = 36/108 (33%), Positives = 40/108 (37%), Gaps = 24/108 (22%)

Query: 136  GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
            GDP  P  T  G PGP G         PG+ T  A  + G      PG    P     G 
Sbjct: 1272 GDPGLPGRT--GAPGPQGP--------PGSAT--AKGERG-----FPGADGRP-----GS 1309

Query: 196  PGQTAFSVLPLTPLQKG--GQPPPPGCPEVRATRSEREPTRPPAQVEG 241
            PG+      P  P  KG  G P P G P  R  R  +     P QV G
Sbjct: 1310 PGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIG 1357



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 63/254 (24%), Positives = 84/254 (33%), Gaps = 42/254 (16%)

Query: 133  RGAGDPYAPKVTSPGIPGPLGTMTLSTI-------SNPGTRTTCAHHQEGGPAAKVPGPT 185
            RG   P  PK   PG+PG  G   +           +PG R       + GP   + G +
Sbjct: 1724 RGQEGPRGPK-GDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPG-LDGRS 1781

Query: 186  AWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGEDVL 245
                    G PG    S  P     K G P   G P +R  +    P+ PP         
Sbjct: 1782 GLD-----GKPGAAGPSG-PNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPG-------- 1827

Query: 246  VHQLLLHQVVEDGQHVVDGDAG----VGHAQDAIELGCDEALDEAAEREHGQSRMLLPVT 301
                L  +  EDG+  ++G  G     G      E G D        R+  +     P  
Sbjct: 1828 ----LPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKG-DSGASGREGRDGPKGERGAPGI 1882

Query: 302  LRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAG------ 355
            L  Q P  +P           G P  GG   + D    G + +  LP   GL G      
Sbjct: 1883 LGPQGPPGLPGPVGPPGQGFPGVP--GGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVP 1940

Query: 356  --DRFLSTSGMGPS 367
              DR L T+G+  S
Sbjct: 1941 NVDRLLETAGIKAS 1954



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 54/205 (26%), Positives = 71/205 (34%), Gaps = 54/205 (26%)

Query: 24   PQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEP- 82
            PQ   GL    PG +   G  QG    P  T P+G      S  +  LP G  G   EP 
Sbjct: 1885 PQGPPGL----PGPVGPPG--QGFPGVPGGTGPKGDRGETGSKGEQGLP-GERGLRGEPG 1937

Query: 83   ------RFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAG 136
                  R  +T+G + +A +E+     + + S +P P          E+R       G  
Sbjct: 1938 SVPNVDRLLETAGIKASALREIVETWDESSGSFLPVP----------ERRRGPKGDSGEQ 1987

Query: 137  DPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDP 196
             P       PG  GP+G         PG R       + GP          P  L LG+ 
Sbjct: 1988 GP-------PGKEGPIGF--------PGERGLKGDRGDPGPQG--------PPGLALGER 2024

Query: 197  GQTAFSVLPLTPLQKGGQPPPPGCP 221
            G       P  P    G+P  PG P
Sbjct: 2025 G-------PPGPSGLAGEPGKPGIP 2042


>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
          Length = 656

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 62/229 (27%), Positives = 88/229 (38%), Gaps = 44/229 (19%)

Query: 16  SLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHYSLVQVDLPVGL 75
           S  P  P P+    L+++GP       + +GL T  P  +P  +  S   L  +      
Sbjct: 350 SPSPPAPRPERPESLLVSGPSVT----LTEGLGTVRPEQDPAKSPGSPLLLRGLS----- 400

Query: 76  AGDIQEPRFSQTSGSRLAADKEVCPEKR----KLTESDVPFPRSPDHGSPKLEQRLQSCS 131
           +GD+  P      G    A +E  P  R     L   ++   RSP  G P+     ++CS
Sbjct: 401 SGDVAAP--EPIMGEPGQASEEFQPLARPWRATLAAEELVSHRSP--GEPQ-----ETCS 451

Query: 132 QRGAGDPYAPKVTSPGIP--GPLGTMTLST------ISNPGTRTTCAHHQE-GGPAAKVP 182
                +   P+ T PG+P  G  G M LS+      I  PG     A       P+ + P
Sbjct: 452 ---GTEVERPRQTGPGLPREGARGHMDLSSSEPSQDIEGPGLSILPARDATFSTPSVRQP 508

