Guide to the Human Genome
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Name: PRR22 Sequence: fasta or formatted (422aa) NCBI GI: 197245373
Description:

proline rich 22 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {420aa} proline rich 22 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         48           2
 C cysteine            1.7          7           1
 D aspartate           3.8         16           2
 E glutamate           7.1         30           2
 F phenylalanine       4.0         17           2
 G glycine            10.0         42           2
 H histidine           1.9          8           1
 I isoleucine          1.4          6           1
 K lysine              5.0         21           2
 L leucine            10.9         46           2
 M methionine          0.9          4           1
 N asparagine          1.7          7           1
 P proline            19.9         84           5
 Q glutamine           3.3         14           2
 R arginine            2.1          9           1
 S serine              5.2         22           2
 T threonine           3.1         13           2
 V valine              3.6         15           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline rich 22 isoform 1 
PRR22                 0.847   proline rich 22 isoform 2 
COL3A1                0.040   collagen type III alpha 1 preproprotein 
WASF2                 0.039   WAS protein family, member 2 
RAPH1                 0.039   Ras association and pleckstrin homology domains 1 is...
PRB3                  0.039   proline-rich protein BstNI subfamily 3 precursor [H...
TAF4                  0.038   TBP-associated factor 4 
APBB1IP               0.037   amyloid beta (A4) precursor protein-binding, family ...
DIAPH1                0.036   diaphanous 1 isoform 2 
DIAPH1                0.036   diaphanous 1 isoform 1 
WBP11                 0.035   WW domain binding protein 11 
RERE                  0.035   atrophin-1 like protein isoform b 
RERE                  0.035   atrophin-1 like protein isoform a 
RERE                  0.035   atrophin-1 like protein isoform a 
PRB1                  0.033   proline-rich protein BstNI subfamily 1 isoform 1 pre...
COL10A1               0.033   type X collagen alpha 1 precursor 
PRB2                  0.033   proline-rich protein BstNI subfamily 2 
MAPK1IP1L             0.033   MAPK-interacting and spindle-stabilizing protein [Ho...
KDM6B                 0.033   lysine (K)-specific demethylase 6B 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
FMN2                  0.032   formin 2 
WNK2                  0.032   WNK lysine deficient protein kinase 2 
PRR12                 0.032   proline rich 12 
COL4A2                0.031   alpha 2 type IV collagen preproprotein 
SETD1B                0.031   SET domain containing 1B 
PTPN23                0.030   protein tyrosine phosphatase, non-receptor type 23 [...
TFAP2E                0.030   transcription factor AP-2 epsilon (activating enhan...
ZNF207                0.030   zinc finger protein 207 isoform a 
COL4A4                0.029   alpha 4 type IV collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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