Guide to the Human Genome
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Name: LOC100292156 Sequence: fasta or formatted (331aa) NCBI GI: 239756197
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         28           2
 C cysteine            2.7          9           1
 D aspartate           0.6          2           1
 E glutamate           8.8         29           2
 F phenylalanine       3.6         12           2
 G glycine            15.7         52           3
 H histidine           0.9          3           1
 I isoleucine          1.8          6           2
 K lysine              1.8          6           1
 L leucine             7.3         24           2
 M methionine          0.9          3           1
 N asparagine          0.9          3           1
 P proline            10.9         36           3
 Q glutamine           3.9         13           2
 R arginine           13.9         46           2
 S serine              6.3         21           1
 T threonine           4.8         16           1
 V valine              4.5         15           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
ZNF541                0.026   zinc finger protein 541 
IRX5                  0.023   iroquois homeobox protein 5 
COL4A4                0.023   alpha 4 type IV collagen precursor 
LOC100291562          0.021   PREDICTED: similar to hCG2045708 
LOC100287770          0.021   PREDICTED: similar to hCG2045708 
LOC100287770          0.021   PREDICTED: hypothetical protein XP_002343109 
COL8A2                0.021   collagen, type VIII, alpha 2 
LOC643355             0.020   PREDICTED: hypothetical protein 
LOC643355             0.020   PREDICTED: hypothetical protein 
LOC388199             0.020   PREDICTED: hypothetical protein LOC388199 
LOC388199             0.020   hypothetical protein LOC388199 
COL18A1               0.018   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.018   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.018   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
MN1                   0.018   meningioma  1 
ZNF385A               0.017   zinc finger protein 385A isoform b 
COL4A1                0.017   alpha 1 type IV collagen preproprotein 
LOC728940             0.017   PREDICTED: hypothetical protein 
LOC729989             0.017   PREDICTED: hypothetical protein 
LOC728650             0.017   PREDICTED: hypothetical protein 
LOC728940             0.017   PREDICTED: hypothetical protein 
LOC729989             0.017   PREDICTED: hypothetical protein 
LOC728940             0.017   PREDICTED: hypothetical protein 
LOC729989             0.017   PREDICTED: hypothetical protein 
CROCC                 0.017   ciliary rootlet coiled-coil 
LOC100129571          0.015   PREDICTED: similar to hCG1646049 
LOC100129571          0.015   PREDICTED: similar to hCG1646049 
LOC100129571          0.015   PREDICTED: similar to hCG1646049 
KANK2                 0.015   ankyrin repeat domain 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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