Query: 183 GPTAWPEPLP--LGDPG---QTAFSVLPLTPLQKGGQPPPPGCPEVRAT 226
            P+AW    P   G P        +VLP+ PL     PP P  P    T
Sbjct: 509 DPSAWLSSGPELTGMPRVRLAAPLAVLPMEPL-----PPEPVRPAALLT 552


>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
           sapiens]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 151 PLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQ 210
           P G+  L     P    T +  +E   AA   GP   P P    +P +T +S +P +  +
Sbjct: 451 PRGSPPLPAGPVPSQDITLSSEEEAEVAAPTKGPA--PAPQQCSEP-ETKWSSIPASKPR 507

Query: 211 KG------GQPPPPGCPEVRATRSEREPTRPPAQVE 240
           +G        PP PG   VR    +R  TRPPA++E
Sbjct: 508 RGTAPTRTAAPPWPGGVSVRTGPEKRSSTRPPAEME 543


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 63/241 (26%), Positives = 83/241 (34%), Gaps = 58/241 (24%)

Query: 21   GPHPQASSGLILNGPGTLNRTGVLQG-----LRTPPPPTEPRGADCSHYSLVQVDLPVGL 75
            GP P     +  NG GT+ R    +      L  PPPP EP   D +H  L  +  P G 
Sbjct: 1160 GPEPPPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAH--LPPLPPPEGE 1217

Query: 76   AGDIQEPRFSQTSGSRLAADKEVCPEK-RKLTESDVPFPRS---PDHGSPKLEQRLQSCS 131
            A    +P  S          K V  +   KL  S  P  +    P  GSP++++      
Sbjct: 1218 ARKPAKPPVS---------PKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKR------ 1262

Query: 132  QRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPL 191
              G   P +PK   P    P     +  ++             G P+    GP+  P P 
Sbjct: 1263 AHGTPPPVSPKPPPP----PTAPKPVKAVA-------------GLPSGSA-GPS--PAPS 1302

Query: 192  PLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTR-----------PPAQVE 240
            P   P   A +  P TP   G  P  P  P   A     +P R           PPA  E
Sbjct: 1303 PARQP-PAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPE 1361

Query: 241  G 241
            G
Sbjct: 1362 G 1362



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 55/203 (27%), Positives = 67/203 (33%), Gaps = 36/203 (17%)

Query: 51  PPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDV 110
           PPP EP  ADC    +             Q+   S    + +    EV P   K +    
Sbjct: 634 PPPPEPTPADCQSPKMT----------TFQDSELSDELQAAMTGPAEVGPTTEKPSSHLP 683

Query: 111 PFPRSPDHGSPKL--EQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMT------LSTISN 162
           P PR+       L    R  S SQ   GD         G PGP   M+      L     
Sbjct: 684 PTPRATTRQDSSLGGRARHMSSSQELLGD---------GPPGPSSPMSRSQEYLLDEGPA 734

Query: 163 PGTRTTCAHHQEGGPAAK----VPGPTAWPEPLPLG----DPGQTAFSVLPLTPLQKGG- 213
           PGT    A     G + K     P P    + LP G     P QT     P +P   GG 
Sbjct: 735 PGTPPREARPGRHGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALGGP 794

Query: 214 QPPPPGCPEVRATRSEREPTRPP 236
             P P   +V+ T     PT  P
Sbjct: 795 HGPAPATAKVKPTPQLLPPTERP 817


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 65/223 (29%), Positives = 81/223 (36%), Gaps = 39/223 (17%)

Query: 10  GTLAMLSLEPTGPHPQASSGL-----ILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHY 64
           GT ++ +  P  P  Q   G      +   PG   R G L G + P  P   +G + +H 
Sbjct: 334 GTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGEL-GPQGPTGPPGAKGQEGAHG 392

Query: 65  SLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCP-------EKRKLTESDVPFPRSP- 116
           +      P G  G +  P  S   GS  A      P       EK    E   P P  P 
Sbjct: 393 APGAAGNP-GAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPR 451

Query: 117 -DHGSPKLEQRLQSCSQRGAGDPYAPKVT-SPGIPGPLGTM----TLSTISNPGTRTTCA 170
            D G+P L          G G    P +  SPG+PGPLGT           +PG+R    
Sbjct: 452 GDPGAPGLP------GPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSR---- 501

Query: 171 HHQEGGPAAKVPGPTAWPEPL-PLGDPGQTAFSVLPLTPLQKG 212
               G P   V GP   P P  P GD G      LP  P  +G
Sbjct: 502 ----GDPGIGVAGP---PGPSGPPGDKGSPGSRGLPGFPGPQG 537


>gi|146134388 YLP motif containing 1 [Homo sapiens]
          Length = 2146

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 51/192 (26%), Positives = 66/192 (34%), Gaps = 21/192 (10%)

Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL 193
           G GD   P    P  PGP     LS       +    HHQ  GP   VP     P   P 
Sbjct: 96  GYGDWQPPPPPMPPPPGP----ALSYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPP 151

Query: 194 GDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGEDVLVHQLLLHQ 253
             PG    S +P  P Q     PPP  P      +  +P  PPAQ         Q  L  
Sbjct: 152 VPPG----SYMP--PSQ--SYMPPPQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAP 203

Query: 254 VVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPVTLRQQPPQRVPA- 312
                       + + H+Q    L   +A      + H +S++L P      PP   P  
Sbjct: 204 TPSYSSSSSSSQSYLSHSQS--YLPSSQASPSRPSQGHSKSQLLAP-----PPPSAPPGN 256

Query: 313 -SDVQQFAVDGG 323
            + VQQ  ++ G
Sbjct: 257 KTTVQQEPLESG 268


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 136  GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
            G P AP    PG P   G  + ++   P         +E  P    P PT  P+P P   
Sbjct: 1421 GPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLL----EEKPPPTPPPAPTPQPQPPPPPP 1476

Query: 196  PGQTAF-SVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPA 237
            P Q A  S  PL        PPPP  P          P  PPA
Sbjct: 1477 PPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPA 1519



 Score = 36.2 bits (82), Expect = 0.062
 Identities = 48/191 (25%), Positives = 62/191 (32%), Gaps = 7/191 (3%)

Query: 138  PYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPG 197
            P  P   S G P P     L     P T       Q   P    P   A P P PL  P 
Sbjct: 1437 PGLPSANSNGTPEP----PLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPT 1492

Query: 198  QTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGEDVLVHQLLLHQVVED 257
             ++    PL P      P PP  P   A      P  P A    +  L     LH   + 
Sbjct: 1493 PSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQ 1552

Query: 258  GQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPVTLRQQPPQ--RVPASDV 315
                V G+      +   E G     DE   R      + L +   ++PP   RV  + +
Sbjct: 1553 ETAAVCGETDEEAGESGGE-GIFRERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALL 1611

Query: 316  QQFAVDGGDPQ 326
            Q+F  +  D Q
Sbjct: 1612 QKFTPEIKDGQ 1622


>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
           P  P HG P ++ +       G G P  P +  PG PG +G         PG +      
Sbjct: 135 PGLPGHGIPGIKGKPGPQGYPGVGKPGMPGM--PGKPGAMGM--------PGAKGEIGQK 184

Query: 173 QEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPP--PGCPEVRATRSER 230
            E GP   +PGP   P P  L   G+     LP  P  KG + P   PG   +R  + ++
Sbjct: 185 GEIGPMG-IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDK 243



 Score = 37.4 bits (85), Expect = 0.028
 Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 17/108 (15%)

Query: 133 RGAGDPYAPKVTSP-GIPGPLGTMTLSTISNPG-TRTTCAHHQEGGPAAK---------- 180
           +G G P AP V  P G+ GP G + L  +  PG T         G P A           
Sbjct: 243 KGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIG 302

Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKG-----GQPPPPGCPEV 223
           VPG    P    +G PGQ      P  P  KG     G P PPG P +
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGI 350



 Score = 35.8 bits (81), Expect = 0.081
 Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 33/108 (30%)

Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL 193
           G G P  P +  PGIPGP G         PG                +PGP  +P    +
Sbjct: 501 GIGGPSGP-IGPPGIPGPKG--------EPG----------------LPGPPGFPG---I 532

Query: 194 GDPGQTAFSVLP-----LTPLQKGGQPPPPGCPEVRATRSEREPTRPP 236
           G PG       P     L P  + G P PPG P      +   PT PP
Sbjct: 533 GKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPP 580



 Score = 34.3 bits (77), Expect = 0.23
 Identities = 36/115 (31%), Positives = 42/115 (36%), Gaps = 19/115 (16%)

Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
           P  P     K EQ L        G P  P +  PG PGP G   +  +  PG        
Sbjct: 324 PGQPGFPGGKGEQGLPGLP----GPPGLPGIGKPGFPGPKGDRGMGGV--PG---ALGPR 374

Query: 173 QEGGP--AAKVPGPTAWPE----PLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
            E GP  A  + GP   P     P P+G PG   F      P  +GG   P G P
Sbjct: 375 GEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFP----GPKGEGGIVGPQGPP 425


>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
           P  P HG P ++ +       G G P  P +  PG PG +G         PG +      
Sbjct: 135 PGLPGHGIPGIKGKPGPQGYPGVGKPGMPGM--PGKPGAMGM--------PGAKGEIGQK 184

Query: 173 QEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPP--PGCPEVRATRSER 230
            E GP   +PGP   P P  L   G+     LP  P  KG + P   PG   +R  + ++
Sbjct: 185 GEIGPMG-IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDK 243



 Score = 37.4 bits (85), Expect = 0.028
 Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 17/108 (15%)

Query: 133 RGAGDPYAPKVTSP-GIPGPLGTMTLSTISNPG-TRTTCAHHQEGGPAAK---------- 180
           +G G P AP V  P G+ GP G + L  +  PG T         G P A           
Sbjct: 243 KGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIG 302

Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKG-----GQPPPPGCPEV 223
           VPG    P    +G PGQ      P  P  KG     G P PPG P +
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGI 350



 Score = 35.8 bits (81), Expect = 0.081
 Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 33/108 (30%)

Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL 193
           G G P  P +  PGIPGP G         PG                +PGP  +P    +
Sbjct: 501 GIGGPSGP-IGPPGIPGPKG--------EPG----------------LPGPPGFPG---I 532

Query: 194 GDPGQTAFSVLP-----LTPLQKGGQPPPPGCPEVRATRSEREPTRPP 236
           G PG       P     L P  + G P PPG P      +   PT PP
Sbjct: 533 GKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPP 580



 Score = 34.3 bits (77), Expect = 0.23
 Identities = 36/115 (31%), Positives = 42/115 (36%), Gaps = 19/115 (16%)

Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
           P  P     K EQ L        G P  P +  PG PGP G   +  +  PG        
Sbjct: 324 PGQPGFPGGKGEQGLPGLP----GPPGLPGIGKPGFPGPKGDRGMGGV--PG---ALGPR 374

Query: 173 QEGGP--AAKVPGPTAWPE----PLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
            E GP  A  + GP   P     P P+G PG   F      P  +GG   P G P
Sbjct: 375 GEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFP----GPKGEGGIVGPQGPP 425


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 63/255 (24%), Positives = 92/255 (36%), Gaps = 24/255 (9%)

Query: 4   LLLVSLGTLAMLSLEPTGPH--PQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADC 61
           L+L+S+  LA+ S +        + S  LI   P   +  G  +    PPPP +P+G   
Sbjct: 3   LILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPP 62

Query: 62  SHYSLVQVDLPVGLA-GDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
              +  Q   P G   G   +   S++  S     +   P+     +   P P  P    
Sbjct: 63  QGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 122

Query: 121 PKLEQRLQSCSQRGA-------GD----PYAPKVTSPGIPGPLGTMTLSTISNPGTRTTC 169
           P+   R Q     G        GD    P +P     G P   G         PG     
Sbjct: 123 PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ-- 180

Query: 170 AHHQEGGPAAKVPGPTAWPE-PLPLGDPGQTAFSV--LPLTPLQKGGQ-----PPPPGCP 221
               +GG   + P P   P+ P P GD  +++ S    P  P  +GG      PPPPG P
Sbjct: 181 GPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKP 240

Query: 222 EVRATRSEREPTRPP 236
           +    +   +P  PP
Sbjct: 241 QGPPPQGGNKPQGPP 255



 Score = 35.0 bits (79), Expect = 0.14
 Identities = 56/231 (24%), Positives = 79/231 (34%), Gaps = 20/231 (8%)

Query: 18  EPTGPHPQASSGLILNGPGTLNRTGVLQGLRTP----PPPTEPRGADCSHYSLVQVDLPV 73
           +P GP PQ         P    +    QG   P    PPP +P+G      +  Q   P 
Sbjct: 76  KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPP 135

Query: 74  GLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQR 133
           G      +P+     G +  + +   P K    +   P   +   G P    + Q    +
Sbjct: 136 G------KPQGPPPQGDKSRSPRSP-PGK---PQGPPPQGGNQPQGPPPPPGKPQGPPPQ 185

Query: 134 GAGDPYAPKVTS-PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLP 192
           G   P  P     P  P P G  + S+ S PG         +GG   + P P   P   P
Sbjct: 186 GGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQ--GPPPQGGNQPQGPPP---PPGKP 240

Query: 193 LGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGED 243
            G P Q         P  K   PP  G  + ++ RS     + P Q EG +
Sbjct: 241 QGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNN 291


>gi|197245373 proline rich 22 isoform 1 [Homo sapiens]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 36/104 (34%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 147 GIPGPLGTMTLST---ISNPGTRTTCAHHQE--GGPAAKVPG-PTAWPEPLPLG---DPG 197
           G+P   G+  L     +  PG      H+Q+  GGP   +P  P   P P  LG   D G
Sbjct: 106 GVPSAPGSYLLEPQPYLKAPGL-PPYPHYQQAPGGPQFLLPYFPPEGPGPEALGFVGDAG 164

Query: 198 QTAFSVLPLTPLQKGGQPPPPGCPEVR-----ATRSEREPTRPP 236
             AF  LPL PL++G  P PP  P+             EPT PP
Sbjct: 165 PAAFVELPLPPLEEGPAPLPPPPPKENKPPPVLITLPAEPTLPP 208


>gi|23503299 proline rich 22 isoform 2 [Homo sapiens]
          Length = 420

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 36/104 (34%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 147 GIPGPLGTMTLST---ISNPGTRTTCAHHQE--GGPAAKVPG-PTAWPEPLPLG---DPG 197
           G+P   G+  L     +  PG      H+Q+  GGP   +P  P   P P  LG   D G
Sbjct: 104 GVPSAPGSYLLEPQPYLKAPGL-PPYPHYQQAPGGPQFLLPYFPPEGPGPEALGFVGDAG 162

Query: 198 QTAFSVLPLTPLQKGGQPPPPGCPEVR-----ATRSEREPTRPP 236
             AF  LPL PL++G  P PP  P+             EPT PP
Sbjct: 163 PAAFVELPLPPLEEGPAPLPPPPPKENKPPPVLITLPAEPTLPP 206


>gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo
           sapiens]
          Length = 1662

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 49/181 (27%), Positives = 68/181 (37%), Gaps = 35/181 (19%)

Query: 190 PLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGE---DVLV 246
           P  LG P         L P+  G  P PPG        + R+  +   QV+GE    + V
Sbjct: 715 PYSLGRPDPNP----SLQPIATGQSPGPPG--------ARRKLPQSEGQVQGERTYSLAV 762

Query: 247 HQLLLHQVVEDGQ----HVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPVTL 302
           H  L  Q+ E         V  D G GH +  +E+    A    +E +  + R  LP  +
Sbjct: 763 HPALSPQLSEQKNLSLLSPVPEDKGPGHTRAGLEMSLRAATSSLSEEQVSELRDNLPKEV 822

Query: 303 RQQPPQRV-PASDVQQFAVDGGDPQV---------GGA------RVEDDCEALGGRPDAN 346
           R  P   + P S V    +     QV         GGA      R E   EA  GRP+ +
Sbjct: 823 RLSPKLILDPKSSVTPAIISAALQQVVHNKSLVTAGGALGNPPSRGERRLEASMGRPEVS 882

Query: 347 L 347
           +
Sbjct: 883 M 883


>gi|239756197 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 51/212 (24%), Positives = 75/212 (35%), Gaps = 14/212 (6%)

Query: 44  LQGLRTPPPPTEPR-GADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVC--- 99
           L GLRTP   +  R G   S      ++   G  G  + P  ++     +  D+++    
Sbjct: 28  LHGLRTPGRGSRARLGQARSCLGAAGLET-AGAEGSFRGPGGAEKRRKEVGTDEKILKCV 86

Query: 100 ---PEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMT 156
              P K ++ ES       P  G   +   +   S      P  P+  SPG   P G  +
Sbjct: 87  PGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPP--PRAQSPGFQQP-GRRS 143

Query: 157 LSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLG---DPGQTAFSVLPLTPLQKGG 213
              +S       C+   + G     PGP  +  P+  G    PG T         L +G 
Sbjct: 144 ARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAALGEGR 203

Query: 214 QPPPPGCPEVRATRSEREPTRPPAQVEGEDVL 245
           QPP        A   ER P    A+  G D+L
Sbjct: 204 QPPLVSAESWEAVGFERRPGELCAEPGGPDLL 235


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,840,202
Number of Sequences: 37866
Number of extensions: 1481554
Number of successful extensions: 6136
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 470
Number of HSP's that attempted gapping in prelim test: 5115
Number of HSP's gapped (non-prelim): 1313
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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